RNA–Protein interactions for RNA: ENST00000494446.1

FN1-225, Transcript of fibronectin 1, humanhuman

TSL 2

Gene FN1, Length 676 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
FN1-225ENST00000494446 NISCHQ9Y2I1 1504 aa17.72■□□□□ 0.43
FN1-225ENST00000494446 ABCC9O60706 1549 aa16.71■□□□□ 0.27
FN1-225ENST00000494446 AEBP2Q6ZN18 517 aaPredicted RBP16.55■□□□□ 0.24
FN1-225ENST00000494446 CCDC180Q9P1Z9 1646 aa16.19■□□□□ 0.18
FN1-225ENST00000494446 DNAJC5BQ9UF47 199 aa16.14■□□□□ 0.17
FN1-225ENST00000494446 RB1CC1Q8TDY2 1594 aa15.66■□□□□ 0.1
FN1-225ENST00000494446 CHIC1Q5VXU3 224 aa15.53■□□□□ 0.08
FN1-225ENST00000494446 PABPN1Q86U42 306 aaKnown RBP eCLIP15.47■□□□□ 0.07
FN1-225ENST00000494446 UNC13AQ9UPW8 1703 aa15.42■□□□□ 0.06
FN1-225ENST00000494446 NACADO15069 1562 aa15.39■□□□□ 0.05
FN1-225ENST00000494446 DCAF8L2P0C7V8 631 aa15.28■□□□□ 0.04
FN1-225ENST00000494446 BICRAQ9NZM4 1560 aa15.22■□□□□ 0.03
FN1-225ENST00000494446 DNAJC5Q9H3Z4 198 aa15.21■□□□□ 0.03
FN1-225ENST00000494446 CECR2Q9BXF3 1484 aa15.09■□□□□ 0.01
FN1-225ENST00000494446 CC2D2AQ9P2K1 1620 aa15.08■□□□□ 0
FN1-225ENST00000494446 MYO15BQ96JP2 1530 aa14.93□□□□□ -0.02
FN1-225ENST00000494446 EIF4G1Q04637 1599 aaKnown RBP14.89□□□□□ -0.03
FN1-225ENST00000494446 SHROOM4Q9ULL8 1493 aa14.88□□□□□ -0.03
FN1-225ENST00000494446 SCRIBQ14160 1630 aa14.74□□□□□ -0.05
FN1-225ENST00000494446 CUX2O14529 1486 aa14.58□□□□□ -0.08
FN1-225ENST00000494446 DCAF1Q9Y4B6 1507 aa14.56□□□□□ -0.08
FN1-225ENST00000494446 ZCCHC6Q5VYS8 1495 aaKnown RBP14.55□□□□□ -0.08
FN1-225ENST00000494446 ERCC6Q03468 1493 aa14.47□□□□□ -0.09
FN1-225ENST00000494446 TRIM41Q8WV44 630 aa14.39□□□□□ -0.11
FN1-225ENST00000494446 SENP3Q9H4L4 574 aaPredicted RBP14.24□□□□□ -0.13
FN1-225ENST00000494446 NESP48681 1621 aa14.21□□□□□ -0.13
FN1-225ENST00000494446 NCAPD3P42695 1498 aa14.18□□□□□ -0.14
FN1-225ENST00000494446 THOC2Q8NI27 1593 aaKnown RBP14.17□□□□□ -0.14
FN1-225ENST00000494446 ATAD2BQ9ULI0 1458 aa14.08□□□□□ -0.16
FN1-225ENST00000494446 SMARCA2P51531 1590 aa14.08□□□□□ -0.16
FN1-225ENST00000494446 KIF21AQ7Z4S6 1674 aa14.07□□□□□ -0.16
FN1-225ENST00000494446 HMGXB3Q12766 1538 aa14.05□□□□□ -0.16
FN1-225ENST00000494446 PHF23Q9BUL5 403 aaPredicted RBP14.01□□□□□ -0.17
FN1-225ENST00000494446 LAMC3Q9Y6N6 1575 aa14□□□□□ -0.17
FN1-225ENST00000494446 SMARCA4P51532 1647 aa13.97□□□□□ -0.17
FN1-225ENST00000494446 BAZ1AQ9NRL2 1556 aaPredicted RBP13.94□□□□□ -0.18
FN1-225ENST00000494446 BAZ1BQ9UIG0 1483 aaKnown RBP13.93□□□□□ -0.18
FN1-225ENST00000494446 PDS5BQ9NTI5 1447 aa13.91□□□□□ -0.18
FN1-225ENST00000494446 OSCARQ8IYS5 282 aa13.85□□□□□ -0.19
FN1-225ENST00000494446 MRC2Q9UBG0 1479 aa13.84□□□□□ -0.19
FN1-225ENST00000494446 WDR62O43379 1518 aa13.81□□□□□ -0.2
FN1-225ENST00000494446 PEG3Q9GZU2 1588 aa13.79□□□□□ -0.2
FN1-225ENST00000494446 RIMBP3CA6NJZ7 1639 aa13.79□□□□□ -0.2
FN1-225ENST00000494446 RIMBP3BA6NNM3 1639 aa13.79□□□□□ -0.2
FN1-225ENST00000494446 RIMBP3Q9UFD9 1639 aa13.79□□□□□ -0.2
FN1-225ENST00000494446 CADPSQ9ULU8 1353 aa13.73□□□□□ -0.21
FN1-225ENST00000494446 CEP164Q9UPV0 1460 aa13.68□□□□□ -0.22
FN1-225ENST00000494446 MROH2BQ7Z745 1585 aa13.66□□□□□ -0.22
FN1-225ENST00000494446 TRHP20396 242 aaPredicted RBP13.65□□□□□ -0.22
FN1-225ENST00000494446 ARHGEF11O15085 1522 aa13.64□□□□□ -0.23
FN1-225ENST00000494446 FANCD2Q9BXW9 1451 aa13.61□□□□□ -0.23
FN1-225ENST00000494446 CYB5RLQ6IPT4 315 aa13.59□□□□□ -0.23
FN1-225ENST00000494446 URB2Q14146 1524 aaKnown RBP13.54□□□□□ -0.24
FN1-225ENST00000494446 WIZO95785 1651 aa13.53□□□□□ -0.24
FN1-225ENST00000494446 ZNF608Q9ULD9 1512 aaPredicted RBP13.47□□□□□ -0.25
FN1-225ENST00000494446 CHD1O14646 1710 aa13.47□□□□□ -0.25
FN1-225ENST00000494446 CFTRP13569 1480 aa13.46□□□□□ -0.25
FN1-225ENST00000494446 ARAP1Q96P48 1450 aa13.45□□□□□ -0.26
FN1-225ENST00000494446 PRDM2Q13029 1718 aa13.43□□□□□ -0.26
FN1-225ENST00000494446 IFT140Q96RY7 1462 aa13.41□□□□□ -0.26
FN1-225ENST00000494446 EIF4G3O43432 1585 aaKnown RBP13.39□□□□□ -0.27
FN1-225ENST00000494446 FBLN2P98095 1184 aa13.35□□□□□ -0.27
FN1-225ENST00000494446 RSF1Q96T23 1441 aaPredicted RBP13.33□□□□□ -0.28
FN1-225ENST00000494446 FOXD1Q16676 465 aa13.32□□□□□ -0.28
FN1-225ENST00000494446 TOPBP1Q92547 1522 aa13.29□□□□□ -0.28
FN1-225ENST00000494446 AQRO60306 1485 aaKnown RBP eCLIP13.28□□□□□ -0.283e-28■■■■■ 33.2
FN1-225ENST00000494446 TOP2AP11388 1531 aaKnown RBP13.26□□□□□ -0.29
FN1-225ENST00000494446 TARBP1Q13395 1621 aaKnown RBP13.24□□□□□ -0.29
FN1-225ENST00000494446 POTEDQ86YR6 584 aa13.23□□□□□ -0.29
FN1-225ENST00000494446 ABCC8Q09428 1581 aa13.21□□□□□ -0.29
FN1-225ENST00000494446 DNMBPQ6XZF7 1577 aa13.2□□□□□ -0.3
FN1-225ENST00000494446 CLASP1Q7Z460 1538 aa13.19□□□□□ -0.3
FN1-225ENST00000494446 SYNJ1O43426 1573 aa13.16□□□□□ -0.3
FN1-225ENST00000494446 CCDC88BA6NC98 1476 aa13.12□□□□□ -0.31
FN1-225ENST00000494446 SNAPC4Q5SXM2 1469 aa13.12□□□□□ -0.31
FN1-225ENST00000494446 ILDR1Q86SU0 546 aaPredicted RBP13.12□□□□□ -0.31
FN1-225ENST00000494446 CHMP7Q8WUX9 453 aaPredicted RBP13.12□□□□□ -0.31
FN1-225ENST00000494446 POLA1P09884 1462 aaPredicted RBP13.11□□□□□ -0.31
FN1-225ENST00000494446 TDRD9Q8NDG6 1382 aaKnown RBP13.1□□□□□ -0.31
FN1-225ENST00000494446 GAPVD1Q14C86 1478 aa13.1□□□□□ -0.31
FN1-225ENST00000494446 RAD54L2Q9Y4B4 1467 aa13.1□□□□□ -0.31
FN1-225ENST00000494446 KIF13AQ9H1H9 1805 aa13.06□□□□□ -0.32
FN1-225ENST00000494446 SOGA1O94964 1423 aa13.05□□□□□ -0.32
FN1-225ENST00000494446 MAGI1Q96QZ7 1491 aaPredicted RBP13.04□□□□□ -0.32
FN1-225ENST00000494446 WDR97A6NE52 1622 aa13.02□□□□□ -0.32
FN1-225ENST00000494446 SYNJ2O15056 1496 aa13.01□□□□□ -0.33
FN1-225ENST00000494446 PBRM1Q86U86 1689 aa13.01□□□□□ -0.33
FN1-225ENST00000494446 GRIN2BQ13224 1484 aa12.99□□□□□ -0.33
FN1-225ENST00000494446 ERCC6L2Q5T890 1561 aa12.98□□□□□ -0.33
FN1-225ENST00000494446 FGD5Q6ZNL6 1462 aa12.97□□□□□ -0.33
FN1-225ENST00000494446 KDM4FA0A1W2PPD8 638 aa12.92□□□□□ -0.34
FN1-225ENST00000494446 CEP170Q5SW79 1584 aa12.9□□□□□ -0.35
FN1-225ENST00000494446 CUX1P39880 1505 aa12.88□□□□□ -0.35
FN1-225ENST00000494446 TSPOAP1O95153 1857 aa12.87□□□□□ -0.35
FN1-225ENST00000494446 KDM6BO15054 1643 aa12.85□□□□□ -0.35
FN1-225ENST00000494446 FAM69CQ0P6D2 419 aa12.85□□□□□ -0.35
FN1-225ENST00000494446 SHROOM2Q13796 1616 aa12.84□□□□□ -0.35
FN1-225ENST00000494446 ABCA5Q8WWZ7 1642 aa12.83□□□□□ -0.36
FN1-225ENST00000494446 GRIN2AQ12879 1464 aa12.83□□□□□ -0.36
FN1-225ENST00000494446 ABCC10Q5T3U5 1492 aa12.8□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms