RNA–Protein interactions for RNA: ENST00000469504.1

COL4A3-204, Transcript of collagen type IV alpha 3 chain, humanhuman

TSL 1 (best)

Gene COL4A3, Length 521 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3-204ENST00000469504 NISCHQ9Y2I1 1504 aa27.32■■□□□ 1.96
COL4A3-204ENST00000469504 CCDC180Q9P1Z9 1646 aa24.5■■□□□ 1.51
COL4A3-204ENST00000469504 ABCC9O60706 1549 aa24.29■■□□□ 1.48
COL4A3-204ENST00000469504 AEBP2Q6ZN18 517 aaPredicted RBP23.68■■□□□ 1.38
COL4A3-204ENST00000469504 RB1CC1Q8TDY2 1594 aa23.27■■□□□ 1.32
COL4A3-204ENST00000469504 NACADO15069 1562 aa23.17■■□□□ 1.3
COL4A3-204ENST00000469504 MYO15BQ96JP2 1530 aa22.95■■□□□ 1.26
COL4A3-204ENST00000469504 DCAF8L2P0C7V8 631 aa22.91■■□□□ 1.26
COL4A3-204ENST00000469504 ZCCHC6Q5VYS8 1495 aaKnown RBP22.67■■□□□ 1.22
COL4A3-204ENST00000469504 DCAF1Q9Y4B6 1507 aa22.67■■□□□ 1.22
COL4A3-204ENST00000469504 DNAJC5BQ9UF47 199 aa22.65■■□□□ 1.22
COL4A3-204ENST00000469504 CHIC1Q5VXU3 224 aa22.6■■□□□ 1.21
COL4A3-204ENST00000469504 PABPN1Q86U42 306 aaKnown RBP eCLIP22.6■■□□□ 1.21
COL4A3-204ENST00000469504 UNC13AQ9UPW8 1703 aa22.59■■□□□ 1.21
COL4A3-204ENST00000469504 BICRAQ9NZM4 1560 aa22.5■■□□□ 1.19
COL4A3-204ENST00000469504 SHROOM4Q9ULL8 1493 aa22.42■■□□□ 1.18
COL4A3-204ENST00000469504 SCRIBQ14160 1630 aa22.21■■□□□ 1.15
COL4A3-204ENST00000469504 EIF4G1Q04637 1599 aaKnown RBP21.99■■□□□ 1.11
COL4A3-204ENST00000469504 CC2D2AQ9P2K1 1620 aa21.97■■□□□ 1.11
COL4A3-204ENST00000469504 CECR2Q9BXF3 1484 aa21.93■■□□□ 1.1
COL4A3-204ENST00000469504 NCAPD3P42695 1498 aa21.38■■□□□ 1.01
COL4A3-204ENST00000469504 ATAD2BQ9ULI0 1458 aa21.28■■□□□ 1
COL4A3-204ENST00000469504 SMARCA2P51531 1590 aa21.27■■□□□ 1
COL4A3-204ENST00000469504 SMARCA4P51532 1647 aa21.26■□□□□ 0.99
COL4A3-204ENST00000469504 HMGXB3Q12766 1538 aa21.24■□□□□ 0.99
COL4A3-204ENST00000469504 BAZ1AQ9NRL2 1556 aaPredicted RBP21.23■□□□□ 0.99
COL4A3-204ENST00000469504 PEG3Q9GZU2 1588 aa21.14■□□□□ 0.97
COL4A3-204ENST00000469504 BAZ1BQ9UIG0 1483 aaKnown RBP21.08■□□□□ 0.97
COL4A3-204ENST00000469504 ERCC6Q03468 1493 aa21.04■□□□□ 0.96
COL4A3-204ENST00000469504 CUX2O14529 1486 aa21.03■□□□□ 0.96
COL4A3-204ENST00000469504 MROH2BQ7Z745 1585 aa20.98■□□□□ 0.95
COL4A3-204ENST00000469504 LAMC3Q9Y6N6 1575 aa20.87■□□□□ 0.93
COL4A3-204ENST00000469504 NESP48681 1621 aa20.86■□□□□ 0.93
COL4A3-204ENST00000469504 DNAJC5Q9H3Z4 198 aa20.84■□□□□ 0.93
COL4A3-204ENST00000469504 PDS5BQ9NTI5 1447 aa20.78■□□□□ 0.92
COL4A3-204ENST00000469504 CADPSQ9ULU8 1353 aa20.72■□□□□ 0.91
COL4A3-204ENST00000469504 WIZO95785 1651 aa20.7■□□□□ 0.91
COL4A3-204ENST00000469504 THOC2Q8NI27 1593 aaKnown RBP20.7■□□□□ 0.9
COL4A3-204ENST00000469504 RSF1Q96T23 1441 aaPredicted RBP20.63■□□□□ 0.89
COL4A3-204ENST00000469504 KIF21AQ7Z4S6 1674 aa20.6■□□□□ 0.89
COL4A3-204ENST00000469504 TOP2AP11388 1531 aaKnown RBP20.55■□□□□ 0.88
COL4A3-204ENST00000469504 MRC2Q9UBG0 1479 aa20.54■□□□□ 0.88
COL4A3-204ENST00000469504 CFTRP13569 1480 aa20.5■□□□□ 0.87
COL4A3-204ENST00000469504 WDR62O43379 1518 aa20.49■□□□□ 0.87
COL4A3-204ENST00000469504 CEP164Q9UPV0 1460 aa20.48■□□□□ 0.87
COL4A3-204ENST00000469504 FANCD2Q9BXW9 1451 aa20.45■□□□□ 0.86
COL4A3-204ENST00000469504 SENP3Q9H4L4 574 aaPredicted RBP20.38■□□□□ 0.85
COL4A3-204ENST00000469504 CCDC88BA6NC98 1476 aa20.28■□□□□ 0.84
COL4A3-204ENST00000469504 PRDM2Q13029 1718 aa20.24■□□□□ 0.83
COL4A3-204ENST00000469504 URB2Q14146 1524 aaKnown RBP20.23■□□□□ 0.83
COL4A3-204ENST00000469504 ABCC8Q09428 1581 aa20.13■□□□□ 0.81
COL4A3-204ENST00000469504 IFT140Q96RY7 1462 aa20.1■□□□□ 0.81
COL4A3-204ENST00000469504 TOPBP1Q92547 1522 aa20.07■□□□□ 0.8
COL4A3-204ENST00000469504 OSCARQ8IYS5 282 aa20.05■□□□□ 0.8
COL4A3-204ENST00000469504 PHF23Q9BUL5 403 aaPredicted RBP20.03■□□□□ 0.8
COL4A3-204ENST00000469504 DNMBPQ6XZF7 1577 aa20.02■□□□□ 0.8
COL4A3-204ENST00000469504 ZNF608Q9ULD9 1512 aaPredicted RBP19.95■□□□□ 0.78
COL4A3-204ENST00000469504 EIF4G3O43432 1585 aaKnown RBP19.87■□□□□ 0.77
COL4A3-204ENST00000469504 POLA1P09884 1462 aaPredicted RBP19.87■□□□□ 0.77
COL4A3-204ENST00000469504 TRIM41Q8WV44 630 aa19.87■□□□□ 0.77
COL4A3-204ENST00000469504 TARBP1Q13395 1621 aaKnown RBP19.86■□□□□ 0.77
COL4A3-204ENST00000469504 WDR97A6NE52 1622 aa19.8■□□□□ 0.76
COL4A3-204ENST00000469504 SOGA1O94964 1423 aa19.79■□□□□ 0.76
COL4A3-204ENST00000469504 AQRO60306 1485 aaKnown RBP eCLIP19.79■□□□□ 0.76
COL4A3-204ENST00000469504 FGD5Q6ZNL6 1462 aa19.74■□□□□ 0.75
COL4A3-204ENST00000469504 RAD54L2Q9Y4B4 1467 aa19.73■□□□□ 0.75
COL4A3-204ENST00000469504 CUX1P39880 1505 aa19.72■□□□□ 0.75
COL4A3-204ENST00000469504 SUPT5HO00267 1087 aaKnown RBP19.71■□□□□ 0.75
COL4A3-204ENST00000469504 RIMBP3CA6NJZ7 1639 aa19.69■□□□□ 0.74
COL4A3-204ENST00000469504 RIMBP3BA6NNM3 1639 aa19.69■□□□□ 0.74
COL4A3-204ENST00000469504 RIMBP3Q9UFD9 1639 aa19.69■□□□□ 0.74
COL4A3-204ENST00000469504 ARHGEF11O15085 1522 aa19.69■□□□□ 0.74
COL4A3-204ENST00000469504 TDRD9Q8NDG6 1382 aaKnown RBP19.69■□□□□ 0.74
COL4A3-204ENST00000469504 MAGI1Q96QZ7 1491 aaPredicted RBP19.65■□□□□ 0.74
COL4A3-204ENST00000469504 CHD1O14646 1710 aa19.65■□□□□ 0.74
COL4A3-204ENST00000469504 FBLN2P98095 1184 aa19.64■□□□□ 0.73
COL4A3-204ENST00000469504 GRIN2BQ13224 1484 aa19.64■□□□□ 0.73
COL4A3-204ENST00000469504 SNAPC4Q5SXM2 1469 aa19.62■□□□□ 0.73
COL4A3-204ENST00000469504 ABCA10Q8WWZ4 1543 aa19.58■□□□□ 0.73
COL4A3-204ENST00000469504 CHMP7Q8WUX9 453 aaPredicted RBP19.57■□□□□ 0.72
COL4A3-204ENST00000469504 SYNJ2O15056 1496 aa19.56■□□□□ 0.72
COL4A3-204ENST00000469504 GAPVD1Q14C86 1478 aa19.55■□□□□ 0.72
COL4A3-204ENST00000469504 SYNJ1O43426 1573 aa19.54■□□□□ 0.72
COL4A3-204ENST00000469504 WRNQ14191 1432 aaPredicted RBP eCLIP19.53■□□□□ 0.72
COL4A3-204ENST00000469504 CYB5RLQ6IPT4 315 aa19.51■□□□□ 0.71
COL4A3-204ENST00000469504 CLASP1Q7Z460 1538 aa19.51■□□□□ 0.71
COL4A3-204ENST00000469504 ABCA5Q8WWZ7 1642 aa19.5■□□□□ 0.71
COL4A3-204ENST00000469504 ARAP1Q96P48 1450 aa19.48■□□□□ 0.71
COL4A3-204ENST00000469504 TOP2BQ02880 1626 aa19.48■□□□□ 0.71
COL4A3-204ENST00000469504 PBRM1Q86U86 1689 aa19.48■□□□□ 0.71
COL4A3-204ENST00000469504 BIVM-ERCC5R4GMW8 1640 aa19.47■□□□□ 0.71
COL4A3-204ENST00000469504 GRIN2AQ12879 1464 aa19.36■□□□□ 0.69
COL4A3-204ENST00000469504 ERICH3Q5RHP9 1530 aa19.35■□□□□ 0.69
COL4A3-204ENST00000469504 FHAD1B1AJZ9 1412 aa19.34■□□□□ 0.69
COL4A3-204ENST00000469504 ADAMTS12P58397 1594 aa19.34■□□□□ 0.69
COL4A3-204ENST00000469504 NUP160Q12769 1436 aa19.31■□□□□ 0.68
COL4A3-204ENST00000469504 TRHP20396 242 aaPredicted RBP19.26■□□□□ 0.67
COL4A3-204ENST00000469504 CEP170Q5SW79 1584 aa19.23■□□□□ 0.67
COL4A3-204ENST00000469504 SHROOM2Q13796 1616 aa19.19■□□□□ 0.66
COL4A3-204ENST00000469504 KIF27Q86VH2 1401 aa19.14■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 46.6 ms