RNA–Protein interactions for RNA: ENST00000476777.5

BRCA1-213, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 5

Gene BRCA1, Length 769 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-213ENST00000476777 NISCHQ9Y2I1 1504 aa29.07■■■□□ 2.24
BRCA1-213ENST00000476777 ABCC9O60706 1549 aa26.6■■□□□ 1.85
BRCA1-213ENST00000476777 CCDC180Q9P1Z9 1646 aa26.2■■□□□ 1.78
BRCA1-213ENST00000476777 DNAJC5BQ9UF47 199 aa25.34■■□□□ 1.65
BRCA1-213ENST00000476777 RB1CC1Q8TDY2 1594 aa25.13■■□□□ 1.61
BRCA1-213ENST00000476777 NACADO15069 1562 aa24.88■■□□□ 1.57
BRCA1-213ENST00000476777 PABPN1Q86U42 306 aaKnown RBP eCLIP24.74■■□□□ 1.55
BRCA1-213ENST00000476777 AEBP2Q6ZN18 517 aaPredicted RBP24.73■■□□□ 1.55
BRCA1-213ENST00000476777 DCAF8L2P0C7V8 631 aa24.7■■□□□ 1.54
BRCA1-213ENST00000476777 UNC13AQ9UPW8 1703 aa24.55■■□□□ 1.52
BRCA1-213ENST00000476777 BICRAQ9NZM4 1560 aa24.45■■□□□ 1.5
BRCA1-213ENST00000476777 MYO15BQ96JP2 1530 aa24.45■■□□□ 1.5
BRCA1-213ENST00000476777 SHROOM4Q9ULL8 1493 aa24.07■■□□□ 1.44
BRCA1-213ENST00000476777 ZCCHC6Q5VYS8 1495 aaKnown RBP24.01■■□□□ 1.43
BRCA1-213ENST00000476777 CECR2Q9BXF3 1484 aa24■■□□□ 1.43
BRCA1-213ENST00000476777 CC2D2AQ9P2K1 1620 aa24■■□□□ 1.43
BRCA1-213ENST00000476777 DCAF1Q9Y4B6 1507 aa24■■□□□ 1.43
BRCA1-213ENST00000476777 SCRIBQ14160 1630 aa23.87■■□□□ 1.41
BRCA1-213ENST00000476777 EIF4G1Q04637 1599 aaKnown RBP23.86■■□□□ 1.41
BRCA1-213ENST00000476777 DNAJC5Q9H3Z4 198 aa23.52■■□□□ 1.36
BRCA1-213ENST00000476777 CHIC1Q5VXU3 224 aa23.1■■□□□ 1.29
BRCA1-213ENST00000476777 CUX2O14529 1486 aa23.07■■□□□ 1.28
BRCA1-213ENST00000476777 NCAPD3P42695 1498 aa23.01■■□□□ 1.27
BRCA1-213ENST00000476777 ERCC6Q03468 1493 aa22.98■■□□□ 1.27
BRCA1-213ENST00000476777 ATAD2BQ9ULI0 1458 aa22.89■■□□□ 1.25
BRCA1-213ENST00000476777 HMGXB3Q12766 1538 aa22.77■■□□□ 1.24
BRCA1-213ENST00000476777 SMARCA2P51531 1590 aa22.77■■□□□ 1.24
BRCA1-213ENST00000476777 NESP48681 1621 aa22.76■■□□□ 1.23
BRCA1-213ENST00000476777 SMARCA4P51532 1647 aa22.74■■□□□ 1.23
BRCA1-213ENST00000476777 BAZ1BQ9UIG0 1483 aaKnown RBP22.62■■□□□ 1.21
BRCA1-213ENST00000476777 THOC2Q8NI27 1593 aaKnown RBP22.57■■□□□ 1.2
BRCA1-213ENST00000476777 BAZ1AQ9NRL2 1556 aaPredicted RBP22.57■■□□□ 1.2
BRCA1-213ENST00000476777 PEG3Q9GZU2 1588 aa22.54■■□□□ 1.2
BRCA1-213ENST00000476777 LAMC3Q9Y6N6 1575 aa22.5■■□□□ 1.19
BRCA1-213ENST00000476777 PDS5BQ9NTI5 1447 aa22.41■■□□□ 1.18
BRCA1-213ENST00000476777 KIF21AQ7Z4S6 1674 aa22.41■■□□□ 1.18
BRCA1-213ENST00000476777 MROH2BQ7Z745 1585 aa22.4■■□□□ 1.18
BRCA1-213ENST00000476777 CADPSQ9ULU8 1353 aa22.3■■□□□ 1.16
BRCA1-213ENST00000476777 TRIM41Q8WV44 630 aa22.3■■□□□ 1.16
BRCA1-213ENST00000476777 MRC2Q9UBG0 1479 aa22.24■■□□□ 1.15
BRCA1-213ENST00000476777 WDR62O43379 1518 aa22.2■■□□□ 1.14
BRCA1-213ENST00000476777 WIZO95785 1651 aa22.09■■□□□ 1.13
BRCA1-213ENST00000476777 CEP164Q9UPV0 1460 aa22.07■■□□□ 1.12
BRCA1-213ENST00000476777 FANCD2Q9BXW9 1451 aa22.03■■□□□ 1.12
BRCA1-213ENST00000476777 OSCARQ8IYS5 282 aa21.99■■□□□ 1.11
BRCA1-213ENST00000476777 CFTRP13569 1480 aa21.96■■□□□ 1.11
BRCA1-213ENST00000476777 URB2Q14146 1524 aaKnown RBP21.88■■□□□ 1.09
BRCA1-213ENST00000476777 RSF1Q96T23 1441 aaPredicted RBP21.82■■□□□ 1.08
BRCA1-213ENST00000476777 TOP2AP11388 1531 aaKnown RBP21.79■■□□□ 1.08
BRCA1-213ENST00000476777 RIMBP3CA6NJZ7 1639 aa21.7■■□□□ 1.06
BRCA1-213ENST00000476777 RIMBP3BA6NNM3 1639 aa21.7■■□□□ 1.06
BRCA1-213ENST00000476777 RIMBP3Q9UFD9 1639 aa21.7■■□□□ 1.06
BRCA1-213ENST00000476777 ZNF608Q9ULD9 1512 aaPredicted RBP21.68■■□□□ 1.06
BRCA1-213ENST00000476777 IFT140Q96RY7 1462 aa21.66■■□□□ 1.06
BRCA1-213ENST00000476777 PRDM2Q13029 1718 aa21.63■■□□□ 1.05
BRCA1-213ENST00000476777 ARHGEF11O15085 1522 aa21.61■■□□□ 1.05
BRCA1-213ENST00000476777 CCDC88BA6NC98 1476 aa21.58■■□□□ 1.04
BRCA1-213ENST00000476777 TOPBP1Q92547 1522 aa21.57■■□□□ 1.04
BRCA1-213ENST00000476777 CYB5RLQ6IPT4 315 aa21.5■■□□□ 1.03
BRCA1-213ENST00000476777 EIF4G3O43432 1585 aaKnown RBP21.49■■□□□ 1.03
BRCA1-213ENST00000476777 ABCC8Q09428 1581 aa21.48■■□□□ 1.03
BRCA1-213ENST00000476777 AQRO60306 1485 aaKnown RBP eCLIP21.44■■□□□ 1.02
BRCA1-213ENST00000476777 DNMBPQ6XZF7 1577 aa21.44■■□□□ 1.02
BRCA1-213ENST00000476777 TARBP1Q13395 1621 aaKnown RBP21.4■■□□□ 1.02
BRCA1-213ENST00000476777 CHD1O14646 1710 aa21.39■■□□□ 1.01
BRCA1-213ENST00000476777 ARAP1Q96P48 1450 aa21.39■■□□□ 1.01
BRCA1-213ENST00000476777 TRHP20396 242 aaPredicted RBP21.35■■□□□ 1.01
BRCA1-213ENST00000476777 FBLN2P98095 1184 aa21.35■■□□□ 1.01
BRCA1-213ENST00000476777 POLA1P09884 1462 aaPredicted RBP21.32■■□□□ 1
BRCA1-213ENST00000476777 RAD54L2Q9Y4B4 1467 aa21.26■□□□□ 0.99
BRCA1-213ENST00000476777 TDRD9Q8NDG6 1382 aaKnown RBP21.24■□□□□ 0.99
BRCA1-213ENST00000476777 SOGA1O94964 1423 aa21.22■□□□□ 0.99
BRCA1-213ENST00000476777 SNAPC4Q5SXM2 1469 aa21.19■□□□□ 0.98
BRCA1-213ENST00000476777 CLASP1Q7Z460 1538 aa21.17■□□□□ 0.98
BRCA1-213ENST00000476777 CHMP7Q8WUX9 453 aaPredicted RBP21.14■□□□□ 0.97
BRCA1-213ENST00000476777 FGD5Q6ZNL6 1462 aa21.13■□□□□ 0.97
BRCA1-213ENST00000476777 WDR97A6NE52 1622 aa21.13■□□□□ 0.97
BRCA1-213ENST00000476777 MAGI1Q96QZ7 1491 aaPredicted RBP21.11■□□□□ 0.97
BRCA1-213ENST00000476777 SYNJ1O43426 1573 aa21.1■□□□□ 0.97
BRCA1-213ENST00000476777 GRIN2BQ13224 1484 aa21.07■□□□□ 0.96
BRCA1-213ENST00000476777 CUX1P39880 1505 aa21.07■□□□□ 0.96
BRCA1-213ENST00000476777 SYNJ2O15056 1496 aa21.05■□□□□ 0.96
BRCA1-213ENST00000476777 GAPVD1Q14C86 1478 aa20.97■□□□□ 0.95
BRCA1-213ENST00000476777 SENP3Q9H4L4 574 aaPredicted RBP20.92■□□□□ 0.94
BRCA1-213ENST00000476777 PBRM1Q86U86 1689 aa20.92■□□□□ 0.94
BRCA1-213ENST00000476777 ABCA10Q8WWZ4 1543 aa20.88■□□□□ 0.93
BRCA1-213ENST00000476777 ABCA5Q8WWZ7 1642 aa20.86■□□□□ 0.93
BRCA1-213ENST00000476777 ERCC6L2Q5T890 1561 aa20.82■□□□□ 0.92
BRCA1-213ENST00000476777 GRIN2AQ12879 1464 aa20.81■□□□□ 0.92
BRCA1-213ENST00000476777 NUP160Q12769 1436 aa20.78■□□□□ 0.92
BRCA1-213ENST00000476777 CEP170Q5SW79 1584 aa20.76■□□□□ 0.91
BRCA1-213ENST00000476777 ADAMTS12P58397 1594 aa20.73■□□□□ 0.91
BRCA1-213ENST00000476777 WRNQ14191 1432 aaPredicted RBP eCLIP20.72■□□□□ 0.91
BRCA1-213ENST00000476777 SHROOM2Q13796 1616 aa20.69■□□□□ 0.9
BRCA1-213ENST00000476777 FHAD1B1AJZ9 1412 aa20.69■□□□□ 0.9
BRCA1-213ENST00000476777 PHF23Q9BUL5 403 aaPredicted RBP20.68■□□□□ 0.9
BRCA1-213ENST00000476777 TOP2BQ02880 1626 aa20.61■□□□□ 0.89
BRCA1-213ENST00000476777 KIF13AQ9H1H9 1805 aa20.61■□□□□ 0.89
BRCA1-213ENST00000476777 ERICH3Q5RHP9 1530 aa20.6■□□□□ 0.89
BRCA1-213ENST00000476777 BIVM-ERCC5R4GMW8 1640 aa20.6■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms