RNA–Protein interactions for RNA: ENST00000471259.1

MRPL40-203, Transcript of mitochondrial ribosomal protein L40, humanhuman

TSL 2

Gene MRPL40, Length 942 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MRPL40-203ENST00000471259 NISCHQ9Y2I1 1504 aa28.52■■■□□ 2.16
MRPL40-203ENST00000471259 ABCC9O60706 1549 aa25.97■■□□□ 1.75
MRPL40-203ENST00000471259 CCDC180Q9P1Z9 1646 aa25.77■■□□□ 1.72
MRPL40-203ENST00000471259 RB1CC1Q8TDY2 1594 aa24.7■■□□□ 1.54
MRPL40-203ENST00000471259 DNAJC5BQ9UF47 199 aa24.51■■□□□ 1.51
MRPL40-203ENST00000471259 NACADO15069 1562 aa24.46■■□□□ 1.51
MRPL40-203ENST00000471259 DCAF8L2P0C7V8 631 aa24.25■■□□□ 1.47
MRPL40-203ENST00000471259 PABPN1Q86U42 306 aaKnown RBP eCLIP24.11■■□□□ 1.45
MRPL40-203ENST00000471259 MYO15BQ96JP2 1530 aa24.05■■□□□ 1.44
MRPL40-203ENST00000471259 UNC13AQ9UPW8 1703 aa23.98■■□□□ 1.43
MRPL40-203ENST00000471259 AEBP2Q6ZN18 517 aaPredicted RBP23.88■■□□□ 1.41
MRPL40-203ENST00000471259 BICRAQ9NZM4 1560 aa23.82■■□□□ 1.4
MRPL40-203ENST00000471259 SHROOM4Q9ULL8 1493 aa23.71■■□□□ 1.39
MRPL40-203ENST00000471259 DCAF1Q9Y4B6 1507 aa23.6■■□□□ 1.37
MRPL40-203ENST00000471259 ZCCHC6Q5VYS8 1495 aaKnown RBP23.56■■□□□ 1.36
MRPL40-203ENST00000471259 CECR2Q9BXF3 1484 aa23.48■■□□□ 1.35
MRPL40-203ENST00000471259 CC2D2AQ9P2K1 1620 aa23.45■■□□□ 1.34
MRPL40-203ENST00000471259 SCRIBQ14160 1630 aa23.37■■□□□ 1.33
MRPL40-203ENST00000471259 CHIC1Q5VXU3 224 aa23.35■■□□□ 1.33
MRPL40-203ENST00000471259 EIF4G1Q04637 1599 aaKnown RBP23.35■■□□□ 1.33
MRPL40-203ENST00000471259 DNAJC5Q9H3Z4 198 aa22.89■■□□□ 1.25
MRPL40-203ENST00000471259 CUX2O14529 1486 aa22.62■■□□□ 1.21
MRPL40-203ENST00000471259 NCAPD3P42695 1498 aa22.55■■□□□ 1.2
MRPL40-203ENST00000471259 ERCC6Q03468 1493 aa22.55■■□□□ 1.2
MRPL40-203ENST00000471259 SMARCA2P51531 1590 aa22.41■■□□□ 1.18
MRPL40-203ENST00000471259 ATAD2BQ9ULI0 1458 aa22.41■■□□□ 1.18
MRPL40-203ENST00000471259 HMGXB3Q12766 1538 aa22.36■■□□□ 1.17
MRPL40-203ENST00000471259 SMARCA4P51532 1647 aa22.29■■□□□ 1.16
MRPL40-203ENST00000471259 BAZ1BQ9UIG0 1483 aaKnown RBP22.22■■□□□ 1.15
MRPL40-203ENST00000471259 BAZ1AQ9NRL2 1556 aaPredicted RBP22.22■■□□□ 1.15
MRPL40-203ENST00000471259 NESP48681 1621 aa22.16■■□□□ 1.14
MRPL40-203ENST00000471259 LAMC3Q9Y6N6 1575 aa22.12■■□□□ 1.13
MRPL40-203ENST00000471259 PEG3Q9GZU2 1588 aa22.11■■□□□ 1.13
MRPL40-203ENST00000471259 PDS5BQ9NTI5 1447 aa22.06■■□□□ 1.12
MRPL40-203ENST00000471259 THOC2Q8NI27 1593 aaKnown RBP22.04■■□□□ 1.12
MRPL40-203ENST00000471259 MROH2BQ7Z745 1585 aa21.91■■□□□ 1.1
MRPL40-203ENST00000471259 KIF21AQ7Z4S6 1674 aa21.9■■□□□ 1.1
MRPL40-203ENST00000471259 CADPSQ9ULU8 1353 aa21.87■■□□□ 1.09
MRPL40-203ENST00000471259 MRC2Q9UBG0 1479 aa21.8■■□□□ 1.08
MRPL40-203ENST00000471259 TRIM41Q8WV44 630 aa21.75■■□□□ 1.07
MRPL40-203ENST00000471259 WDR62O43379 1518 aa21.72■■□□□ 1.07
MRPL40-203ENST00000471259 CEP164Q9UPV0 1460 aa21.68■■□□□ 1.06
MRPL40-203ENST00000471259 WIZO95785 1651 aa21.62■■□□□ 1.05
MRPL40-203ENST00000471259 FANCD2Q9BXW9 1451 aa21.59■■□□□ 1.05
MRPL40-203ENST00000471259 OSCARQ8IYS5 282 aa21.56■■□□□ 1.04
MRPL40-203ENST00000471259 CFTRP13569 1480 aa21.52■■□□□ 1.04
MRPL40-203ENST00000471259 TOP2AP11388 1531 aaKnown RBP21.4■■□□□ 1.02
MRPL40-203ENST00000471259 RSF1Q96T23 1441 aaPredicted RBP21.38■■□□□ 1.01
MRPL40-203ENST00000471259 URB2Q14146 1524 aaKnown RBP21.36■■□□□ 1.01
MRPL40-203ENST00000471259 PRDM2Q13029 1718 aa21.29■■□□□ 1
MRPL40-203ENST00000471259 IFT140Q96RY7 1462 aa21.26■□□□□ 0.99
MRPL40-203ENST00000471259 ABCC8Q09428 1581 aa21.22■□□□□ 0.99
MRPL40-203ENST00000471259 RIMBP3CA6NJZ7 1639 aa21.18■□□□□ 0.98
MRPL40-203ENST00000471259 RIMBP3BA6NNM3 1639 aa21.18■□□□□ 0.98
MRPL40-203ENST00000471259 RIMBP3Q9UFD9 1639 aa21.18■□□□□ 0.98
MRPL40-203ENST00000471259 CCDC88BA6NC98 1476 aa21.13■□□□□ 0.97
MRPL40-203ENST00000471259 TOPBP1Q92547 1522 aa21.13■□□□□ 0.97
MRPL40-203ENST00000471259 ZNF608Q9ULD9 1512 aaPredicted RBP21.13■□□□□ 0.97
MRPL40-203ENST00000471259 ARHGEF11O15085 1522 aa21.11■□□□□ 0.97
MRPL40-203ENST00000471259 DNMBPQ6XZF7 1577 aa21.06■□□□□ 0.96
MRPL40-203ENST00000471259 EIF4G3O43432 1585 aaKnown RBP21.04■□□□□ 0.96
MRPL40-203ENST00000471259 CYB5RLQ6IPT4 315 aa21.01■□□□□ 0.95
MRPL40-203ENST00000471259 FBLN2P98095 1184 aa20.96■□□□□ 0.95
MRPL40-203ENST00000471259 TRHP20396 242 aaPredicted RBP20.94■□□□□ 0.94
MRPL40-203ENST00000471259 AQRO60306 1485 aaKnown RBP eCLIP20.94■□□□□ 0.94
MRPL40-203ENST00000471259 TARBP1Q13395 1621 aaKnown RBP20.93■□□□□ 0.94
MRPL40-203ENST00000471259 CHD1O14646 1710 aa20.92■□□□□ 0.94
MRPL40-203ENST00000471259 POLA1P09884 1462 aaPredicted RBP20.88■□□□□ 0.93
MRPL40-203ENST00000471259 ARAP1Q96P48 1450 aa20.85■□□□□ 0.93
MRPL40-203ENST00000471259 WDR97A6NE52 1622 aa20.85■□□□□ 0.93
MRPL40-203ENST00000471259 SOGA1O94964 1423 aa20.84■□□□□ 0.93
MRPL40-203ENST00000471259 CHMP7Q8WUX9 453 aaPredicted RBP20.79■□□□□ 0.92
MRPL40-203ENST00000471259 TDRD9Q8NDG6 1382 aaKnown RBP20.78■□□□□ 0.92
MRPL40-203ENST00000471259 SYNJ1O43426 1573 aa20.76■□□□□ 0.91
MRPL40-203ENST00000471259 RAD54L2Q9Y4B4 1467 aa20.76■□□□□ 0.91
MRPL40-203ENST00000471259 MAGI1Q96QZ7 1491 aaPredicted RBP20.75■□□□□ 0.91
MRPL40-203ENST00000471259 SNAPC4Q5SXM2 1469 aa20.74■□□□□ 0.91
MRPL40-203ENST00000471259 GRIN2BQ13224 1484 aa20.71■□□□□ 0.91
MRPL40-203ENST00000471259 FGD5Q6ZNL6 1462 aa20.71■□□□□ 0.91
MRPL40-203ENST00000471259 CLASP1Q7Z460 1538 aa20.69■□□□□ 0.9
MRPL40-203ENST00000471259 SYNJ2O15056 1496 aa20.66■□□□□ 0.9
MRPL40-203ENST00000471259 CUX1P39880 1505 aa20.6■□□□□ 0.89
MRPL40-203ENST00000471259 GAPVD1Q14C86 1478 aa20.57■□□□□ 0.88
MRPL40-203ENST00000471259 PBRM1Q86U86 1689 aa20.54■□□□□ 0.88
MRPL40-203ENST00000471259 ABCA10Q8WWZ4 1543 aa20.5■□□□□ 0.87
MRPL40-203ENST00000471259 PHF23Q9BUL5 403 aaPredicted RBP20.46■□□□□ 0.87
MRPL40-203ENST00000471259 ABCA5Q8WWZ7 1642 aa20.44■□□□□ 0.86
MRPL40-203ENST00000471259 SENP3Q9H4L4 574 aaPredicted RBP20.41■□□□□ 0.86
MRPL40-203ENST00000471259 WRNQ14191 1432 aaPredicted RBP eCLIP20.41■□□□□ 0.86
MRPL40-203ENST00000471259 GRIN2AQ12879 1464 aa20.4■□□□□ 0.86
MRPL40-203ENST00000471259 NUP160Q12769 1436 aa20.34■□□□□ 0.85
MRPL40-203ENST00000471259 FHAD1B1AJZ9 1412 aa20.33■□□□□ 0.84
MRPL40-203ENST00000471259 ADAMTS12P58397 1594 aa20.32■□□□□ 0.84
MRPL40-203ENST00000471259 CEP170Q5SW79 1584 aa20.31■□□□□ 0.84
MRPL40-203ENST00000471259 ERICH3Q5RHP9 1530 aa20.27■□□□□ 0.83
MRPL40-203ENST00000471259 TOP2BQ02880 1626 aa20.26■□□□□ 0.83
MRPL40-203ENST00000471259 SHROOM2Q13796 1616 aa20.25■□□□□ 0.83
MRPL40-203ENST00000471259 BIVM-ERCC5R4GMW8 1640 aa20.25■□□□□ 0.83
MRPL40-203ENST00000471259 SUPT5HO00267 1087 aaKnown RBP20.25■□□□□ 0.83
MRPL40-203ENST00000471259 ERCC6L2Q5T890 1561 aa20.25■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 70 ms