RNA–Protein interactions for RNA: ENST00000479300.1

VCP-205, Transcript of valosin containing protein, humanhuman

TSL 1 (best)

Gene VCP, Length 559 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCP-205ENST00000479300 NISCHQ9Y2I1 1504 aa17.03■□□□□ 0.32
VCP-205ENST00000479300 ABCC9O60706 1549 aa15.6■□□□□ 0.09
VCP-205ENST00000479300 CCDC180Q9P1Z9 1646 aa15.35■□□□□ 0.05
VCP-205ENST00000479300 DNAJC5BQ9UF47 199 aa14.91□□□□□ -0.02
VCP-205ENST00000479300 AEBP2Q6ZN18 517 aaPredicted RBP14.87□□□□□ -0.03
VCP-205ENST00000479300 CHIC1Q5VXU3 224 aa14.77□□□□□ -0.05
VCP-205ENST00000479300 RB1CC1Q8TDY2 1594 aa14.7□□□□□ -0.06
VCP-205ENST00000479300 NACADO15069 1562 aa14.56□□□□□ -0.08
VCP-205ENST00000479300 PABPN1Q86U42 306 aaKnown RBP eCLIP14.49□□□□□ -0.09
VCP-205ENST00000479300 UNC13AQ9UPW8 1703 aa14.44□□□□□ -0.1
VCP-205ENST00000479300 BICRAQ9NZM4 1560 aa14.39□□□□□ -0.11
VCP-205ENST00000479300 DCAF8L2P0C7V8 631 aa14.38□□□□□ -0.11
VCP-205ENST00000479300 MYO15BQ96JP2 1530 aa14.29□□□□□ -0.12
VCP-205ENST00000479300 CC2D2AQ9P2K1 1620 aa14.08□□□□□ -0.15
VCP-205ENST00000479300 ZCCHC6Q5VYS8 1495 aaKnown RBP14.07□□□□□ -0.16
VCP-205ENST00000479300 CECR2Q9BXF3 1484 aa14.06□□□□□ -0.16
VCP-205ENST00000479300 SHROOM4Q9ULL8 1493 aa14.06□□□□□ -0.16
VCP-205ENST00000479300 DCAF1Q9Y4B6 1507 aa14.04□□□□□ -0.16
VCP-205ENST00000479300 SCRIBQ14160 1630 aa14.01□□□□□ -0.17
VCP-205ENST00000479300 EIF4G1Q04637 1599 aaKnown RBP14□□□□□ -0.17
VCP-205ENST00000479300 DNAJC5Q9H3Z4 198 aa13.78□□□□□ -0.2
VCP-205ENST00000479300 CUX2O14529 1486 aa13.5□□□□□ -0.25
VCP-205ENST00000479300 NCAPD3P42695 1498 aa13.47□□□□□ -0.25
VCP-205ENST00000479300 ERCC6Q03468 1493 aa13.42□□□□□ -0.26
VCP-205ENST00000479300 ATAD2BQ9ULI0 1458 aa13.41□□□□□ -0.26
VCP-205ENST00000479300 NESP48681 1621 aa13.38□□□□□ -0.27
VCP-205ENST00000479300 HMGXB3Q12766 1538 aa13.34□□□□□ -0.27
VCP-205ENST00000479300 SMARCA4P51532 1647 aa13.33□□□□□ -0.28
VCP-205ENST00000479300 SMARCA2P51531 1590 aa13.31□□□□□ -0.28
VCP-205ENST00000479300 THOC2Q8NI27 1593 aaKnown RBP13.28□□□□□ -0.28
VCP-205ENST00000479300 BAZ1BQ9UIG0 1483 aaKnown RBP13.23□□□□□ -0.29
VCP-205ENST00000479300 PEG3Q9GZU2 1588 aa13.2□□□□□ -0.3
VCP-205ENST00000479300 BAZ1AQ9NRL2 1556 aaPredicted RBP13.2□□□□□ -0.3
VCP-205ENST00000479300 LAMC3Q9Y6N6 1575 aa13.17□□□□□ -0.3
VCP-205ENST00000479300 KIF21AQ7Z4S6 1674 aa13.17□□□□□ -0.3
VCP-205ENST00000479300 MROH2BQ7Z745 1585 aa13.15□□□□□ -0.3
VCP-205ENST00000479300 PHF23Q9BUL5 403 aaPredicted RBP13.15□□□□□ -0.3
VCP-205ENST00000479300 PDS5BQ9NTI5 1447 aa13.07□□□□□ -0.32
VCP-205ENST00000479300 TRIM41Q8WV44 630 aa13.05□□□□□ -0.32
VCP-205ENST00000479300 CADPSQ9ULU8 1353 aa13.03□□□□□ -0.32
VCP-205ENST00000479300 MRC2Q9UBG0 1479 aa13.02□□□□□ -0.33
VCP-205ENST00000479300 WDR62O43379 1518 aa13.02□□□□□ -0.33
VCP-205ENST00000479300 WIZO95785 1651 aa12.97□□□□□ -0.33
VCP-205ENST00000479300 CEP164Q9UPV0 1460 aa12.91□□□□□ -0.34
VCP-205ENST00000479300 FANCD2Q9BXW9 1451 aa12.89□□□□□ -0.35
VCP-205ENST00000479300 CFTRP13569 1480 aa12.85□□□□□ -0.35
VCP-205ENST00000479300 URB2Q14146 1524 aaKnown RBP12.85□□□□□ -0.35
VCP-205ENST00000479300 OSCARQ8IYS5 282 aa12.81□□□□□ -0.36
VCP-205ENST00000479300 RSF1Q96T23 1441 aaPredicted RBP12.78□□□□□ -0.36
VCP-205ENST00000479300 TOP2AP11388 1531 aaKnown RBP12.77□□□□□ -0.37
VCP-205ENST00000479300 RIMBP3CA6NJZ7 1639 aa12.75□□□□□ -0.37
VCP-205ENST00000479300 RIMBP3BA6NNM3 1639 aa12.75□□□□□ -0.37
VCP-205ENST00000479300 RIMBP3Q9UFD9 1639 aa12.75□□□□□ -0.37
VCP-205ENST00000479300 ZNF608Q9ULD9 1512 aaPredicted RBP12.72□□□□□ -0.37
VCP-205ENST00000479300 PRDM2Q13029 1718 aa12.68□□□□□ -0.38
VCP-205ENST00000479300 ARHGEF11O15085 1522 aa12.67□□□□□ -0.38
VCP-205ENST00000479300 IFT140Q96RY7 1462 aa12.65□□□□□ -0.38
VCP-205ENST00000479300 CCDC88BA6NC98 1476 aa12.64□□□□□ -0.39
VCP-205ENST00000479300 TOPBP1Q92547 1522 aa12.63□□□□□ -0.39
VCP-205ENST00000479300 EIF4G3O43432 1585 aaKnown RBP12.62□□□□□ -0.39
VCP-205ENST00000479300 TARBP1Q13395 1621 aaKnown RBP12.57□□□□□ -0.4
VCP-205ENST00000479300 CHD1O14646 1710 aa12.57□□□□□ -0.4
VCP-205ENST00000479300 AQRO60306 1485 aaKnown RBP eCLIP12.56□□□□□ -0.46e-9■■□□□ 11.8
VCP-205ENST00000479300 ARAP1Q96P48 1450 aa12.56□□□□□ -0.4
VCP-205ENST00000479300 DNMBPQ6XZF7 1577 aa12.56□□□□□ -0.4
VCP-205ENST00000479300 CYB5RLQ6IPT4 315 aa12.55□□□□□ -0.4
VCP-205ENST00000479300 ABCC8Q09428 1581 aa12.52□□□□□ -0.41
VCP-205ENST00000479300 POLA1P09884 1462 aaPredicted RBP12.5□□□□□ -0.41
VCP-205ENST00000479300 RAD54L2Q9Y4B4 1467 aa12.47□□□□□ -0.41
VCP-205ENST00000479300 CLASP1Q7Z460 1538 aa12.44□□□□□ -0.42
VCP-205ENST00000479300 TRHP20396 242 aaPredicted RBP12.44□□□□□ -0.42
VCP-205ENST00000479300 FBLN2P98095 1184 aa12.44□□□□□ -0.42
VCP-205ENST00000479300 TDRD9Q8NDG6 1382 aaKnown RBP12.43□□□□□ -0.42
VCP-205ENST00000479300 SNAPC4Q5SXM2 1469 aa12.41□□□□□ -0.42
VCP-205ENST00000479300 SOGA1O94964 1423 aa12.4□□□□□ -0.42
VCP-205ENST00000479300 FGD5Q6ZNL6 1462 aa12.38□□□□□ -0.43
VCP-205ENST00000479300 CUX1P39880 1505 aa12.37□□□□□ -0.43
VCP-205ENST00000479300 WDR97A6NE52 1622 aa12.34□□□□□ -0.43
VCP-205ENST00000479300 SYNJ1O43426 1573 aa12.34□□□□□ -0.43
VCP-205ENST00000479300 MAGI1Q96QZ7 1491 aaPredicted RBP12.34□□□□□ -0.43
VCP-205ENST00000479300 SENP3Q9H4L4 574 aaPredicted RBP12.32□□□□□ -0.44
VCP-205ENST00000479300 GRIN2BQ13224 1484 aa12.32□□□□□ -0.44
VCP-205ENST00000479300 SYNJ2O15056 1496 aa12.31□□□□□ -0.44
VCP-205ENST00000479300 CHMP7Q8WUX9 453 aaPredicted RBP12.3□□□□□ -0.44
VCP-205ENST00000479300 PBRM1Q86U86 1689 aa12.28□□□□□ -0.44
VCP-205ENST00000479300 GAPVD1Q14C86 1478 aa12.27□□□□□ -0.44
VCP-205ENST00000479300 ERCC6L2Q5T890 1561 aa12.26□□□□□ -0.45
VCP-205ENST00000479300 ABCA5Q8WWZ7 1642 aa12.25□□□□□ -0.45
VCP-205ENST00000479300 ABCA10Q8WWZ4 1543 aa12.21□□□□□ -0.45
VCP-205ENST00000479300 CEP170Q5SW79 1584 aa12.18□□□□□ -0.46
VCP-205ENST00000479300 GRIN2AQ12879 1464 aa12.18□□□□□ -0.46
VCP-205ENST00000479300 NUP160Q12769 1436 aa12.17□□□□□ -0.46
VCP-205ENST00000479300 ADAMTS12P58397 1594 aa12.16□□□□□ -0.46
VCP-205ENST00000479300 SHROOM2Q13796 1616 aa12.15□□□□□ -0.47
VCP-205ENST00000479300 KIF13AQ9H1H9 1805 aa12.11□□□□□ -0.47
VCP-205ENST00000479300 WRNQ14191 1432 aaPredicted RBP eCLIP12.09□□□□□ -0.47
VCP-205ENST00000479300 FHAD1B1AJZ9 1412 aa12.08□□□□□ -0.48
VCP-205ENST00000479300 BIVM-ERCC5R4GMW8 1640 aa12.08□□□□□ -0.48
VCP-205ENST00000479300 PLPPR3Q6T4P5 718 aa12.07□□□□□ -0.48
VCP-205ENST00000479300 TOP2BQ02880 1626 aa12.07□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 7.7 ms