RNA–Protein interactions for RNA: ENST00000468565.1

COL27A1-203, Transcript of collagen type XXVII alpha 1 chain, humanhuman

TSL 2

Gene COL27A1, Length 1,946 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL27A1-203ENST00000468565 NISCHQ9Y2I1 1504 aa35.55■■■■□ 3.28
COL27A1-203ENST00000468565 CCDC180Q9P1Z9 1646 aa31.79■■■□□ 2.68
COL27A1-203ENST00000468565 ABCC9O60706 1549 aa31.17■■■□□ 2.58
COL27A1-203ENST00000468565 RB1CC1Q8TDY2 1594 aa29.97■■■□□ 2.39
COL27A1-203ENST00000468565 NACADO15069 1562 aa29.89■■■□□ 2.37
COL27A1-203ENST00000468565 MYO15BQ96JP2 1530 aa29.66■■■□□ 2.34
COL27A1-203ENST00000468565 DCAF8L2P0C7V8 631 aa29.65■■■□□ 2.34
COL27A1-203ENST00000468565 ZCCHC6Q5VYS8 1495 aaKnown RBP29.58■■■□□ 2.33
COL27A1-203ENST00000468565 DCAF1Q9Y4B6 1507 aa29.45■■■□□ 2.3
COL27A1-203ENST00000468565 UNC13AQ9UPW8 1703 aa29.36■■■□□ 2.29
COL27A1-203ENST00000468565 BICRAQ9NZM4 1560 aa29.06■■■□□ 2.24
COL27A1-203ENST00000468565 PABPN1Q86U42 306 aaKnown RBP eCLIP29.03■■■□□ 2.245e-18■■■■■ 53
COL27A1-203ENST00000468565 SCRIBQ14160 1630 aa28.89■■■□□ 2.22
COL27A1-203ENST00000468565 SHROOM4Q9ULL8 1493 aa28.79■■■□□ 2.2
COL27A1-203ENST00000468565 DNAJC5BQ9UF47 199 aa28.76■■■□□ 2.19
COL27A1-203ENST00000468565 AEBP2Q6ZN18 517 aaPredicted RBP28.45■■■□□ 2.15
COL27A1-203ENST00000468565 EIF4G1Q04637 1599 aaKnown RBP28.31■■■□□ 2.12
COL27A1-203ENST00000468565 CHIC1Q5VXU3 224 aa28.28■■■□□ 2.12
COL27A1-203ENST00000468565 CC2D2AQ9P2K1 1620 aa28.24■■■□□ 2.11
COL27A1-203ENST00000468565 CECR2Q9BXF3 1484 aa28.05■■■□□ 2.08
COL27A1-203ENST00000468565 SMARCA4P51532 1647 aa27.65■■■□□ 2.02
COL27A1-203ENST00000468565 BAZ1AQ9NRL2 1556 aaPredicted RBP27.58■■■□□ 2.01
COL27A1-203ENST00000468565 NCAPD3P42695 1498 aa27.54■■■□□ 2
COL27A1-203ENST00000468565 ATAD2BQ9ULI0 1458 aa27.52■■■□□ 2
COL27A1-203ENST00000468565 SMARCA2P51531 1590 aa27.51■■□□□ 1.99
COL27A1-203ENST00000468565 HMGXB3Q12766 1538 aa27.43■■□□□ 1.98
COL27A1-203ENST00000468565 PEG3Q9GZU2 1588 aa27.41■■□□□ 1.98
COL27A1-203ENST00000468565 MROH2BQ7Z745 1585 aa27.37■■□□□ 1.97
COL27A1-203ENST00000468565 BAZ1BQ9UIG0 1483 aaKnown RBP27.28■■□□□ 1.96
COL27A1-203ENST00000468565 WIZO95785 1651 aa27.09■■□□□ 1.93
COL27A1-203ENST00000468565 RSF1Q96T23 1441 aaPredicted RBP26.96■■□□□ 1.91
COL27A1-203ENST00000468565 NESP48681 1621 aa26.91■■□□□ 1.9
COL27A1-203ENST00000468565 ERCC6Q03468 1493 aa26.9■■□□□ 1.9
COL27A1-203ENST00000468565 LAMC3Q9Y6N6 1575 aa26.89■■□□□ 1.9
COL27A1-203ENST00000468565 TOP2AP11388 1531 aaKnown RBP26.8■■□□□ 1.88
COL27A1-203ENST00000468565 CUX2O14529 1486 aa26.74■■□□□ 1.87
COL27A1-203ENST00000468565 CADPSQ9ULU8 1353 aa26.7■■□□□ 1.87
COL27A1-203ENST00000468565 KIF21AQ7Z4S6 1674 aa26.68■■□□□ 1.86
COL27A1-203ENST00000468565 PDS5BQ9NTI5 1447 aa26.67■■□□□ 1.86
COL27A1-203ENST00000468565 THOC2Q8NI27 1593 aaKnown RBP26.63■■□□□ 1.85
COL27A1-203ENST00000468565 CFTRP13569 1480 aa26.53■■□□□ 1.84
COL27A1-203ENST00000468565 PRDM2Q13029 1718 aa26.44■■□□□ 1.82
COL27A1-203ENST00000468565 CCDC88BA6NC98 1476 aa26.44■■□□□ 1.82
COL27A1-203ENST00000468565 MRC2Q9UBG0 1479 aa26.42■■□□□ 1.82
COL27A1-203ENST00000468565 FANCD2Q9BXW9 1451 aa26.41■■□□□ 1.82
COL27A1-203ENST00000468565 CEP164Q9UPV0 1460 aa26.41■■□□□ 1.82
COL27A1-203ENST00000468565 WDR62O43379 1518 aa26.37■■□□□ 1.81
COL27A1-203ENST00000468565 URB2Q14146 1524 aaKnown RBP26.17■■□□□ 1.78
COL27A1-203ENST00000468565 DNAJC5Q9H3Z4 198 aa26.1■■□□□ 1.77
COL27A1-203ENST00000468565 SUPT5HO00267 1087 aaKnown RBP26.03■■□□□ 1.76
COL27A1-203ENST00000468565 ABCC8Q09428 1581 aa25.99■■□□□ 1.75
COL27A1-203ENST00000468565 TOPBP1Q92547 1522 aa25.98■■□□□ 1.75
COL27A1-203ENST00000468565 DNMBPQ6XZF7 1577 aa25.96■■□□□ 1.75
COL27A1-203ENST00000468565 IFT140Q96RY7 1462 aa25.87■■□□□ 1.73
COL27A1-203ENST00000468565 TARBP1Q13395 1621 aaKnown RBP25.75■■□□□ 1.71
COL27A1-203ENST00000468565 ZNF608Q9ULD9 1512 aaPredicted RBP25.74■■□□□ 1.71
COL27A1-203ENST00000468565 POLA1P09884 1462 aaPredicted RBP25.74■■□□□ 1.71
COL27A1-203ENST00000468565 CUX1P39880 1505 aa25.69■■□□□ 1.7
COL27A1-203ENST00000468565 EIF4G3O43432 1585 aaKnown RBP25.69■■□□□ 1.7
COL27A1-203ENST00000468565 FGD5Q6ZNL6 1462 aa25.64■■□□□ 1.69
COL27A1-203ENST00000468565 SOGA1O94964 1423 aa25.6■■□□□ 1.69
COL27A1-203ENST00000468565 RAD54L2Q9Y4B4 1467 aa25.59■■□□□ 1.69
COL27A1-203ENST00000468565 WDR97A6NE52 1622 aa25.58■■□□□ 1.69
COL27A1-203ENST00000468565 AQRO60306 1485 aaKnown RBP eCLIP25.55■■□□□ 1.686e-12■■■■□ 25.4
COL27A1-203ENST00000468565 OSCARQ8IYS5 282 aa25.52■■□□□ 1.68
COL27A1-203ENST00000468565 BIVM-ERCC5R4GMW8 1640 aa25.48■■□□□ 1.67
COL27A1-203ENST00000468565 TOP2BQ02880 1626 aa25.45■■□□□ 1.67
COL27A1-203ENST00000468565 TDRD9Q8NDG6 1382 aaKnown RBP25.45■■□□□ 1.66
COL27A1-203ENST00000468565 WRNQ14191 1432 aaPredicted RBP eCLIP25.44■■□□□ 1.66
COL27A1-203ENST00000468565 CHD1O14646 1710 aa25.43■■□□□ 1.66
COL27A1-203ENST00000468565 SYNJ1O43426 1573 aa25.41■■□□□ 1.66
COL27A1-203ENST00000468565 ABCA10Q8WWZ4 1543 aa25.4■■□□□ 1.66
COL27A1-203ENST00000468565 PBRM1Q86U86 1689 aa25.36■■□□□ 1.65
COL27A1-203ENST00000468565 GRIN2BQ13224 1484 aa25.36■■□□□ 1.65
COL27A1-203ENST00000468565 ABCA5Q8WWZ7 1642 aa25.35■■□□□ 1.65
COL27A1-203ENST00000468565 SNAPC4Q5SXM2 1469 aa25.34■■□□□ 1.65
COL27A1-203ENST00000468565 MAGI1Q96QZ7 1491 aaPredicted RBP25.33■■□□□ 1.65
COL27A1-203ENST00000468565 GAPVD1Q14C86 1478 aa25.32■■□□□ 1.64
COL27A1-203ENST00000468565 FBLN2P98095 1184 aa25.24■■□□□ 1.63
COL27A1-203ENST00000468565 SYNJ2O15056 1496 aa25.22■■□□□ 1.63
COL27A1-203ENST00000468565 RIMBP3CA6NJZ7 1639 aa25.21■■□□□ 1.63
COL27A1-203ENST00000468565 RIMBP3BA6NNM3 1639 aa25.21■■□□□ 1.63
COL27A1-203ENST00000468565 RIMBP3Q9UFD9 1639 aa25.21■■□□□ 1.63
COL27A1-203ENST00000468565 CHMP7Q8WUX9 453 aaPredicted RBP25.18■■□□□ 1.62
COL27A1-203ENST00000468565 PHF23Q9BUL5 403 aaPredicted RBP25.18■■□□□ 1.62
COL27A1-203ENST00000468565 ARHGEF11O15085 1522 aa25.16■■□□□ 1.62
COL27A1-203ENST00000468565 CLASP1Q7Z460 1538 aa25.13■■□□□ 1.61
COL27A1-203ENST00000468565 ADAMTS12P58397 1594 aa25.11■■□□□ 1.61
COL27A1-203ENST00000468565 ERICH3Q5RHP9 1530 aa25.11■■□□□ 1.61
COL27A1-203ENST00000468565 TRIM41Q8WV44 630 aa25.1■■□□□ 1.61
COL27A1-203ENST00000468565 GRIN2AQ12879 1464 aa25.03■■□□□ 1.6
COL27A1-203ENST00000468565 FHAD1B1AJZ9 1412 aa25.03■■□□□ 1.6
COL27A1-203ENST00000468565 NUP160Q12769 1436 aa24.94■■□□□ 1.58
COL27A1-203ENST00000468565 ARAP1Q96P48 1450 aa24.93■■□□□ 1.58
COL27A1-203ENST00000468565 CEP170Q5SW79 1584 aa24.93■■□□□ 1.58
COL27A1-203ENST00000468565 KIF27Q86VH2 1401 aa24.93■■□□□ 1.58
COL27A1-203ENST00000468565 CUL7Q14999 1698 aa24.87■■□□□ 1.57
COL27A1-203ENST00000468565 CYB5RLQ6IPT4 315 aa24.86■■□□□ 1.57
COL27A1-203ENST00000468565 SHROOM2Q13796 1616 aa24.83■■□□□ 1.56
COL27A1-203ENST00000468565 IGF1RP08069 1367 aa24.82■■□□□ 1.56
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms