RNA–Protein interactions for RNA: ENST00000472224.1

CLRN1-205, Transcript of clarin 1, humanhuman

TSL 3

Gene CLRN1, Length 606 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1-205ENST00000472224 NISCHQ9Y2I1 1504 aa28.76■■■□□ 2.19
CLRN1-205ENST00000472224 AEBP2Q6ZN18 517 aaPredicted RBP26.71■■□□□ 1.87
CLRN1-205ENST00000472224 ABCC9O60706 1549 aa26.7■■□□□ 1.87
CLRN1-205ENST00000472224 CCDC180Q9P1Z9 1646 aa26.12■■□□□ 1.77
CLRN1-205ENST00000472224 CHIC1Q5VXU3 224 aa26.01■■□□□ 1.75
CLRN1-205ENST00000472224 DNAJC5BQ9UF47 199 aa25.65■■□□□ 1.7
CLRN1-205ENST00000472224 RB1CC1Q8TDY2 1594 aa25.13■■□□□ 1.61
CLRN1-205ENST00000472224 NACADO15069 1562 aa24.79■■□□□ 1.56
CLRN1-205ENST00000472224 PABPN1Q86U42 306 aaKnown RBP eCLIP24.71■■□□□ 1.55
CLRN1-205ENST00000472224 UNC13AQ9UPW8 1703 aa24.71■■□□□ 1.55
CLRN1-205ENST00000472224 BICRAQ9NZM4 1560 aa24.51■■□□□ 1.51
CLRN1-205ENST00000472224 DCAF8L2P0C7V8 631 aa24.39■■□□□ 1.49
CLRN1-205ENST00000472224 MYO15BQ96JP2 1530 aa24.22■■□□□ 1.47
CLRN1-205ENST00000472224 CC2D2AQ9P2K1 1620 aa24.13■■□□□ 1.45
CLRN1-205ENST00000472224 CECR2Q9BXF3 1484 aa24.11■■□□□ 1.45
CLRN1-205ENST00000472224 SHROOM4Q9ULL8 1493 aa24■■□□□ 1.43
CLRN1-205ENST00000472224 ZCCHC6Q5VYS8 1495 aaKnown RBP23.98■■□□□ 1.43
CLRN1-205ENST00000472224 DNAJC5Q9H3Z4 198 aa23.95■■□□□ 1.42
CLRN1-205ENST00000472224 EIF4G1Q04637 1599 aaKnown RBP23.91■■□□□ 1.42
CLRN1-205ENST00000472224 DCAF1Q9Y4B6 1507 aa23.75■■□□□ 1.39
CLRN1-205ENST00000472224 SCRIBQ14160 1630 aa23.75■■□□□ 1.39
CLRN1-205ENST00000472224 CUX2O14529 1486 aa23.25■■□□□ 1.31
CLRN1-205ENST00000472224 ERCC6Q03468 1493 aa23.05■■□□□ 1.28
CLRN1-205ENST00000472224 PHF23Q9BUL5 403 aaPredicted RBP22.99■■□□□ 1.27
CLRN1-205ENST00000472224 NCAPD3P42695 1498 aa22.88■■□□□ 1.25
CLRN1-205ENST00000472224 NESP48681 1621 aa22.79■■□□□ 1.24
CLRN1-205ENST00000472224 ATAD2BQ9ULI0 1458 aa22.73■■□□□ 1.23
CLRN1-205ENST00000472224 THOC2Q8NI27 1593 aaKnown RBP22.73■■□□□ 1.23
CLRN1-205ENST00000472224 HMGXB3Q12766 1538 aa22.69■■□□□ 1.22
CLRN1-205ENST00000472224 SMARCA2P51531 1590 aa22.62■■□□□ 1.21
CLRN1-205ENST00000472224 TRIM41Q8WV44 630 aa22.61■■□□□ 1.21
CLRN1-205ENST00000472224 SMARCA4P51532 1647 aa22.6■■□□□ 1.21
CLRN1-205ENST00000472224 KIF21AQ7Z4S6 1674 aa22.53■■□□□ 1.2
CLRN1-205ENST00000472224 SENP3Q9H4L4 574 aaPredicted RBP22.53■■□□□ 1.2
CLRN1-205ENST00000472224 LAMC3Q9Y6N6 1575 aa22.49■■□□□ 1.19
CLRN1-205ENST00000472224 BAZ1BQ9UIG0 1483 aaKnown RBP22.46■■□□□ 1.19
CLRN1-205ENST00000472224 PEG3Q9GZU2 1588 aa22.38■■□□□ 1.17
CLRN1-205ENST00000472224 BAZ1AQ9NRL2 1556 aaPredicted RBP22.33■■□□□ 1.16
CLRN1-205ENST00000472224 PDS5BQ9NTI5 1447 aa22.31■■□□□ 1.16
CLRN1-205ENST00000472224 WDR62O43379 1518 aa22.22■■□□□ 1.15
CLRN1-205ENST00000472224 MRC2Q9UBG0 1479 aa22.22■■□□□ 1.15
CLRN1-205ENST00000472224 MROH2BQ7Z745 1585 aa22.2■■□□□ 1.14
CLRN1-205ENST00000472224 CADPSQ9ULU8 1353 aa22.12■■□□□ 1.13
CLRN1-205ENST00000472224 WIZO95785 1651 aa22.01■■□□□ 1.11
CLRN1-205ENST00000472224 OSCARQ8IYS5 282 aa22■■□□□ 1.11
CLRN1-205ENST00000472224 CEP164Q9UPV0 1460 aa21.98■■□□□ 1.11
CLRN1-205ENST00000472224 RIMBP3CA6NJZ7 1639 aa21.95■■□□□ 1.1
CLRN1-205ENST00000472224 RIMBP3BA6NNM3 1639 aa21.95■■□□□ 1.1
CLRN1-205ENST00000472224 RIMBP3Q9UFD9 1639 aa21.95■■□□□ 1.1
CLRN1-205ENST00000472224 FANCD2Q9BXW9 1451 aa21.91■■□□□ 1.1
CLRN1-205ENST00000472224 RSF1Q96T23 1441 aaPredicted RBP21.89■■□□□ 1.1
CLRN1-205ENST00000472224 URB2Q14146 1524 aaKnown RBP21.82■■□□□ 1.08
CLRN1-205ENST00000472224 CFTRP13569 1480 aa21.77■■□□□ 1.08
CLRN1-205ENST00000472224 ARHGEF11O15085 1522 aa21.77■■□□□ 1.08
CLRN1-205ENST00000472224 TOP2AP11388 1531 aaKnown RBP21.74■■□□□ 1.07
CLRN1-205ENST00000472224 ZNF608Q9ULD9 1512 aaPredicted RBP21.66■■□□□ 1.06
CLRN1-205ENST00000472224 PRDM2Q13029 1718 aa21.61■■□□□ 1.05
CLRN1-205ENST00000472224 IFT140Q96RY7 1462 aa21.56■■□□□ 1.04
CLRN1-205ENST00000472224 CYB5RLQ6IPT4 315 aa21.55■■□□□ 1.04
CLRN1-205ENST00000472224 EIF4G3O43432 1585 aaKnown RBP21.53■■□□□ 1.04
CLRN1-205ENST00000472224 ARAP1Q96P48 1450 aa21.52■■□□□ 1.04
CLRN1-205ENST00000472224 CHD1O14646 1710 aa21.52■■□□□ 1.04
CLRN1-205ENST00000472224 TRHP20396 242 aaPredicted RBP21.49■■□□□ 1.03
CLRN1-205ENST00000472224 CCDC88BA6NC98 1476 aa21.45■■□□□ 1.02
CLRN1-205ENST00000472224 TOPBP1Q92547 1522 aa21.45■■□□□ 1.02
CLRN1-205ENST00000472224 SUPT5HO00267 1087 aaKnown RBP21.41■■□□□ 1.02
CLRN1-205ENST00000472224 TARBP1Q13395 1621 aaKnown RBP21.37■■□□□ 1.01
CLRN1-205ENST00000472224 AQRO60306 1485 aaKnown RBP eCLIP21.33■■□□□ 1.01
CLRN1-205ENST00000472224 DNMBPQ6XZF7 1577 aa21.31■■□□□ 1
CLRN1-205ENST00000472224 ABCC8Q09428 1581 aa21.27■■□□□ 1
CLRN1-205ENST00000472224 FBLN2P98095 1184 aa21.23■□□□□ 0.99
CLRN1-205ENST00000472224 CLASP1Q7Z460 1538 aa21.23■□□□□ 0.99
CLRN1-205ENST00000472224 POLA1P09884 1462 aaPredicted RBP21.18■□□□□ 0.98
CLRN1-205ENST00000472224 RAD54L2Q9Y4B4 1467 aa21.12■□□□□ 0.97
CLRN1-205ENST00000472224 SNAPC4Q5SXM2 1469 aa21.11■□□□□ 0.97
CLRN1-205ENST00000472224 SYNJ1O43426 1573 aa21.09■□□□□ 0.97
CLRN1-205ENST00000472224 TDRD9Q8NDG6 1382 aaKnown RBP21.08■□□□□ 0.96
CLRN1-205ENST00000472224 PLPPR3Q6T4P5 718 aa21.06■□□□□ 0.96
CLRN1-205ENST00000472224 WDR97A6NE52 1622 aa21.03■□□□□ 0.96
CLRN1-205ENST00000472224 SOGA1O94964 1423 aa21.01■□□□□ 0.95
CLRN1-205ENST00000472224 MAGI1Q96QZ7 1491 aaPredicted RBP21■□□□□ 0.95
CLRN1-205ENST00000472224 GAPVD1Q14C86 1478 aa20.98■□□□□ 0.95
CLRN1-205ENST00000472224 FOXD1Q16676 465 aa20.97■□□□□ 0.95
CLRN1-205ENST00000472224 CHMP7Q8WUX9 453 aaPredicted RBP20.96■□□□□ 0.95
CLRN1-205ENST00000472224 FGD5Q6ZNL6 1462 aa20.95■□□□□ 0.94
CLRN1-205ENST00000472224 SYNJ2O15056 1496 aa20.94■□□□□ 0.94
CLRN1-205ENST00000472224 GRIN2BQ13224 1484 aa20.92■□□□□ 0.94
CLRN1-205ENST00000472224 PBRM1Q86U86 1689 aa20.91■□□□□ 0.94
CLRN1-205ENST00000472224 ERCC6L2Q5T890 1561 aa20.88■□□□□ 0.93
CLRN1-205ENST00000472224 CUX1P39880 1505 aa20.87■□□□□ 0.93
CLRN1-205ENST00000472224 KIF13AQ9H1H9 1805 aa20.82■□□□□ 0.92
CLRN1-205ENST00000472224 ABCA5Q8WWZ7 1642 aa20.77■□□□□ 0.92
CLRN1-205ENST00000472224 CEP170Q5SW79 1584 aa20.73■□□□□ 0.91
CLRN1-205ENST00000472224 SHROOM2Q13796 1616 aa20.69■□□□□ 0.9
CLRN1-205ENST00000472224 WRNQ14191 1432 aaPredicted RBP eCLIP20.69■□□□□ 0.9
CLRN1-205ENST00000472224 GRIN2AQ12879 1464 aa20.69■□□□□ 0.9
CLRN1-205ENST00000472224 BIVM-ERCC5R4GMW8 1640 aa20.67■□□□□ 0.9
CLRN1-205ENST00000472224 ABCA10Q8WWZ4 1543 aa20.67■□□□□ 0.9
CLRN1-205ENST00000472224 TOP2BQ02880 1626 aa20.65■□□□□ 0.9
CLRN1-205ENST00000472224 ADAMTS12P58397 1594 aa20.64■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 64 ms