RNA–Protein interactions for RNA: ENST00000485424.1

UBA3-210, Transcript of ubiquitin like modifier activating enzyme 3, humanhuman

TSL 2

Gene UBA3, Length 652 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBA3-210ENST00000485424 NISCHQ9Y2I1 1504 aa33.4■■■□□ 2.94
UBA3-210ENST00000485424 AEBP2Q6ZN18 517 aaPredicted RBP30.27■■■□□ 2.44
UBA3-210ENST00000485424 CCDC180Q9P1Z9 1646 aa30.23■■■□□ 2.43
UBA3-210ENST00000485424 ABCC9O60706 1549 aa30.06■■■□□ 2.4
UBA3-210ENST00000485424 RB1CC1Q8TDY2 1594 aa28.68■■■□□ 2.18
UBA3-210ENST00000485424 NACADO15069 1562 aa28.44■■■□□ 2.14
UBA3-210ENST00000485424 UNC13AQ9UPW8 1703 aa28.33■■■□□ 2.13
UBA3-210ENST00000485424 CHIC1Q5VXU3 224 aa28.3■■■□□ 2.12
UBA3-210ENST00000485424 DNAJC5BQ9UF47 199 aa28.16■■■□□ 2.1
UBA3-210ENST00000485424 MYO15BQ96JP2 1530 aa27.99■■■□□ 2.07
UBA3-210ENST00000485424 DCAF8L2P0C7V8 631 aa27.99■■■□□ 2.07
UBA3-210ENST00000485424 BICRAQ9NZM4 1560 aa27.88■■■□□ 2.05
UBA3-210ENST00000485424 PABPN1Q86U42 306 aaKnown RBP eCLIP27.84■■■□□ 2.05
UBA3-210ENST00000485424 ZCCHC6Q5VYS8 1495 aaKnown RBP27.7■■■□□ 2.03
UBA3-210ENST00000485424 DCAF1Q9Y4B6 1507 aa27.62■■■□□ 2.01
UBA3-210ENST00000485424 SCRIBQ14160 1630 aa27.44■■□□□ 1.98
UBA3-210ENST00000485424 SHROOM4Q9ULL8 1493 aa27.44■■□□□ 1.98
UBA3-210ENST00000485424 CC2D2AQ9P2K1 1620 aa27.27■■□□□ 1.96
UBA3-210ENST00000485424 EIF4G1Q04637 1599 aaKnown RBP27.17■■□□□ 1.94
UBA3-210ENST00000485424 CECR2Q9BXF3 1484 aa27.08■■□□□ 1.93
UBA3-210ENST00000485424 SMARCA4P51532 1647 aa26.18■■□□□ 1.78
UBA3-210ENST00000485424 NCAPD3P42695 1498 aa26.15■■□□□ 1.78
UBA3-210ENST00000485424 ATAD2BQ9ULI0 1458 aa26.09■■□□□ 1.77
UBA3-210ENST00000485424 HMGXB3Q12766 1538 aa26.09■■□□□ 1.77
UBA3-210ENST00000485424 SMARCA2P51531 1590 aa26.08■■□□□ 1.77
UBA3-210ENST00000485424 CUX2O14529 1486 aa25.98■■□□□ 1.75
UBA3-210ENST00000485424 BAZ1AQ9NRL2 1556 aaPredicted RBP25.97■■□□□ 1.75
UBA3-210ENST00000485424 ERCC6Q03468 1493 aa25.95■■□□□ 1.74
UBA3-210ENST00000485424 SENP3Q9H4L4 574 aaPredicted RBP25.94■■□□□ 1.74
UBA3-210ENST00000485424 PEG3Q9GZU2 1588 aa25.91■■□□□ 1.74
UBA3-210ENST00000485424 DNAJC5Q9H3Z4 198 aa25.9■■□□□ 1.74
UBA3-210ENST00000485424 BAZ1BQ9UIG0 1483 aaKnown RBP25.85■■□□□ 1.73
UBA3-210ENST00000485424 NESP48681 1621 aa25.84■■□□□ 1.73
UBA3-210ENST00000485424 MROH2BQ7Z745 1585 aa25.74■■□□□ 1.71
UBA3-210ENST00000485424 THOC2Q8NI27 1593 aaKnown RBP25.74■■□□□ 1.71
UBA3-210ENST00000485424 KIF21AQ7Z4S6 1674 aa25.73■■□□□ 1.71
UBA3-210ENST00000485424 LAMC3Q9Y6N6 1575 aa25.71■■□□□ 1.71
UBA3-210ENST00000485424 WIZO95785 1651 aa25.55■■□□□ 1.68
UBA3-210ENST00000485424 PHF23Q9BUL5 403 aaPredicted RBP25.47■■□□□ 1.67
UBA3-210ENST00000485424 PDS5BQ9NTI5 1447 aa25.41■■□□□ 1.66
UBA3-210ENST00000485424 CADPSQ9ULU8 1353 aa25.31■■□□□ 1.64
UBA3-210ENST00000485424 WDR62O43379 1518 aa25.28■■□□□ 1.64
UBA3-210ENST00000485424 MRC2Q9UBG0 1479 aa25.27■■□□□ 1.64
UBA3-210ENST00000485424 PRDM2Q13029 1718 aa25.22■■□□□ 1.63
UBA3-210ENST00000485424 CEP164Q9UPV0 1460 aa25.15■■□□□ 1.62
UBA3-210ENST00000485424 TOP2AP11388 1531 aaKnown RBP25.15■■□□□ 1.62
UBA3-210ENST00000485424 RSF1Q96T23 1441 aaPredicted RBP25.1■■□□□ 1.61
UBA3-210ENST00000485424 FANCD2Q9BXW9 1451 aa25.09■■□□□ 1.61
UBA3-210ENST00000485424 CFTRP13569 1480 aa25.07■■□□□ 1.6
UBA3-210ENST00000485424 URB2Q14146 1524 aaKnown RBP24.94■■□□□ 1.58
UBA3-210ENST00000485424 CCDC88BA6NC98 1476 aa24.77■■□□□ 1.56
UBA3-210ENST00000485424 TRIM41Q8WV44 630 aa24.73■■□□□ 1.55
UBA3-210ENST00000485424 TOPBP1Q92547 1522 aa24.66■■□□□ 1.54
UBA3-210ENST00000485424 IFT140Q96RY7 1462 aa24.63■■□□□ 1.53
UBA3-210ENST00000485424 EIF4G3O43432 1585 aaKnown RBP24.63■■□□□ 1.53
UBA3-210ENST00000485424 ZNF608Q9ULD9 1512 aaPredicted RBP24.62■■□□□ 1.53
UBA3-210ENST00000485424 DNMBPQ6XZF7 1577 aa24.61■■□□□ 1.53
UBA3-210ENST00000485424 OSCARQ8IYS5 282 aa24.6■■□□□ 1.53
UBA3-210ENST00000485424 RIMBP3CA6NJZ7 1639 aa24.57■■□□□ 1.52
UBA3-210ENST00000485424 RIMBP3BA6NNM3 1639 aa24.57■■□□□ 1.52
UBA3-210ENST00000485424 RIMBP3Q9UFD9 1639 aa24.57■■□□□ 1.52
UBA3-210ENST00000485424 CHD1O14646 1710 aa24.56■■□□□ 1.52
UBA3-210ENST00000485424 ABCC8Q09428 1581 aa24.54■■□□□ 1.52
UBA3-210ENST00000485424 TARBP1Q13395 1621 aaKnown RBP24.53■■□□□ 1.52
UBA3-210ENST00000485424 ARHGEF11O15085 1522 aa24.4■■□□□ 1.5
UBA3-210ENST00000485424 POLA1P09884 1462 aaPredicted RBP24.38■■□□□ 1.49
UBA3-210ENST00000485424 AQRO60306 1485 aaKnown RBP eCLIP24.32■■□□□ 1.481e-9■■■■■ 37.7
UBA3-210ENST00000485424 WDR97A6NE52 1622 aa24.28■■□□□ 1.48
UBA3-210ENST00000485424 RAD54L2Q9Y4B4 1467 aa24.26■■□□□ 1.47
UBA3-210ENST00000485424 FGD5Q6ZNL6 1462 aa24.22■■□□□ 1.47
UBA3-210ENST00000485424 PBRM1Q86U86 1689 aa24.21■■□□□ 1.47
UBA3-210ENST00000485424 CUX1P39880 1505 aa24.21■■□□□ 1.47
UBA3-210ENST00000485424 FOXD1Q16676 465 aa24.2■■□□□ 1.46
UBA3-210ENST00000485424 SOGA1O94964 1423 aa24.17■■□□□ 1.46
UBA3-210ENST00000485424 SNAPC4Q5SXM2 1469 aa24.14■■□□□ 1.46
UBA3-210ENST00000485424 ARAP1Q96P48 1450 aa24.14■■□□□ 1.46
UBA3-210ENST00000485424 CLASP1Q7Z460 1538 aa24.12■■□□□ 1.45
UBA3-210ENST00000485424 TDRD9Q8NDG6 1382 aaKnown RBP24.12■■□□□ 1.45
UBA3-210ENST00000485424 SYNJ1O43426 1573 aa24.08■■□□□ 1.45
UBA3-210ENST00000485424 MAGI1Q96QZ7 1491 aaPredicted RBP24.08■■□□□ 1.45
UBA3-210ENST00000485424 FBLN2P98095 1184 aa24.08■■□□□ 1.45
UBA3-210ENST00000485424 ABCA5Q8WWZ7 1642 aa24.04■■□□□ 1.44
UBA3-210ENST00000485424 GRIN2BQ13224 1484 aa24.03■■□□□ 1.44
UBA3-210ENST00000485424 CYB5RLQ6IPT4 315 aa24.03■■□□□ 1.44
UBA3-210ENST00000485424 SYNJ2O15056 1496 aa23.98■■□□□ 1.43
UBA3-210ENST00000485424 ABCA10Q8WWZ4 1543 aa23.94■■□□□ 1.42
UBA3-210ENST00000485424 GAPVD1Q14C86 1478 aa23.94■■□□□ 1.42
UBA3-210ENST00000485424 BIVM-ERCC5R4GMW8 1640 aa23.93■■□□□ 1.42
UBA3-210ENST00000485424 CHMP7Q8WUX9 453 aaPredicted RBP23.89■■□□□ 1.41
UBA3-210ENST00000485424 SUPT5HO00267 1087 aaKnown RBP23.86■■□□□ 1.41
UBA3-210ENST00000485424 TOP2BQ02880 1626 aa23.85■■□□□ 1.41
UBA3-210ENST00000485424 ADAMTS12P58397 1594 aa23.84■■□□□ 1.41
UBA3-210ENST00000485424 TRHP20396 242 aaPredicted RBP23.79■■□□□ 1.4
UBA3-210ENST00000485424 GRIN2AQ12879 1464 aa23.75■■□□□ 1.39
UBA3-210ENST00000485424 CEP170Q5SW79 1584 aa23.75■■□□□ 1.39
UBA3-210ENST00000485424 WRNQ14191 1432 aaPredicted RBP eCLIP23.74■■□□□ 1.39
UBA3-210ENST00000485424 ERCC6L2Q5T890 1561 aa23.73■■□□□ 1.39
UBA3-210ENST00000485424 SHROOM2Q13796 1616 aa23.72■■□□□ 1.39
UBA3-210ENST00000485424 ERICH3Q5RHP9 1530 aa23.66■■□□□ 1.38
UBA3-210ENST00000485424 NUP160Q12769 1436 aa23.66■■□□□ 1.38
Retrieved 100 of 20,778 RNA–protein pairs in 189.4 ms