RNA–Protein interactions for RNA: ENST00000460827.1

PCYT1A-213, Transcript of phosphate cytidylyltransferase 1, choline, alpha, humanhuman

TSL 2

Gene PCYT1A, Length 562 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCYT1A-213ENST00000460827 NISCHQ9Y2I1 1504 aa29.91■■■□□ 2.38
PCYT1A-213ENST00000460827 ABCC9O60706 1549 aa27.44■■□□□ 1.98
PCYT1A-213ENST00000460827 AEBP2Q6ZN18 517 aaPredicted RBP27.26■■□□□ 1.95
PCYT1A-213ENST00000460827 CCDC180Q9P1Z9 1646 aa27.03■■□□□ 1.92
PCYT1A-213ENST00000460827 DNAJC5BQ9UF47 199 aa26.19■■□□□ 1.78
PCYT1A-213ENST00000460827 RB1CC1Q8TDY2 1594 aa25.91■■□□□ 1.74
PCYT1A-213ENST00000460827 NACADO15069 1562 aa25.64■■□□□ 1.69
PCYT1A-213ENST00000460827 CHIC1Q5VXU3 224 aa25.62■■□□□ 1.69
PCYT1A-213ENST00000460827 PABPN1Q86U42 306 aaKnown RBP eCLIP25.47■■□□□ 1.67
PCYT1A-213ENST00000460827 UNC13AQ9UPW8 1703 aa25.4■■□□□ 1.66
PCYT1A-213ENST00000460827 DCAF8L2P0C7V8 631 aa25.36■■□□□ 1.65
PCYT1A-213ENST00000460827 BICRAQ9NZM4 1560 aa25.24■■□□□ 1.63
PCYT1A-213ENST00000460827 MYO15BQ96JP2 1530 aa25.17■■□□□ 1.62
PCYT1A-213ENST00000460827 SHROOM4Q9ULL8 1493 aa24.8■■□□□ 1.56
PCYT1A-213ENST00000460827 CC2D2AQ9P2K1 1620 aa24.78■■□□□ 1.56
PCYT1A-213ENST00000460827 CECR2Q9BXF3 1484 aa24.76■■□□□ 1.55
PCYT1A-213ENST00000460827 ZCCHC6Q5VYS8 1495 aaKnown RBP24.7■■□□□ 1.54
PCYT1A-213ENST00000460827 DCAF1Q9Y4B6 1507 aa24.69■■□□□ 1.54
PCYT1A-213ENST00000460827 EIF4G1Q04637 1599 aaKnown RBP24.62■■□□□ 1.53
PCYT1A-213ENST00000460827 SCRIBQ14160 1630 aa24.59■■□□□ 1.53
PCYT1A-213ENST00000460827 DNAJC5Q9H3Z4 198 aa24.33■■□□□ 1.49
PCYT1A-213ENST00000460827 CUX2O14529 1486 aa23.82■■□□□ 1.4
PCYT1A-213ENST00000460827 NCAPD3P42695 1498 aa23.69■■□□□ 1.38
PCYT1A-213ENST00000460827 ERCC6Q03468 1493 aa23.68■■□□□ 1.38
PCYT1A-213ENST00000460827 ATAD2BQ9ULI0 1458 aa23.56■■□□□ 1.36
PCYT1A-213ENST00000460827 HMGXB3Q12766 1538 aa23.48■■□□□ 1.35
PCYT1A-213ENST00000460827 NESP48681 1621 aa23.48■■□□□ 1.35
PCYT1A-213ENST00000460827 SMARCA2P51531 1590 aa23.45■■□□□ 1.34
PCYT1A-213ENST00000460827 SMARCA4P51532 1647 aa23.43■■□□□ 1.34
PCYT1A-213ENST00000460827 THOC2Q8NI27 1593 aaKnown RBP23.32■■□□□ 1.32
PCYT1A-213ENST00000460827 SENP3Q9H4L4 574 aaPredicted RBP23.31■■□□□ 1.32
PCYT1A-213ENST00000460827 BAZ1BQ9UIG0 1483 aaKnown RBP23.28■■□□□ 1.32
PCYT1A-213ENST00000460827 BAZ1AQ9NRL2 1556 aaPredicted RBP23.23■■□□□ 1.31
PCYT1A-213ENST00000460827 PEG3Q9GZU2 1588 aa23.22■■□□□ 1.31
PCYT1A-213ENST00000460827 LAMC3Q9Y6N6 1575 aa23.22■■□□□ 1.31
PCYT1A-213ENST00000460827 KIF21AQ7Z4S6 1674 aa23.16■■□□□ 1.3
PCYT1A-213ENST00000460827 PDS5BQ9NTI5 1447 aa23.08■■□□□ 1.28
PCYT1A-213ENST00000460827 MROH2BQ7Z745 1585 aa23.06■■□□□ 1.28
PCYT1A-213ENST00000460827 TRIM41Q8WV44 630 aa23.02■■□□□ 1.28
PCYT1A-213ENST00000460827 PHF23Q9BUL5 403 aaPredicted RBP22.98■■□□□ 1.27
PCYT1A-213ENST00000460827 CADPSQ9ULU8 1353 aa22.94■■□□□ 1.26
PCYT1A-213ENST00000460827 MRC2Q9UBG0 1479 aa22.92■■□□□ 1.26
PCYT1A-213ENST00000460827 WDR62O43379 1518 aa22.89■■□□□ 1.26
PCYT1A-213ENST00000460827 WIZO95785 1651 aa22.75■■□□□ 1.23
PCYT1A-213ENST00000460827 CEP164Q9UPV0 1460 aa22.73■■□□□ 1.23
PCYT1A-213ENST00000460827 FANCD2Q9BXW9 1451 aa22.67■■□□□ 1.22
PCYT1A-213ENST00000460827 OSCARQ8IYS5 282 aa22.65■■□□□ 1.22
PCYT1A-213ENST00000460827 CFTRP13569 1480 aa22.6■■□□□ 1.21
PCYT1A-213ENST00000460827 URB2Q14146 1524 aaKnown RBP22.55■■□□□ 1.2
PCYT1A-213ENST00000460827 RIMBP3CA6NJZ7 1639 aa22.44■■□□□ 1.18
PCYT1A-213ENST00000460827 RIMBP3BA6NNM3 1639 aa22.44■■□□□ 1.18
PCYT1A-213ENST00000460827 RIMBP3Q9UFD9 1639 aa22.44■■□□□ 1.18
PCYT1A-213ENST00000460827 TOP2AP11388 1531 aaKnown RBP22.41■■□□□ 1.18
PCYT1A-213ENST00000460827 RSF1Q96T23 1441 aaPredicted RBP22.41■■□□□ 1.18
PCYT1A-213ENST00000460827 PRDM2Q13029 1718 aa22.35■■□□□ 1.17
PCYT1A-213ENST00000460827 ZNF608Q9ULD9 1512 aaPredicted RBP22.34■■□□□ 1.17
PCYT1A-213ENST00000460827 ARHGEF11O15085 1522 aa22.31■■□□□ 1.16
PCYT1A-213ENST00000460827 IFT140Q96RY7 1462 aa22.29■■□□□ 1.16
PCYT1A-213ENST00000460827 TOPBP1Q92547 1522 aa22.21■■□□□ 1.15
PCYT1A-213ENST00000460827 EIF4G3O43432 1585 aaKnown RBP22.18■■□□□ 1.14
PCYT1A-213ENST00000460827 CCDC88BA6NC98 1476 aa22.18■■□□□ 1.14
PCYT1A-213ENST00000460827 CYB5RLQ6IPT4 315 aa22.15■■□□□ 1.14
PCYT1A-213ENST00000460827 CHD1O14646 1710 aa22.11■■□□□ 1.13
PCYT1A-213ENST00000460827 ABCC8Q09428 1581 aa22.1■■□□□ 1.13
PCYT1A-213ENST00000460827 DNMBPQ6XZF7 1577 aa22.08■■□□□ 1.13
PCYT1A-213ENST00000460827 ARAP1Q96P48 1450 aa22.08■■□□□ 1.12
PCYT1A-213ENST00000460827 TARBP1Q13395 1621 aaKnown RBP22.07■■□□□ 1.12
PCYT1A-213ENST00000460827 AQRO60306 1485 aaKnown RBP eCLIP22.07■■□□□ 1.123e-10■■■■■ 43
PCYT1A-213ENST00000460827 TRHP20396 242 aaPredicted RBP22■■□□□ 1.11
PCYT1A-213ENST00000460827 POLA1P09884 1462 aaPredicted RBP21.96■■□□□ 1.11
PCYT1A-213ENST00000460827 FBLN2P98095 1184 aa21.95■■□□□ 1.1
PCYT1A-213ENST00000460827 RAD54L2Q9Y4B4 1467 aa21.89■■□□□ 1.09
PCYT1A-213ENST00000460827 TDRD9Q8NDG6 1382 aaKnown RBP21.86■■□□□ 1.09
PCYT1A-213ENST00000460827 CLASP1Q7Z460 1538 aa21.85■■□□□ 1.09
PCYT1A-213ENST00000460827 SOGA1O94964 1423 aa21.83■■□□□ 1.09
PCYT1A-213ENST00000460827 SNAPC4Q5SXM2 1469 aa21.82■■□□□ 1.08
PCYT1A-213ENST00000460827 WDR97A6NE52 1622 aa21.77■■□□□ 1.08
PCYT1A-213ENST00000460827 FOXD1Q16676 465 aa21.76■■□□□ 1.07
PCYT1A-213ENST00000460827 SYNJ1O43426 1573 aa21.75■■□□□ 1.07
PCYT1A-213ENST00000460827 FGD5Q6ZNL6 1462 aa21.75■■□□□ 1.07
PCYT1A-213ENST00000460827 MAGI1Q96QZ7 1491 aaPredicted RBP21.74■■□□□ 1.07
PCYT1A-213ENST00000460827 CHMP7Q8WUX9 453 aaPredicted RBP21.73■■□□□ 1.07
PCYT1A-213ENST00000460827 GRIN2BQ13224 1484 aa21.69■■□□□ 1.06
PCYT1A-213ENST00000460827 CUX1P39880 1505 aa21.69■■□□□ 1.06
PCYT1A-213ENST00000460827 SYNJ2O15056 1496 aa21.68■■□□□ 1.06
PCYT1A-213ENST00000460827 GAPVD1Q14C86 1478 aa21.62■■□□□ 1.05
PCYT1A-213ENST00000460827 PBRM1Q86U86 1689 aa21.6■■□□□ 1.05
PCYT1A-213ENST00000460827 ABCA5Q8WWZ7 1642 aa21.51■■□□□ 1.03
PCYT1A-213ENST00000460827 ERCC6L2Q5T890 1561 aa21.49■■□□□ 1.03
PCYT1A-213ENST00000460827 ABCA10Q8WWZ4 1543 aa21.49■■□□□ 1.03
PCYT1A-213ENST00000460827 GRIN2AQ12879 1464 aa21.42■■□□□ 1.02
PCYT1A-213ENST00000460827 CEP170Q5SW79 1584 aa21.4■■□□□ 1.02
PCYT1A-213ENST00000460827 NUP160Q12769 1436 aa21.38■■□□□ 1.01
PCYT1A-213ENST00000460827 ADAMTS12P58397 1594 aa21.36■■□□□ 1.01
PCYT1A-213ENST00000460827 SHROOM2Q13796 1616 aa21.35■■□□□ 1.01
PCYT1A-213ENST00000460827 KIF13AQ9H1H9 1805 aa21.32■■□□□ 1
PCYT1A-213ENST00000460827 WRNQ14191 1432 aaPredicted RBP eCLIP21.29■■□□□ 1
PCYT1A-213ENST00000460827 FHAD1B1AJZ9 1412 aa21.27■■□□□ 1
PCYT1A-213ENST00000460827 BIVM-ERCC5R4GMW8 1640 aa21.22■□□□□ 0.99
PCYT1A-213ENST00000460827 TOP2BQ02880 1626 aa21.21■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms