RNA–Protein interactions for RNA: ENST00000470232.1

SYNGAP1-205, Transcript of synaptic Ras GTPase activating protein 1, humanhuman

TSL 3

Gene SYNGAP1, Length 394 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNGAP1-205ENST00000470232 NISCHQ9Y2I1 1504 aa22.6■■□□□ 1.21
SYNGAP1-205ENST00000470232 ABCC9O60706 1549 aa20.89■□□□□ 0.94
SYNGAP1-205ENST00000470232 CCDC180Q9P1Z9 1646 aa20.45■□□□□ 0.87
SYNGAP1-205ENST00000470232 AEBP2Q6ZN18 517 aaPredicted RBP20.21■□□□□ 0.83
SYNGAP1-205ENST00000470232 DNAJC5BQ9UF47 199 aa19.99■□□□□ 0.79
SYNGAP1-205ENST00000470232 RB1CC1Q8TDY2 1594 aa19.74■□□□□ 0.75
SYNGAP1-205ENST00000470232 NACADO15069 1562 aa19.49■□□□□ 0.71
SYNGAP1-205ENST00000470232 CHIC1Q5VXU3 224 aa19.45■□□□□ 0.7
SYNGAP1-205ENST00000470232 PABPN1Q86U42 306 aaKnown RBP eCLIP19.43■□□□□ 0.7
SYNGAP1-205ENST00000470232 DCAF8L2P0C7V8 631 aa19.41■□□□□ 0.7
SYNGAP1-205ENST00000470232 UNC13AQ9UPW8 1703 aa19.18■□□□□ 0.66
SYNGAP1-205ENST00000470232 BICRAQ9NZM4 1560 aa19.08■□□□□ 0.65
SYNGAP1-205ENST00000470232 MYO15BQ96JP2 1530 aa19.08■□□□□ 0.64
SYNGAP1-205ENST00000470232 CECR2Q9BXF3 1484 aa18.9■□□□□ 0.62
SYNGAP1-205ENST00000470232 SHROOM4Q9ULL8 1493 aa18.89■□□□□ 0.61
SYNGAP1-205ENST00000470232 CC2D2AQ9P2K1 1620 aa18.85■□□□□ 0.61
SYNGAP1-205ENST00000470232 DNAJC5Q9H3Z4 198 aa18.78■□□□□ 0.6
SYNGAP1-205ENST00000470232 EIF4G1Q04637 1599 aaKnown RBP18.69■□□□□ 0.58
SYNGAP1-205ENST00000470232 DCAF1Q9Y4B6 1507 aa18.65■□□□□ 0.58
SYNGAP1-205ENST00000470232 ZCCHC6Q5VYS8 1495 aaKnown RBP18.59■□□□□ 0.57
SYNGAP1-205ENST00000470232 SCRIBQ14160 1630 aa18.59■□□□□ 0.57
SYNGAP1-205ENST00000470232 CUX2O14529 1486 aa18.25■□□□□ 0.51
SYNGAP1-205ENST00000470232 ERCC6Q03468 1493 aa18.14■□□□□ 0.5
SYNGAP1-205ENST00000470232 NCAPD3P42695 1498 aa18■□□□□ 0.47
SYNGAP1-205ENST00000470232 ATAD2BQ9ULI0 1458 aa17.86■□□□□ 0.45
SYNGAP1-205ENST00000470232 SMARCA2P51531 1590 aa17.82■□□□□ 0.44
SYNGAP1-205ENST00000470232 HMGXB3Q12766 1538 aa17.79■□□□□ 0.44
SYNGAP1-205ENST00000470232 NESP48681 1621 aa17.79■□□□□ 0.44
SYNGAP1-205ENST00000470232 TRIM41Q8WV44 630 aa17.77■□□□□ 0.44
SYNGAP1-205ENST00000470232 SMARCA4P51532 1647 aa17.7■□□□□ 0.42
SYNGAP1-205ENST00000470232 BAZ1BQ9UIG0 1483 aaKnown RBP17.69■□□□□ 0.42
SYNGAP1-205ENST00000470232 THOC2Q8NI27 1593 aaKnown RBP17.68■□□□□ 0.42
SYNGAP1-205ENST00000470232 LAMC3Q9Y6N6 1575 aa17.66■□□□□ 0.42
SYNGAP1-205ENST00000470232 PDS5BQ9NTI5 1447 aa17.64■□□□□ 0.41
SYNGAP1-205ENST00000470232 BAZ1AQ9NRL2 1556 aaPredicted RBP17.59■□□□□ 0.41
SYNGAP1-205ENST00000470232 KIF21AQ7Z4S6 1674 aa17.54■□□□□ 0.4
SYNGAP1-205ENST00000470232 PEG3Q9GZU2 1588 aa17.53■□□□□ 0.4
SYNGAP1-205ENST00000470232 CADPSQ9ULU8 1353 aa17.45■□□□□ 0.38
SYNGAP1-205ENST00000470232 MRC2Q9UBG0 1479 aa17.44■□□□□ 0.38
SYNGAP1-205ENST00000470232 OSCARQ8IYS5 282 aa17.43■□□□□ 0.38
SYNGAP1-205ENST00000470232 WDR62O43379 1518 aa17.37■□□□□ 0.37
SYNGAP1-205ENST00000470232 MROH2BQ7Z745 1585 aa17.36■□□□□ 0.37
SYNGAP1-205ENST00000470232 CEP164Q9UPV0 1460 aa17.3■□□□□ 0.36
SYNGAP1-205ENST00000470232 SENP3Q9H4L4 574 aaPredicted RBP17.27■□□□□ 0.36
SYNGAP1-205ENST00000470232 FANCD2Q9BXW9 1451 aa17.23■□□□□ 0.35
SYNGAP1-205ENST00000470232 WIZO95785 1651 aa17.13■□□□□ 0.33
SYNGAP1-205ENST00000470232 CFTRP13569 1480 aa17.12■□□□□ 0.33
SYNGAP1-205ENST00000470232 RIMBP3CA6NJZ7 1639 aa17.1■□□□□ 0.33
SYNGAP1-205ENST00000470232 RIMBP3BA6NNM3 1639 aa17.1■□□□□ 0.33
SYNGAP1-205ENST00000470232 RIMBP3Q9UFD9 1639 aa17.1■□□□□ 0.33
SYNGAP1-205ENST00000470232 URB2Q14146 1524 aaKnown RBP17.06■□□□□ 0.32
SYNGAP1-205ENST00000470232 PHF23Q9BUL5 403 aaPredicted RBP17.05■□□□□ 0.32
SYNGAP1-205ENST00000470232 CYB5RLQ6IPT4 315 aa17.02■□□□□ 0.32
SYNGAP1-205ENST00000470232 ARHGEF11O15085 1522 aa17.01■□□□□ 0.31
SYNGAP1-205ENST00000470232 TRHP20396 242 aaPredicted RBP17.01■□□□□ 0.31
SYNGAP1-205ENST00000470232 IFT140Q96RY7 1462 aa16.99■□□□□ 0.31
SYNGAP1-205ENST00000470232 ZNF608Q9ULD9 1512 aaPredicted RBP16.92■□□□□ 0.3
SYNGAP1-205ENST00000470232 TOP2AP11388 1531 aaKnown RBP16.91■□□□□ 0.3
SYNGAP1-205ENST00000470232 RSF1Q96T23 1441 aaPredicted RBP16.88■□□□□ 0.29
SYNGAP1-205ENST00000470232 PRDM2Q13029 1718 aa16.87■□□□□ 0.29
SYNGAP1-205ENST00000470232 ABCC8Q09428 1581 aa16.86■□□□□ 0.29
SYNGAP1-205ENST00000470232 FBLN2P98095 1184 aa16.84■□□□□ 0.29
SYNGAP1-205ENST00000470232 TOPBP1Q92547 1522 aa16.83■□□□□ 0.28
SYNGAP1-205ENST00000470232 EIF4G3O43432 1585 aaKnown RBP16.8■□□□□ 0.28
SYNGAP1-205ENST00000470232 ARAP1Q96P48 1450 aa16.8■□□□□ 0.28
SYNGAP1-205ENST00000470232 CHD1O14646 1710 aa16.76■□□□□ 0.27
SYNGAP1-205ENST00000470232 AQRO60306 1485 aaKnown RBP eCLIP16.76■□□□□ 0.272e-6■■■■■ 26.9
SYNGAP1-205ENST00000470232 CCDC88BA6NC98 1476 aa16.75■□□□□ 0.27
SYNGAP1-205ENST00000470232 DNMBPQ6XZF7 1577 aa16.73■□□□□ 0.27
SYNGAP1-205ENST00000470232 TARBP1Q13395 1621 aaKnown RBP16.68■□□□□ 0.26
SYNGAP1-205ENST00000470232 CHMP7Q8WUX9 453 aaPredicted RBP16.66■□□□□ 0.26
SYNGAP1-205ENST00000470232 POLA1P09884 1462 aaPredicted RBP16.62■□□□□ 0.25
SYNGAP1-205ENST00000470232 SOGA1O94964 1423 aa16.61■□□□□ 0.25
SYNGAP1-205ENST00000470232 TDRD9Q8NDG6 1382 aaKnown RBP16.6■□□□□ 0.25
SYNGAP1-205ENST00000470232 SYNJ1O43426 1573 aa16.59■□□□□ 0.25
SYNGAP1-205ENST00000470232 RAD54L2Q9Y4B4 1467 aa16.57■□□□□ 0.24
SYNGAP1-205ENST00000470232 CLASP1Q7Z460 1538 aa16.56■□□□□ 0.24
SYNGAP1-205ENST00000470232 SNAPC4Q5SXM2 1469 aa16.56■□□□□ 0.24
SYNGAP1-205ENST00000470232 WDR97A6NE52 1622 aa16.56■□□□□ 0.24
SYNGAP1-205ENST00000470232 MAGI1Q96QZ7 1491 aaPredicted RBP16.54■□□□□ 0.24
SYNGAP1-205ENST00000470232 GRIN2BQ13224 1484 aa16.5■□□□□ 0.23
SYNGAP1-205ENST00000470232 SYNJ2O15056 1496 aa16.48■□□□□ 0.23
SYNGAP1-205ENST00000470232 GAPVD1Q14C86 1478 aa16.48■□□□□ 0.23
SYNGAP1-205ENST00000470232 FGD5Q6ZNL6 1462 aa16.46■□□□□ 0.23
SYNGAP1-205ENST00000470232 CUX1P39880 1505 aa16.35■□□□□ 0.21
SYNGAP1-205ENST00000470232 PBRM1Q86U86 1689 aa16.33■□□□□ 0.2
SYNGAP1-205ENST00000470232 ABCA10Q8WWZ4 1543 aa16.26■□□□□ 0.19
SYNGAP1-205ENST00000470232 GRIN2AQ12879 1464 aa16.25■□□□□ 0.19
SYNGAP1-205ENST00000470232 ERCC6L2Q5T890 1561 aa16.23■□□□□ 0.19
SYNGAP1-205ENST00000470232 ABCA5Q8WWZ7 1642 aa16.23■□□□□ 0.19
SYNGAP1-205ENST00000470232 CEP170Q5SW79 1584 aa16.22■□□□□ 0.19
SYNGAP1-205ENST00000470232 NPM1P06748 294 aaKnown RBP eCLIP16.22■□□□□ 0.19
SYNGAP1-205ENST00000470232 NUP160Q12769 1436 aa16.2■□□□□ 0.18
SYNGAP1-205ENST00000470232 FAM69CQ0P6D2 419 aa16.19■□□□□ 0.18
SYNGAP1-205ENST00000470232 KIF13AQ9H1H9 1805 aa16.18■□□□□ 0.18
SYNGAP1-205ENST00000470232 FHAD1B1AJZ9 1412 aa16.17■□□□□ 0.18
SYNGAP1-205ENST00000470232 WRNQ14191 1432 aaPredicted RBP eCLIP16.16■□□□□ 0.18
SYNGAP1-205ENST00000470232 SHROOM2Q13796 1616 aa16.15■□□□□ 0.18
SYNGAP1-205ENST00000470232 ADAMTS12P58397 1594 aa16.14■□□□□ 0.17
SYNGAP1-205ENST00000470232 JPH4Q96JJ6 628 aa16.14■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 61.2 ms