RNA–Protein interactions for RNA: ENST00000471218.5

PTPRE-207, Transcript of protein tyrosine phosphatase, receptor type E, humanhuman

TSL 3 BASIC

Gene PTPRE, Length 522 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRE-207ENST00000471218 NISCHQ9Y2I1 1504 aa21.31■■□□□ 1
PTPRE-207ENST00000471218 ABCC9O60706 1549 aa19.3■□□□□ 0.68
PTPRE-207ENST00000471218 CCDC180Q9P1Z9 1646 aa19.19■□□□□ 0.66
PTPRE-207ENST00000471218 RB1CC1Q8TDY2 1594 aa18.4■□□□□ 0.54
PTPRE-207ENST00000471218 NACADO15069 1562 aa18.25■□□□□ 0.51
PTPRE-207ENST00000471218 DNAJC5BQ9UF47 199 aa18.23■□□□□ 0.51
PTPRE-207ENST00000471218 DCAF8L2P0C7V8 631 aa18.14■□□□□ 0.49
PTPRE-207ENST00000471218 MYO15BQ96JP2 1530 aa18■□□□□ 0.47
PTPRE-207ENST00000471218 PABPN1Q86U42 306 aaKnown RBP eCLIP17.98■□□□□ 0.47
PTPRE-207ENST00000471218 UNC13AQ9UPW8 1703 aa17.78■□□□□ 0.44
PTPRE-207ENST00000471218 BICRAQ9NZM4 1560 aa17.72■□□□□ 0.43
PTPRE-207ENST00000471218 SHROOM4Q9ULL8 1493 aa17.71■□□□□ 0.43
PTPRE-207ENST00000471218 DCAF1Q9Y4B6 1507 aa17.67■□□□□ 0.42
PTPRE-207ENST00000471218 ZCCHC6Q5VYS8 1495 aaKnown RBP17.6■□□□□ 0.41
PTPRE-207ENST00000471218 CECR2Q9BXF3 1484 aa17.47■□□□□ 0.39
PTPRE-207ENST00000471218 CC2D2AQ9P2K1 1620 aa17.43■□□□□ 0.38
PTPRE-207ENST00000471218 EIF4G1Q04637 1599 aaKnown RBP17.38■□□□□ 0.37
PTPRE-207ENST00000471218 SCRIBQ14160 1630 aa17.38■□□□□ 0.37
PTPRE-207ENST00000471218 DNAJC5Q9H3Z4 198 aa17.03■□□□□ 0.32
PTPRE-207ENST00000471218 NCAPD3P42695 1498 aa16.86■□□□□ 0.29
PTPRE-207ENST00000471218 CUX2O14529 1486 aa16.84■□□□□ 0.29
PTPRE-207ENST00000471218 ERCC6Q03468 1493 aa16.79■□□□□ 0.28
PTPRE-207ENST00000471218 SMARCA2P51531 1590 aa16.73■□□□□ 0.27
PTPRE-207ENST00000471218 ATAD2BQ9ULI0 1458 aa16.73■□□□□ 0.27
PTPRE-207ENST00000471218 HMGXB3Q12766 1538 aa16.68■□□□□ 0.26
PTPRE-207ENST00000471218 SMARCA4P51532 1647 aa16.61■□□□□ 0.25
PTPRE-207ENST00000471218 BAZ1AQ9NRL2 1556 aaPredicted RBP16.6■□□□□ 0.25
PTPRE-207ENST00000471218 BAZ1BQ9UIG0 1483 aaKnown RBP16.58■□□□□ 0.24
PTPRE-207ENST00000471218 PEG3Q9GZU2 1588 aa16.51■□□□□ 0.23
PTPRE-207ENST00000471218 LAMC3Q9Y6N6 1575 aa16.49■□□□□ 0.23
PTPRE-207ENST00000471218 NESP48681 1621 aa16.48■□□□□ 0.23
PTPRE-207ENST00000471218 PDS5BQ9NTI5 1447 aa16.48■□□□□ 0.23
PTPRE-207ENST00000471218 CADPSQ9ULU8 1353 aa16.36■□□□□ 0.21
PTPRE-207ENST00000471218 THOC2Q8NI27 1593 aaKnown RBP16.35■□□□□ 0.21
PTPRE-207ENST00000471218 MROH2BQ7Z745 1585 aa16.34■□□□□ 0.21
PTPRE-207ENST00000471218 MRC2Q9UBG0 1479 aa16.25■□□□□ 0.19
PTPRE-207ENST00000471218 KIF21AQ7Z4S6 1674 aa16.24■□□□□ 0.19
PTPRE-207ENST00000471218 WDR62O43379 1518 aa16.18■□□□□ 0.18
PTPRE-207ENST00000471218 CEP164Q9UPV0 1460 aa16.16■□□□□ 0.18
PTPRE-207ENST00000471218 TRIM41Q8WV44 630 aa16.15■□□□□ 0.18
PTPRE-207ENST00000471218 OSCARQ8IYS5 282 aa16.12■□□□□ 0.17
PTPRE-207ENST00000471218 FANCD2Q9BXW9 1451 aa16.11■□□□□ 0.17
PTPRE-207ENST00000471218 WIZO95785 1651 aa16.11■□□□□ 0.17
PTPRE-207ENST00000471218 RSF1Q96T23 1441 aaPredicted RBP16.11■□□□□ 0.17
PTPRE-207ENST00000471218 CFTRP13569 1480 aa16.1■□□□□ 0.17
PTPRE-207ENST00000471218 SUPT5HO00267 1087 aaKnown RBP16.01■□□□□ 0.15
PTPRE-207ENST00000471218 TOP2AP11388 1531 aaKnown RBP15.98■□□□□ 0.15
PTPRE-207ENST00000471218 URB2Q14146 1524 aaKnown RBP15.91■□□□□ 0.14
PTPRE-207ENST00000471218 ABCC8Q09428 1581 aa15.88■□□□□ 0.13
PTPRE-207ENST00000471218 IFT140Q96RY7 1462 aa15.88■□□□□ 0.13
PTPRE-207ENST00000471218 PRDM2Q13029 1718 aa15.81■□□□□ 0.12
PTPRE-207ENST00000471218 CCDC88BA6NC98 1476 aa15.8■□□□□ 0.12
PTPRE-207ENST00000471218 TOPBP1Q92547 1522 aa15.75■□□□□ 0.11
PTPRE-207ENST00000471218 ZNF608Q9ULD9 1512 aaPredicted RBP15.73■□□□□ 0.11
PTPRE-207ENST00000471218 RIMBP3CA6NJZ7 1639 aa15.71■□□□□ 0.11
PTPRE-207ENST00000471218 RIMBP3BA6NNM3 1639 aa15.71■□□□□ 0.11
PTPRE-207ENST00000471218 RIMBP3Q9UFD9 1639 aa15.71■□□□□ 0.11
PTPRE-207ENST00000471218 ARHGEF11O15085 1522 aa15.69■□□□□ 0.1
PTPRE-207ENST00000471218 DNMBPQ6XZF7 1577 aa15.69■□□□□ 0.1
PTPRE-207ENST00000471218 CYB5RLQ6IPT4 315 aa15.68■□□□□ 0.1
PTPRE-207ENST00000471218 FBLN2P98095 1184 aa15.65■□□□□ 0.1
PTPRE-207ENST00000471218 EIF4G3O43432 1585 aaKnown RBP15.63■□□□□ 0.09
PTPRE-207ENST00000471218 AQRO60306 1485 aaKnown RBP eCLIP15.62■□□□□ 0.09
PTPRE-207ENST00000471218 TRHP20396 242 aaPredicted RBP15.59■□□□□ 0.09
PTPRE-207ENST00000471218 SOGA1O94964 1423 aa15.59■□□□□ 0.09
PTPRE-207ENST00000471218 TARBP1Q13395 1621 aaKnown RBP15.58■□□□□ 0.09
PTPRE-207ENST00000471218 POLA1P09884 1462 aaPredicted RBP15.58■□□□□ 0.08
PTPRE-207ENST00000471218 CHMP7Q8WUX9 453 aaPredicted RBP15.56■□□□□ 0.08
PTPRE-207ENST00000471218 WDR97A6NE52 1622 aa15.56■□□□□ 0.08
PTPRE-207ENST00000471218 TDRD9Q8NDG6 1382 aaKnown RBP15.52■□□□□ 0.08
PTPRE-207ENST00000471218 CHD1O14646 1710 aa15.51■□□□□ 0.07
PTPRE-207ENST00000471218 ARAP1Q96P48 1450 aa15.49■□□□□ 0.07
PTPRE-207ENST00000471218 MAGI1Q96QZ7 1491 aaPredicted RBP15.49■□□□□ 0.07
PTPRE-207ENST00000471218 RAD54L2Q9Y4B4 1467 aa15.48■□□□□ 0.07
PTPRE-207ENST00000471218 GRIN2BQ13224 1484 aa15.46■□□□□ 0.07
PTPRE-207ENST00000471218 SYNJ1O43426 1573 aa15.46■□□□□ 0.07
PTPRE-207ENST00000471218 SNAPC4Q5SXM2 1469 aa15.45■□□□□ 0.06
PTPRE-207ENST00000471218 FGD5Q6ZNL6 1462 aa15.45■□□□□ 0.06
PTPRE-207ENST00000471218 SYNJ2O15056 1496 aa15.42■□□□□ 0.06
PTPRE-207ENST00000471218 CHIC1Q5VXU3 224 aa15.42■□□□□ 0.06
PTPRE-207ENST00000471218 CLASP1Q7Z460 1538 aa15.39■□□□□ 0.05
PTPRE-207ENST00000471218 GAPVD1Q14C86 1478 aa15.38■□□□□ 0.05
PTPRE-207ENST00000471218 CUX1P39880 1505 aa15.38■□□□□ 0.05
PTPRE-207ENST00000471218 AEBP2Q6ZN18 517 aaPredicted RBP15.33■□□□□ 0.04
PTPRE-207ENST00000471218 ABCA10Q8WWZ4 1543 aa15.32■□□□□ 0.04
PTPRE-207ENST00000471218 WRNQ14191 1432 aaPredicted RBP eCLIP15.3■□□□□ 0.04
PTPRE-207ENST00000471218 PBRM1Q86U86 1689 aa15.25■□□□□ 0.03
PTPRE-207ENST00000471218 GRIN2AQ12879 1464 aa15.22■□□□□ 0.03
PTPRE-207ENST00000471218 ABCA5Q8WWZ7 1642 aa15.22■□□□□ 0.03
PTPRE-207ENST00000471218 FHAD1B1AJZ9 1412 aa15.2■□□□□ 0.02
PTPRE-207ENST00000471218 NUP160Q12769 1436 aa15.18■□□□□ 0.02
PTPRE-207ENST00000471218 ERICH3Q5RHP9 1530 aa15.15■□□□□ 0.02
PTPRE-207ENST00000471218 NPM1P06748 294 aaKnown RBP eCLIP15.13■□□□□ 0.01
PTPRE-207ENST00000471218 JPH4Q96JJ6 628 aa15.13■□□□□ 0.01
PTPRE-207ENST00000471218 TOP2BQ02880 1626 aa15.13■□□□□ 0.01
PTPRE-207ENST00000471218 ADAMTS12P58397 1594 aa15.12■□□□□ 0.01
PTPRE-207ENST00000471218 CEP170Q5SW79 1584 aa15.12■□□□□ 0.01
PTPRE-207ENST00000471218 EEA1Q15075 1411 aa15.1■□□□□ 0.01
PTPRE-207ENST00000471218 BIVM-ERCC5R4GMW8 1640 aa15.1■□□□□ 0.01
PTPRE-207ENST00000471218 SHROOM2Q13796 1616 aa15.07■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms