RNA–Protein interactions for RNA: ENST00000487384.5

HOXA9-204, Transcript of homeobox A9, humanhuman

TSL 3

Gene HOXA9, Length 693 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA9-204ENST00000487384 NISCHQ9Y2I1 1504 aa21.34■■□□□ 1.01
HOXA9-204ENST00000487384 ABCC9O60706 1549 aa19.56■□□□□ 0.72
HOXA9-204ENST00000487384 CCDC180Q9P1Z9 1646 aa19.26■□□□□ 0.67
HOXA9-204ENST00000487384 DNAJC5BQ9UF47 199 aa18.57■□□□□ 0.56
HOXA9-204ENST00000487384 RB1CC1Q8TDY2 1594 aa18.46■□□□□ 0.55
HOXA9-204ENST00000487384 NACADO15069 1562 aa18.25■□□□□ 0.51
HOXA9-204ENST00000487384 DCAF8L2P0C7V8 631 aa18.23■□□□□ 0.51
HOXA9-204ENST00000487384 PABPN1Q86U42 306 aaKnown RBP eCLIP18.19■□□□□ 0.5
HOXA9-204ENST00000487384 UNC13AQ9UPW8 1703 aa18.15■□□□□ 0.5
HOXA9-204ENST00000487384 BICRAQ9NZM4 1560 aa17.96■□□□□ 0.46
HOXA9-204ENST00000487384 MYO15BQ96JP2 1530 aa17.86■□□□□ 0.45
HOXA9-204ENST00000487384 CC2D2AQ9P2K1 1620 aa17.65■□□□□ 0.42
HOXA9-204ENST00000487384 AEBP2Q6ZN18 517 aaPredicted RBP17.65■□□□□ 0.42
HOXA9-204ENST00000487384 ZCCHC6Q5VYS8 1495 aaKnown RBP17.63■□□□□ 0.41
HOXA9-204ENST00000487384 CECR2Q9BXF3 1484 aa17.62■□□□□ 0.41
HOXA9-204ENST00000487384 SCRIBQ14160 1630 aa17.61■□□□□ 0.41
HOXA9-204ENST00000487384 SHROOM4Q9ULL8 1493 aa17.57■□□□□ 0.4
HOXA9-204ENST00000487384 DCAF1Q9Y4B6 1507 aa17.56■□□□□ 0.4
HOXA9-204ENST00000487384 CHIC1Q5VXU3 224 aa17.54■□□□□ 0.4
HOXA9-204ENST00000487384 EIF4G1Q04637 1599 aaKnown RBP17.53■□□□□ 0.4
HOXA9-204ENST00000487384 DNAJC5Q9H3Z4 198 aa17.19■□□□□ 0.34
HOXA9-204ENST00000487384 ERCC6Q03468 1493 aa16.9■□□□□ 0.3
HOXA9-204ENST00000487384 CUX2O14529 1486 aa16.88■□□□□ 0.29
HOXA9-204ENST00000487384 NCAPD3P42695 1498 aa16.84■□□□□ 0.29
HOXA9-204ENST00000487384 ATAD2BQ9ULI0 1458 aa16.79■□□□□ 0.28
HOXA9-204ENST00000487384 NESP48681 1621 aa16.74■□□□□ 0.27
HOXA9-204ENST00000487384 SMARCA4P51532 1647 aa16.74■□□□□ 0.27
HOXA9-204ENST00000487384 SMARCA2P51531 1590 aa16.72■□□□□ 0.27
HOXA9-204ENST00000487384 HMGXB3Q12766 1538 aa16.7■□□□□ 0.26
HOXA9-204ENST00000487384 BAZ1BQ9UIG0 1483 aaKnown RBP16.63■□□□□ 0.25
HOXA9-204ENST00000487384 THOC2Q8NI27 1593 aaKnown RBP16.6■□□□□ 0.25
HOXA9-204ENST00000487384 BAZ1AQ9NRL2 1556 aaPredicted RBP16.58■□□□□ 0.24
HOXA9-204ENST00000487384 KIF21AQ7Z4S6 1674 aa16.55■□□□□ 0.24
HOXA9-204ENST00000487384 LAMC3Q9Y6N6 1575 aa16.52■□□□□ 0.24
HOXA9-204ENST00000487384 PEG3Q9GZU2 1588 aa16.51■□□□□ 0.23
HOXA9-204ENST00000487384 MROH2BQ7Z745 1585 aa16.47■□□□□ 0.23
HOXA9-204ENST00000487384 PDS5BQ9NTI5 1447 aa16.44■□□□□ 0.22
HOXA9-204ENST00000487384 TRIM41Q8WV44 630 aa16.42■□□□□ 0.22
HOXA9-204ENST00000487384 CADPSQ9ULU8 1353 aa16.33■□□□□ 0.2
HOXA9-204ENST00000487384 MRC2Q9UBG0 1479 aa16.32■□□□□ 0.2
HOXA9-204ENST00000487384 WIZO95785 1651 aa16.3■□□□□ 0.2
HOXA9-204ENST00000487384 WDR62O43379 1518 aa16.28■□□□□ 0.2
HOXA9-204ENST00000487384 CEP164Q9UPV0 1460 aa16.22■□□□□ 0.19
HOXA9-204ENST00000487384 FANCD2Q9BXW9 1451 aa16.17■□□□□ 0.18
HOXA9-204ENST00000487384 OSCARQ8IYS5 282 aa16.11■□□□□ 0.17
HOXA9-204ENST00000487384 CFTRP13569 1480 aa16.1■□□□□ 0.17
HOXA9-204ENST00000487384 URB2Q14146 1524 aaKnown RBP16.07■□□□□ 0.16
HOXA9-204ENST00000487384 TOP2AP11388 1531 aaKnown RBP16.02■□□□□ 0.15
HOXA9-204ENST00000487384 RSF1Q96T23 1441 aaPredicted RBP16.02■□□□□ 0.15
HOXA9-204ENST00000487384 PRDM2Q13029 1718 aa15.99■□□□□ 0.15
HOXA9-204ENST00000487384 RIMBP3CA6NJZ7 1639 aa15.97■□□□□ 0.15
HOXA9-204ENST00000487384 RIMBP3BA6NNM3 1639 aa15.97■□□□□ 0.15
HOXA9-204ENST00000487384 RIMBP3Q9UFD9 1639 aa15.97■□□□□ 0.15
HOXA9-204ENST00000487384 ZNF608Q9ULD9 1512 aaPredicted RBP15.93■□□□□ 0.14
HOXA9-204ENST00000487384 IFT140Q96RY7 1462 aa15.87■□□□□ 0.13
HOXA9-204ENST00000487384 CCDC88BA6NC98 1476 aa15.86■□□□□ 0.13
HOXA9-204ENST00000487384 ARHGEF11O15085 1522 aa15.86■□□□□ 0.13
HOXA9-204ENST00000487384 TOPBP1Q92547 1522 aa15.84■□□□□ 0.13
HOXA9-204ENST00000487384 EIF4G3O43432 1585 aaKnown RBP15.83■□□□□ 0.12
HOXA9-204ENST00000487384 CHD1O14646 1710 aa15.8■□□□□ 0.12
HOXA9-204ENST00000487384 CYB5RLQ6IPT4 315 aa15.8■□□□□ 0.12
HOXA9-204ENST00000487384 DNMBPQ6XZF7 1577 aa15.76■□□□□ 0.11
HOXA9-204ENST00000487384 AQRO60306 1485 aaKnown RBP eCLIP15.75■□□□□ 0.11
HOXA9-204ENST00000487384 ABCC8Q09428 1581 aa15.74■□□□□ 0.11
HOXA9-204ENST00000487384 TARBP1Q13395 1621 aaKnown RBP15.73■□□□□ 0.11
HOXA9-204ENST00000487384 FBLN2P98095 1184 aa15.73■□□□□ 0.11
HOXA9-204ENST00000487384 TRHP20396 242 aaPredicted RBP15.72■□□□□ 0.11
HOXA9-204ENST00000487384 ARAP1Q96P48 1450 aa15.7■□□□□ 0.1
HOXA9-204ENST00000487384 POLA1P09884 1462 aaPredicted RBP15.66■□□□□ 0.1
HOXA9-204ENST00000487384 RAD54L2Q9Y4B4 1467 aa15.65■□□□□ 0.1
HOXA9-204ENST00000487384 TDRD9Q8NDG6 1382 aaKnown RBP15.62■□□□□ 0.09
HOXA9-204ENST00000487384 SOGA1O94964 1423 aa15.59■□□□□ 0.09
HOXA9-204ENST00000487384 SNAPC4Q5SXM2 1469 aa15.57■□□□□ 0.08
HOXA9-204ENST00000487384 FGD5Q6ZNL6 1462 aa15.54■□□□□ 0.08
HOXA9-204ENST00000487384 CLASP1Q7Z460 1538 aa15.53■□□□□ 0.08
HOXA9-204ENST00000487384 CHMP7Q8WUX9 453 aaPredicted RBP15.53■□□□□ 0.08
HOXA9-204ENST00000487384 SYNJ1O43426 1573 aa15.51■□□□□ 0.07
HOXA9-204ENST00000487384 CUX1P39880 1505 aa15.49■□□□□ 0.07
HOXA9-204ENST00000487384 WDR97A6NE52 1622 aa15.49■□□□□ 0.07
HOXA9-204ENST00000487384 MAGI1Q96QZ7 1491 aaPredicted RBP15.48■□□□□ 0.07
HOXA9-204ENST00000487384 PHF23Q9BUL5 403 aaPredicted RBP15.48■□□□□ 0.07
HOXA9-204ENST00000487384 GRIN2BQ13224 1484 aa15.46■□□□□ 0.07
HOXA9-204ENST00000487384 PBRM1Q86U86 1689 aa15.46■□□□□ 0.07
HOXA9-204ENST00000487384 SYNJ2O15056 1496 aa15.45■□□□□ 0.06
HOXA9-204ENST00000487384 GAPVD1Q14C86 1478 aa15.4■□□□□ 0.06
HOXA9-204ENST00000487384 ABCA5Q8WWZ7 1642 aa15.35■□□□□ 0.05
HOXA9-204ENST00000487384 ERCC6L2Q5T890 1561 aa15.33■□□□□ 0.05
HOXA9-204ENST00000487384 ABCA10Q8WWZ4 1543 aa15.32■□□□□ 0.04
HOXA9-204ENST00000487384 GRIN2AQ12879 1464 aa15.28■□□□□ 0.04
HOXA9-204ENST00000487384 CEP170Q5SW79 1584 aa15.26■□□□□ 0.03
HOXA9-204ENST00000487384 ADAMTS12P58397 1594 aa15.25■□□□□ 0.03
HOXA9-204ENST00000487384 NUP160Q12769 1436 aa15.21■□□□□ 0.03
HOXA9-204ENST00000487384 WRNQ14191 1432 aaPredicted RBP eCLIP15.21■□□□□ 0.03
HOXA9-204ENST00000487384 SUPT5HO00267 1087 aaKnown RBP15.21■□□□□ 0.03
HOXA9-204ENST00000487384 KIF13AQ9H1H9 1805 aa15.2■□□□□ 0.02
HOXA9-204ENST00000487384 SHROOM2Q13796 1616 aa15.2■□□□□ 0.02
HOXA9-204ENST00000487384 BIVM-ERCC5R4GMW8 1640 aa15.17■□□□□ 0.02
HOXA9-204ENST00000487384 TOP2BQ02880 1626 aa15.17■□□□□ 0.02
HOXA9-204ENST00000487384 FHAD1B1AJZ9 1412 aa15.17■□□□□ 0.02
HOXA9-204ENST00000487384 ERICH3Q5RHP9 1530 aa15.12■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 50.6 ms