RNA–Protein interactions for RNA: ENST00000475251.1

SKA3-206, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 397 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-206ENST00000475251 NISCHQ9Y2I1 1504 aa31.9■■■□□ 2.7
SKA3-206ENST00000475251 ABCC9O60706 1549 aa28.98■■■□□ 2.23
SKA3-206ENST00000475251 CCDC180Q9P1Z9 1646 aa28.8■■■□□ 2.2
SKA3-206ENST00000475251 AEBP2Q6ZN18 517 aaPredicted RBP27.55■■■□□ 2
SKA3-206ENST00000475251 RB1CC1Q8TDY2 1594 aa27.55■■■□□ 2
SKA3-206ENST00000475251 DNAJC5BQ9UF47 199 aa27.34■■□□□ 1.97
SKA3-206ENST00000475251 NACADO15069 1562 aa27.3■■□□□ 1.96
SKA3-206ENST00000475251 DCAF8L2P0C7V8 631 aa27.02■■□□□ 1.92
SKA3-206ENST00000475251 PABPN1Q86U42 306 aaKnown RBP eCLIP26.9■■□□□ 1.9
SKA3-206ENST00000475251 MYO15BQ96JP2 1530 aa26.85■■□□□ 1.89
SKA3-206ENST00000475251 UNC13AQ9UPW8 1703 aa26.84■■□□□ 1.89
SKA3-206ENST00000475251 BICRAQ9NZM4 1560 aa26.66■■□□□ 1.86
SKA3-206ENST00000475251 SHROOM4Q9ULL8 1493 aa26.42■■□□□ 1.82
SKA3-206ENST00000475251 DCAF1Q9Y4B6 1507 aa26.39■■□□□ 1.81
SKA3-206ENST00000475251 ZCCHC6Q5VYS8 1495 aaKnown RBP26.38■■□□□ 1.81
SKA3-206ENST00000475251 CHIC1Q5VXU3 224 aa26.33■■□□□ 1.81
SKA3-206ENST00000475251 CC2D2AQ9P2K1 1620 aa26.19■■□□□ 1.78
SKA3-206ENST00000475251 CECR2Q9BXF3 1484 aa26.17■■□□□ 1.78
SKA3-206ENST00000475251 SCRIBQ14160 1630 aa26.15■■□□□ 1.78
SKA3-206ENST00000475251 EIF4G1Q04637 1599 aaKnown RBP26.08■■□□□ 1.77
SKA3-206ENST00000475251 DNAJC5Q9H3Z4 198 aa25.41■■□□□ 1.66
SKA3-206ENST00000475251 CUX2O14529 1486 aa25.18■■□□□ 1.62
SKA3-206ENST00000475251 NCAPD3P42695 1498 aa25.17■■□□□ 1.62
SKA3-206ENST00000475251 ERCC6Q03468 1493 aa25.11■■□□□ 1.61
SKA3-206ENST00000475251 ATAD2BQ9ULI0 1458 aa25.03■■□□□ 1.6
SKA3-206ENST00000475251 SMARCA2P51531 1590 aa25.01■■□□□ 1.59
SKA3-206ENST00000475251 HMGXB3Q12766 1538 aa24.98■■□□□ 1.59
SKA3-206ENST00000475251 SMARCA4P51532 1647 aa24.94■■□□□ 1.58
SKA3-206ENST00000475251 BAZ1AQ9NRL2 1556 aaPredicted RBP24.83■■□□□ 1.57
SKA3-206ENST00000475251 BAZ1BQ9UIG0 1483 aaKnown RBP24.81■■□□□ 1.56
SKA3-206ENST00000475251 NESP48681 1621 aa24.79■■□□□ 1.56
SKA3-206ENST00000475251 PEG3Q9GZU2 1588 aa24.73■■□□□ 1.55
SKA3-206ENST00000475251 LAMC3Q9Y6N6 1575 aa24.68■■□□□ 1.54
SKA3-206ENST00000475251 THOC2Q8NI27 1593 aaKnown RBP24.64■■□□□ 1.54
SKA3-206ENST00000475251 PDS5BQ9NTI5 1447 aa24.56■■□□□ 1.52
SKA3-206ENST00000475251 MROH2BQ7Z745 1585 aa24.53■■□□□ 1.52
SKA3-206ENST00000475251 KIF21AQ7Z4S6 1674 aa24.5■■□□□ 1.51
SKA3-206ENST00000475251 CADPSQ9ULU8 1353 aa24.4■■□□□ 1.5
SKA3-206ENST00000475251 MRC2Q9UBG0 1479 aa24.33■■□□□ 1.49
SKA3-206ENST00000475251 WDR62O43379 1518 aa24.28■■□□□ 1.48
SKA3-206ENST00000475251 WIZO95785 1651 aa24.23■■□□□ 1.47
SKA3-206ENST00000475251 CEP164Q9UPV0 1460 aa24.19■■□□□ 1.46
SKA3-206ENST00000475251 TRIM41Q8WV44 630 aa24.16■■□□□ 1.46
SKA3-206ENST00000475251 FANCD2Q9BXW9 1451 aa24.11■■□□□ 1.45
SKA3-206ENST00000475251 CFTRP13569 1480 aa24.06■■□□□ 1.44
SKA3-206ENST00000475251 OSCARQ8IYS5 282 aa23.96■■□□□ 1.43
SKA3-206ENST00000475251 TOP2AP11388 1531 aaKnown RBP23.95■■□□□ 1.43
SKA3-206ENST00000475251 RSF1Q96T23 1441 aaPredicted RBP23.94■■□□□ 1.42
SKA3-206ENST00000475251 URB2Q14146 1524 aaKnown RBP23.89■■□□□ 1.41
SKA3-206ENST00000475251 PRDM2Q13029 1718 aa23.81■■□□□ 1.4
SKA3-206ENST00000475251 IFT140Q96RY7 1462 aa23.72■■□□□ 1.39
SKA3-206ENST00000475251 CCDC88BA6NC98 1476 aa23.65■■□□□ 1.38
SKA3-206ENST00000475251 RIMBP3CA6NJZ7 1639 aa23.63■■□□□ 1.37
SKA3-206ENST00000475251 RIMBP3BA6NNM3 1639 aa23.63■■□□□ 1.37
SKA3-206ENST00000475251 RIMBP3Q9UFD9 1639 aa23.63■■□□□ 1.37
SKA3-206ENST00000475251 ABCC8Q09428 1581 aa23.63■■□□□ 1.37
SKA3-206ENST00000475251 ZNF608Q9ULD9 1512 aaPredicted RBP23.62■■□□□ 1.37
SKA3-206ENST00000475251 TOPBP1Q92547 1522 aa23.61■■□□□ 1.37
SKA3-206ENST00000475251 ARHGEF11O15085 1522 aa23.54■■□□□ 1.36
SKA3-206ENST00000475251 EIF4G3O43432 1585 aaKnown RBP23.52■■□□□ 1.36
SKA3-206ENST00000475251 DNMBPQ6XZF7 1577 aa23.52■■□□□ 1.36
SKA3-206ENST00000475251 TARBP1Q13395 1621 aaKnown RBP23.41■■□□□ 1.34
SKA3-206ENST00000475251 CHD1O14646 1710 aa23.39■■□□□ 1.34
SKA3-206ENST00000475251 AQRO60306 1485 aaKnown RBP eCLIP23.39■■□□□ 1.343e-7■■■■■ 51.3
SKA3-206ENST00000475251 CYB5RLQ6IPT4 315 aa23.37■■□□□ 1.33
SKA3-206ENST00000475251 POLA1P09884 1462 aaPredicted RBP23.35■■□□□ 1.33
SKA3-206ENST00000475251 FBLN2P98095 1184 aa23.32■■□□□ 1.32
SKA3-206ENST00000475251 SENP3Q9H4L4 574 aaPredicted RBP23.27■■□□□ 1.32
SKA3-206ENST00000475251 ARAP1Q96P48 1450 aa23.27■■□□□ 1.32
SKA3-206ENST00000475251 WDR97A6NE52 1622 aa23.26■■□□□ 1.31
SKA3-206ENST00000475251 SOGA1O94964 1423 aa23.25■■□□□ 1.31
SKA3-206ENST00000475251 TRHP20396 242 aaPredicted RBP23.24■■□□□ 1.31
SKA3-206ENST00000475251 RAD54L2Q9Y4B4 1467 aa23.23■■□□□ 1.31
SKA3-206ENST00000475251 PHF23Q9BUL5 403 aaPredicted RBP23.21■■□□□ 1.31
SKA3-206ENST00000475251 TDRD9Q8NDG6 1382 aaKnown RBP23.2■■□□□ 1.3
SKA3-206ENST00000475251 SNAPC4Q5SXM2 1469 aa23.17■■□□□ 1.3
SKA3-206ENST00000475251 FGD5Q6ZNL6 1462 aa23.17■■□□□ 1.3
SKA3-206ENST00000475251 MAGI1Q96QZ7 1491 aaPredicted RBP23.15■■□□□ 1.3
SKA3-206ENST00000475251 SYNJ1O43426 1573 aa23.14■■□□□ 1.3
SKA3-206ENST00000475251 CHMP7Q8WUX9 453 aaPredicted RBP23.14■■□□□ 1.29
SKA3-206ENST00000475251 CLASP1Q7Z460 1538 aa23.13■■□□□ 1.29
SKA3-206ENST00000475251 GRIN2BQ13224 1484 aa23.11■■□□□ 1.29
SKA3-206ENST00000475251 CUX1P39880 1505 aa23.08■■□□□ 1.28
SKA3-206ENST00000475251 SYNJ2O15056 1496 aa23.06■■□□□ 1.28
SKA3-206ENST00000475251 GAPVD1Q14C86 1478 aa22.98■■□□□ 1.27
SKA3-206ENST00000475251 PBRM1Q86U86 1689 aa22.97■■□□□ 1.27
SKA3-206ENST00000475251 ABCA10Q8WWZ4 1543 aa22.92■■□□□ 1.26
SKA3-206ENST00000475251 ABCA5Q8WWZ7 1642 aa22.89■■□□□ 1.25
SKA3-206ENST00000475251 GRIN2AQ12879 1464 aa22.79■■□□□ 1.24
SKA3-206ENST00000475251 WRNQ14191 1432 aaPredicted RBP eCLIP22.79■■□□□ 1.24
SKA3-206ENST00000475251 ADAMTS12P58397 1594 aa22.74■■□□□ 1.23
SKA3-206ENST00000475251 NUP160Q12769 1436 aa22.73■■□□□ 1.23
SKA3-206ENST00000475251 CEP170Q5SW79 1584 aa22.7■■□□□ 1.22
SKA3-206ENST00000475251 FHAD1B1AJZ9 1412 aa22.69■■□□□ 1.22
SKA3-206ENST00000475251 TOP2BQ02880 1626 aa22.68■■□□□ 1.22
SKA3-206ENST00000475251 BIVM-ERCC5R4GMW8 1640 aa22.68■■□□□ 1.22
SKA3-206ENST00000475251 ERCC6L2Q5T890 1561 aa22.67■■□□□ 1.22
SKA3-206ENST00000475251 SUPT5HO00267 1087 aaKnown RBP22.66■■□□□ 1.22
SKA3-206ENST00000475251 SHROOM2Q13796 1616 aa22.65■■□□□ 1.22
SKA3-206ENST00000475251 ERICH3Q5RHP9 1530 aa22.64■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 95.4 ms