RNA–Protein interactions for RNA: ENST00000494518.1

SKA1-205, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 2

Gene SKA1, Length 746 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-205ENST00000494518 NISCHQ9Y2I1 1504 aa31.78■■■□□ 2.68
SKA1-205ENST00000494518 ABCC9O60706 1549 aa28.64■■■□□ 2.18
SKA1-205ENST00000494518 CCDC180Q9P1Z9 1646 aa28.55■■■□□ 2.16
SKA1-205ENST00000494518 RB1CC1Q8TDY2 1594 aa27.18■■□□□ 1.94
SKA1-205ENST00000494518 AEBP2Q6ZN18 517 aaPredicted RBP27.14■■□□□ 1.94
SKA1-205ENST00000494518 NACADO15069 1562 aa26.96■■□□□ 1.91
SKA1-205ENST00000494518 DCAF8L2P0C7V8 631 aa26.92■■□□□ 1.9
SKA1-205ENST00000494518 DNAJC5BQ9UF47 199 aa26.86■■□□□ 1.89
SKA1-205ENST00000494518 UNC13AQ9UPW8 1703 aa26.71■■□□□ 1.87
SKA1-205ENST00000494518 PABPN1Q86U42 306 aaKnown RBP eCLIP26.66■■□□□ 1.86
SKA1-205ENST00000494518 MYO15BQ96JP2 1530 aa26.49■■□□□ 1.83
SKA1-205ENST00000494518 BICRAQ9NZM4 1560 aa26.43■■□□□ 1.82
SKA1-205ENST00000494518 ZCCHC6Q5VYS8 1495 aaKnown RBP26.33■■□□□ 1.81
SKA1-205ENST00000494518 DCAF1Q9Y4B6 1507 aa26.17■■□□□ 1.78
SKA1-205ENST00000494518 SCRIBQ14160 1630 aa26.11■■□□□ 1.77
SKA1-205ENST00000494518 CHIC1Q5VXU3 224 aa25.99■■□□□ 1.75
SKA1-205ENST00000494518 SHROOM4Q9ULL8 1493 aa25.93■■□□□ 1.74
SKA1-205ENST00000494518 CC2D2AQ9P2K1 1620 aa25.86■■□□□ 1.73
SKA1-205ENST00000494518 EIF4G1Q04637 1599 aaKnown RBP25.78■■□□□ 1.72
SKA1-205ENST00000494518 CECR2Q9BXF3 1484 aa25.76■■□□□ 1.71
SKA1-205ENST00000494518 NCAPD3P42695 1498 aa24.85■■□□□ 1.57
SKA1-205ENST00000494518 SMARCA4P51532 1647 aa24.85■■□□□ 1.57
SKA1-205ENST00000494518 ATAD2BQ9ULI0 1458 aa24.83■■□□□ 1.56
SKA1-205ENST00000494518 SMARCA2P51531 1590 aa24.75■■□□□ 1.55
SKA1-205ENST00000494518 ERCC6Q03468 1493 aa24.71■■□□□ 1.55
SKA1-205ENST00000494518 HMGXB3Q12766 1538 aa24.71■■□□□ 1.55
SKA1-205ENST00000494518 BAZ1AQ9NRL2 1556 aaPredicted RBP24.67■■□□□ 1.54
SKA1-205ENST00000494518 NESP48681 1621 aa24.61■■□□□ 1.53
SKA1-205ENST00000494518 DNAJC5Q9H3Z4 198 aa24.61■■□□□ 1.53
SKA1-205ENST00000494518 CUX2O14529 1486 aa24.61■■□□□ 1.53
SKA1-205ENST00000494518 BAZ1BQ9UIG0 1483 aaKnown RBP24.61■■□□□ 1.53
SKA1-205ENST00000494518 MROH2BQ7Z745 1585 aa24.54■■□□□ 1.52
SKA1-205ENST00000494518 PEG3Q9GZU2 1588 aa24.52■■□□□ 1.52
SKA1-205ENST00000494518 THOC2Q8NI27 1593 aaKnown RBP24.35■■□□□ 1.49
SKA1-205ENST00000494518 LAMC3Q9Y6N6 1575 aa24.35■■□□□ 1.49
SKA1-205ENST00000494518 KIF21AQ7Z4S6 1674 aa24.34■■□□□ 1.49
SKA1-205ENST00000494518 WIZO95785 1651 aa24.29■■□□□ 1.48
SKA1-205ENST00000494518 PDS5BQ9NTI5 1447 aa24.18■■□□□ 1.46
SKA1-205ENST00000494518 CADPSQ9ULU8 1353 aa24.12■■□□□ 1.45
SKA1-205ENST00000494518 MRC2Q9UBG0 1479 aa24.02■■□□□ 1.44
SKA1-205ENST00000494518 WDR62O43379 1518 aa23.96■■□□□ 1.43
SKA1-205ENST00000494518 RSF1Q96T23 1441 aaPredicted RBP23.96■■□□□ 1.43
SKA1-205ENST00000494518 CEP164Q9UPV0 1460 aa23.93■■□□□ 1.42
SKA1-205ENST00000494518 TOP2AP11388 1531 aaKnown RBP23.91■■□□□ 1.42
SKA1-205ENST00000494518 FANCD2Q9BXW9 1451 aa23.89■■□□□ 1.42
SKA1-205ENST00000494518 CFTRP13569 1480 aa23.84■■□□□ 1.41
SKA1-205ENST00000494518 PRDM2Q13029 1718 aa23.73■■□□□ 1.39
SKA1-205ENST00000494518 URB2Q14146 1524 aaKnown RBP23.72■■□□□ 1.39
SKA1-205ENST00000494518 TRIM41Q8WV44 630 aa23.66■■□□□ 1.38
SKA1-205ENST00000494518 CCDC88BA6NC98 1476 aa23.63■■□□□ 1.37
SKA1-205ENST00000494518 OSCARQ8IYS5 282 aa23.46■■□□□ 1.35
SKA1-205ENST00000494518 TOPBP1Q92547 1522 aa23.45■■□□□ 1.34
SKA1-205ENST00000494518 ZNF608Q9ULD9 1512 aaPredicted RBP23.45■■□□□ 1.34
SKA1-205ENST00000494518 IFT140Q96RY7 1462 aa23.42■■□□□ 1.34
SKA1-205ENST00000494518 DNMBPQ6XZF7 1577 aa23.36■■□□□ 1.33
SKA1-205ENST00000494518 EIF4G3O43432 1585 aaKnown RBP23.34■■□□□ 1.33
SKA1-205ENST00000494518 ABCC8Q09428 1581 aa23.31■■□□□ 1.32
SKA1-205ENST00000494518 SENP3Q9H4L4 574 aaPredicted RBP23.28■■□□□ 1.32
SKA1-205ENST00000494518 RIMBP3CA6NJZ7 1639 aa23.28■■□□□ 1.32
SKA1-205ENST00000494518 RIMBP3BA6NNM3 1639 aa23.28■■□□□ 1.32
SKA1-205ENST00000494518 RIMBP3Q9UFD9 1639 aa23.28■■□□□ 1.32
SKA1-205ENST00000494518 TARBP1Q13395 1621 aaKnown RBP23.26■■□□□ 1.31
SKA1-205ENST00000494518 CHD1O14646 1710 aa23.23■■□□□ 1.31
SKA1-205ENST00000494518 AQRO60306 1485 aaKnown RBP eCLIP23.23■■□□□ 1.311e-7■■■□□ 15.7
SKA1-205ENST00000494518 POLA1P09884 1462 aaPredicted RBP23.21■■□□□ 1.31
SKA1-205ENST00000494518 ARHGEF11O15085 1522 aa23.17■■□□□ 1.3
SKA1-205ENST00000494518 RAD54L2Q9Y4B4 1467 aa23.16■■□□□ 1.3
SKA1-205ENST00000494518 FBLN2P98095 1184 aa23.1■■□□□ 1.29
SKA1-205ENST00000494518 SOGA1O94964 1423 aa23.08■■□□□ 1.28
SKA1-205ENST00000494518 FGD5Q6ZNL6 1462 aa23.07■■□□□ 1.28
SKA1-205ENST00000494518 TDRD9Q8NDG6 1382 aaKnown RBP23.07■■□□□ 1.28
SKA1-205ENST00000494518 CUX1P39880 1505 aa23.05■■□□□ 1.28
SKA1-205ENST00000494518 SNAPC4Q5SXM2 1469 aa22.99■■□□□ 1.27
SKA1-205ENST00000494518 CYB5RLQ6IPT4 315 aa22.99■■□□□ 1.27
SKA1-205ENST00000494518 SUPT5HO00267 1087 aaKnown RBP22.96■■□□□ 1.27
SKA1-205ENST00000494518 WDR97A6NE52 1622 aa22.94■■□□□ 1.26
SKA1-205ENST00000494518 ARAP1Q96P48 1450 aa22.94■■□□□ 1.26
SKA1-205ENST00000494518 PBRM1Q86U86 1689 aa22.9■■□□□ 1.26
SKA1-205ENST00000494518 PHF23Q9BUL5 403 aaPredicted RBP22.88■■□□□ 1.25
SKA1-205ENST00000494518 GRIN2BQ13224 1484 aa22.87■■□□□ 1.25
SKA1-205ENST00000494518 MAGI1Q96QZ7 1491 aaPredicted RBP22.86■■□□□ 1.25
SKA1-205ENST00000494518 CHMP7Q8WUX9 453 aaPredicted RBP22.86■■□□□ 1.25
SKA1-205ENST00000494518 CLASP1Q7Z460 1538 aa22.86■■□□□ 1.25
SKA1-205ENST00000494518 SYNJ1O43426 1573 aa22.84■■□□□ 1.25
SKA1-205ENST00000494518 SYNJ2O15056 1496 aa22.8■■□□□ 1.24
SKA1-205ENST00000494518 GAPVD1Q14C86 1478 aa22.8■■□□□ 1.24
SKA1-205ENST00000494518 ABCA5Q8WWZ7 1642 aa22.79■■□□□ 1.24
SKA1-205ENST00000494518 TRHP20396 242 aaPredicted RBP22.76■■□□□ 1.23
SKA1-205ENST00000494518 ABCA10Q8WWZ4 1543 aa22.76■■□□□ 1.23
SKA1-205ENST00000494518 BIVM-ERCC5R4GMW8 1640 aa22.68■■□□□ 1.22
SKA1-205ENST00000494518 TOP2BQ02880 1626 aa22.65■■□□□ 1.22
SKA1-205ENST00000494518 WRNQ14191 1432 aaPredicted RBP eCLIP22.65■■□□□ 1.22
SKA1-205ENST00000494518 ADAMTS12P58397 1594 aa22.63■■□□□ 1.21
SKA1-205ENST00000494518 GRIN2AQ12879 1464 aa22.6■■□□□ 1.21
SKA1-205ENST00000494518 ERCC6L2Q5T890 1561 aa22.58■■□□□ 1.2
SKA1-205ENST00000494518 CEP170Q5SW79 1584 aa22.57■■□□□ 1.2
SKA1-205ENST00000494518 NUP160Q12769 1436 aa22.49■■□□□ 1.19
SKA1-205ENST00000494518 FHAD1B1AJZ9 1412 aa22.48■■□□□ 1.19
SKA1-205ENST00000494518 ERICH3Q5RHP9 1530 aa22.47■■□□□ 1.19
SKA1-205ENST00000494518 SHROOM2Q13796 1616 aa22.44■■□□□ 1.18
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms