RNA–Protein interactions for RNA: ENST00000481606.1

TFE3-202, Transcript of transcription factor binding to IGHM enhancer 3, humanhuman

TSL 2

Gene TFE3, Length 439 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TFE3-202ENST00000481606 NISCHQ9Y2I1 1504 aa14.08□□□□□ -0.16
TFE3-202ENST00000481606 ABCC9O60706 1549 aa12.88□□□□□ -0.35
TFE3-202ENST00000481606 CCDC180Q9P1Z9 1646 aa12.75□□□□□ -0.37
TFE3-202ENST00000481606 RB1CC1Q8TDY2 1594 aa12.18□□□□□ -0.46
TFE3-202ENST00000481606 DNAJC5BQ9UF47 199 aa12.14□□□□□ -0.47
TFE3-202ENST00000481606 AEBP2Q6ZN18 517 aaPredicted RBP12.12□□□□□ -0.47
TFE3-202ENST00000481606 NACADO15069 1562 aa12.05□□□□□ -0.48
TFE3-202ENST00000481606 CHIC1Q5VXU3 224 aa11.98□□□□□ -0.49
TFE3-202ENST00000481606 UNC13AQ9UPW8 1703 aa11.94□□□□□ -0.5
TFE3-202ENST00000481606 DCAF8L2P0C7V8 631 aa11.91□□□□□ -0.5
TFE3-202ENST00000481606 PABPN1Q86U42 306 aaKnown RBP eCLIP11.91□□□□□ -0.5
TFE3-202ENST00000481606 BICRAQ9NZM4 1560 aa11.84□□□□□ -0.51
TFE3-202ENST00000481606 MYO15BQ96JP2 1530 aa11.82□□□□□ -0.52
TFE3-202ENST00000481606 ZCCHC6Q5VYS8 1495 aaKnown RBP11.66□□□□□ -0.54
TFE3-202ENST00000481606 SHROOM4Q9ULL8 1493 aa11.66□□□□□ -0.54
TFE3-202ENST00000481606 SCRIBQ14160 1630 aa11.62□□□□□ -0.55
TFE3-202ENST00000481606 CC2D2AQ9P2K1 1620 aa11.62□□□□□ -0.55
TFE3-202ENST00000481606 DCAF1Q9Y4B6 1507 aa11.61□□□□□ -0.55
TFE3-202ENST00000481606 CECR2Q9BXF3 1484 aa11.6□□□□□ -0.55
TFE3-202ENST00000481606 EIF4G1Q04637 1599 aaKnown RBP11.56□□□□□ -0.56
TFE3-202ENST00000481606 DNAJC5Q9H3Z4 198 aa11.25□□□□□ -0.61
TFE3-202ENST00000481606 CUX2O14529 1486 aa11.15□□□□□ -0.62
TFE3-202ENST00000481606 ERCC6Q03468 1493 aa11.12□□□□□ -0.63
TFE3-202ENST00000481606 NCAPD3P42695 1498 aa11.1□□□□□ -0.63
TFE3-202ENST00000481606 ATAD2BQ9ULI0 1458 aa11.06□□□□□ -0.64
TFE3-202ENST00000481606 HMGXB3Q12766 1538 aa11.05□□□□□ -0.64
TFE3-202ENST00000481606 SMARCA2P51531 1590 aa11.05□□□□□ -0.64
TFE3-202ENST00000481606 SMARCA4P51532 1647 aa11.05□□□□□ -0.64
TFE3-202ENST00000481606 NESP48681 1621 aa11.01□□□□□ -0.65
TFE3-202ENST00000481606 BAZ1BQ9UIG0 1483 aaKnown RBP10.97□□□□□ -0.65
TFE3-202ENST00000481606 THOC2Q8NI27 1593 aaKnown RBP10.97□□□□□ -0.65
TFE3-202ENST00000481606 BAZ1AQ9NRL2 1556 aaPredicted RBP10.95□□□□□ -0.66
TFE3-202ENST00000481606 PEG3Q9GZU2 1588 aa10.92□□□□□ -0.66
TFE3-202ENST00000481606 LAMC3Q9Y6N6 1575 aa10.91□□□□□ -0.66
TFE3-202ENST00000481606 KIF21AQ7Z4S6 1674 aa10.9□□□□□ -0.66
TFE3-202ENST00000481606 MROH2BQ7Z745 1585 aa10.86□□□□□ -0.67
TFE3-202ENST00000481606 PDS5BQ9NTI5 1447 aa10.82□□□□□ -0.68
TFE3-202ENST00000481606 MRC2Q9UBG0 1479 aa10.78□□□□□ -0.68
TFE3-202ENST00000481606 WDR62O43379 1518 aa10.76□□□□□ -0.69
TFE3-202ENST00000481606 CADPSQ9ULU8 1353 aa10.75□□□□□ -0.69
TFE3-202ENST00000481606 TRIM41Q8WV44 630 aa10.74□□□□□ -0.69
TFE3-202ENST00000481606 WIZO95785 1651 aa10.73□□□□□ -0.69
TFE3-202ENST00000481606 CEP164Q9UPV0 1460 aa10.7□□□□□ -0.7
TFE3-202ENST00000481606 FANCD2Q9BXW9 1451 aa10.66□□□□□ -0.7
TFE3-202ENST00000481606 CFTRP13569 1480 aa10.61□□□□□ -0.71
TFE3-202ENST00000481606 TOP2AP11388 1531 aaKnown RBP10.59□□□□□ -0.71
TFE3-202ENST00000481606 URB2Q14146 1524 aaKnown RBP10.59□□□□□ -0.71
TFE3-202ENST00000481606 PRDM2Q13029 1718 aa10.57□□□□□ -0.72
TFE3-202ENST00000481606 OSCARQ8IYS5 282 aa10.55□□□□□ -0.72
TFE3-202ENST00000481606 RSF1Q96T23 1441 aaPredicted RBP10.55□□□□□ -0.72
TFE3-202ENST00000481606 RIMBP3CA6NJZ7 1639 aa10.51□□□□□ -0.73
TFE3-202ENST00000481606 RIMBP3BA6NNM3 1639 aa10.51□□□□□ -0.73
TFE3-202ENST00000481606 RIMBP3Q9UFD9 1639 aa10.51□□□□□ -0.73
TFE3-202ENST00000481606 IFT140Q96RY7 1462 aa10.49□□□□□ -0.73
TFE3-202ENST00000481606 ZNF608Q9ULD9 1512 aaPredicted RBP10.48□□□□□ -0.73
TFE3-202ENST00000481606 PHF23Q9BUL5 403 aaPredicted RBP10.47□□□□□ -0.73
TFE3-202ENST00000481606 EIF4G3O43432 1585 aaKnown RBP10.46□□□□□ -0.74
TFE3-202ENST00000481606 ARHGEF11O15085 1522 aa10.45□□□□□ -0.74
TFE3-202ENST00000481606 TOPBP1Q92547 1522 aa10.45□□□□□ -0.74
TFE3-202ENST00000481606 CCDC88BA6NC98 1476 aa10.44□□□□□ -0.74
TFE3-202ENST00000481606 DNMBPQ6XZF7 1577 aa10.42□□□□□ -0.74
TFE3-202ENST00000481606 CHD1O14646 1710 aa10.41□□□□□ -0.74
TFE3-202ENST00000481606 SENP3Q9H4L4 574 aaPredicted RBP10.4□□□□□ -0.74
TFE3-202ENST00000481606 ABCC8Q09428 1581 aa10.39□□□□□ -0.75
TFE3-202ENST00000481606 TARBP1Q13395 1621 aaKnown RBP10.37□□□□□ -0.75
TFE3-202ENST00000481606 AQRO60306 1485 aaKnown RBP eCLIP10.35□□□□□ -0.75
TFE3-202ENST00000481606 ARAP1Q96P48 1450 aa10.35□□□□□ -0.75
TFE3-202ENST00000481606 CYB5RLQ6IPT4 315 aa10.33□□□□□ -0.76
TFE3-202ENST00000481606 POLA1P09884 1462 aaPredicted RBP10.33□□□□□ -0.76
TFE3-202ENST00000481606 FBLN2P98095 1184 aa10.3□□□□□ -0.76
TFE3-202ENST00000481606 RAD54L2Q9Y4B4 1467 aa10.29□□□□□ -0.76
TFE3-202ENST00000481606 TRHP20396 242 aaPredicted RBP10.28□□□□□ -0.76
TFE3-202ENST00000481606 SNAPC4Q5SXM2 1469 aa10.27□□□□□ -0.77
TFE3-202ENST00000481606 CLASP1Q7Z460 1538 aa10.27□□□□□ -0.77
TFE3-202ENST00000481606 WDR97A6NE52 1622 aa10.26□□□□□ -0.77
TFE3-202ENST00000481606 FGD5Q6ZNL6 1462 aa10.26□□□□□ -0.77
TFE3-202ENST00000481606 TDRD9Q8NDG6 1382 aaKnown RBP10.26□□□□□ -0.77
TFE3-202ENST00000481606 SOGA1O94964 1423 aa10.25□□□□□ -0.77
TFE3-202ENST00000481606 SYNJ1O43426 1573 aa10.24□□□□□ -0.77
TFE3-202ENST00000481606 MAGI1Q96QZ7 1491 aaPredicted RBP10.23□□□□□ -0.77
TFE3-202ENST00000481606 CUX1P39880 1505 aa10.22□□□□□ -0.77
TFE3-202ENST00000481606 PBRM1Q86U86 1689 aa10.21□□□□□ -0.78
TFE3-202ENST00000481606 GRIN2BQ13224 1484 aa10.2□□□□□ -0.78
TFE3-202ENST00000481606 SYNJ2O15056 1496 aa10.19□□□□□ -0.78
TFE3-202ENST00000481606 CHMP7Q8WUX9 453 aaPredicted RBP10.18□□□□□ -0.78
TFE3-202ENST00000481606 GAPVD1Q14C86 1478 aa10.15□□□□□ -0.78
TFE3-202ENST00000481606 ABCA5Q8WWZ7 1642 aa10.15□□□□□ -0.79
TFE3-202ENST00000481606 ABCA10Q8WWZ4 1543 aa10.12□□□□□ -0.79
TFE3-202ENST00000481606 ADAMTS12P58397 1594 aa10.09□□□□□ -0.79
TFE3-202ENST00000481606 ERCC6L2Q5T890 1561 aa10.09□□□□□ -0.79
TFE3-202ENST00000481606 GRIN2AQ12879 1464 aa10.08□□□□□ -0.8
TFE3-202ENST00000481606 CEP170Q5SW79 1584 aa10.07□□□□□ -0.8
TFE3-202ENST00000481606 NUP160Q12769 1436 aa10.05□□□□□ -0.8
TFE3-202ENST00000481606 SHROOM2Q13796 1616 aa10.04□□□□□ -0.8
TFE3-202ENST00000481606 BIVM-ERCC5R4GMW8 1640 aa10.04□□□□□ -0.8
TFE3-202ENST00000481606 WRNQ14191 1432 aaPredicted RBP eCLIP10.02□□□□□ -0.81
TFE3-202ENST00000481606 TOP2BQ02880 1626 aa10.01□□□□□ -0.81
TFE3-202ENST00000481606 FHAD1B1AJZ9 1412 aa10□□□□□ -0.81
TFE3-202ENST00000481606 KIF13AQ9H1H9 1805 aa10□□□□□ -0.81
TFE3-202ENST00000481606 ERICH3Q5RHP9 1530 aa9.99□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 8.9 ms