RNA–Protein interactions for RNA: ENST00000459918.1

HPS4-207, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 5

Gene HPS4, Length 556 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-207ENST00000459918 NISCHQ9Y2I1 1504 aa19.95■□□□□ 0.78
HPS4-207ENST00000459918 AEBP2Q6ZN18 517 aaPredicted RBP19.02■□□□□ 0.64
HPS4-207ENST00000459918 ABCC9O60706 1549 aa18.32■□□□□ 0.52
HPS4-207ENST00000459918 CCDC180Q9P1Z9 1646 aa18.09■□□□□ 0.49
HPS4-207ENST00000459918 CHIC1Q5VXU3 224 aa17.93■□□□□ 0.46
HPS4-207ENST00000459918 RB1CC1Q8TDY2 1594 aa17.34■□□□□ 0.37
HPS4-207ENST00000459918 DNAJC5BQ9UF47 199 aa17.23■□□□□ 0.35
HPS4-207ENST00000459918 NACADO15069 1562 aa17.11■□□□□ 0.33
HPS4-207ENST00000459918 DCAF8L2P0C7V8 631 aa17.07■□□□□ 0.32
HPS4-207ENST00000459918 UNC13AQ9UPW8 1703 aa16.98■□□□□ 0.31
HPS4-207ENST00000459918 PABPN1Q86U42 306 aaKnown RBP eCLIP16.97■□□□□ 0.31
HPS4-207ENST00000459918 BICRAQ9NZM4 1560 aa16.75■□□□□ 0.27
HPS4-207ENST00000459918 MYO15BQ96JP2 1530 aa16.71■□□□□ 0.27
HPS4-207ENST00000459918 CC2D2AQ9P2K1 1620 aa16.53■□□□□ 0.24
HPS4-207ENST00000459918 SHROOM4Q9ULL8 1493 aa16.52■□□□□ 0.23
HPS4-207ENST00000459918 SCRIBQ14160 1630 aa16.51■□□□□ 0.23
HPS4-207ENST00000459918 CECR2Q9BXF3 1484 aa16.5■□□□□ 0.23
HPS4-207ENST00000459918 ZCCHC6Q5VYS8 1495 aaKnown RBP16.48■□□□□ 0.23
HPS4-207ENST00000459918 DCAF1Q9Y4B6 1507 aa16.43■□□□□ 0.22
HPS4-207ENST00000459918 EIF4G1Q04637 1599 aaKnown RBP16.43■□□□□ 0.22
HPS4-207ENST00000459918 SENP3Q9H4L4 574 aaPredicted RBP16.16■□□□□ 0.18
HPS4-207ENST00000459918 DNAJC5Q9H3Z4 198 aa16.04■□□□□ 0.16
HPS4-207ENST00000459918 PHF23Q9BUL5 403 aaPredicted RBP15.96■□□□□ 0.15
HPS4-207ENST00000459918 ERCC6Q03468 1493 aa15.89■□□□□ 0.13
HPS4-207ENST00000459918 CUX2O14529 1486 aa15.84■□□□□ 0.13
HPS4-207ENST00000459918 NCAPD3P42695 1498 aa15.73■□□□□ 0.11
HPS4-207ENST00000459918 SMARCA2P51531 1590 aa15.69■□□□□ 0.1
HPS4-207ENST00000459918 ATAD2BQ9ULI0 1458 aa15.68■□□□□ 0.1
HPS4-207ENST00000459918 SMARCA4P51532 1647 aa15.67■□□□□ 0.1
HPS4-207ENST00000459918 HMGXB3Q12766 1538 aa15.66■□□□□ 0.1
HPS4-207ENST00000459918 NESP48681 1621 aa15.63■□□□□ 0.09
HPS4-207ENST00000459918 BAZ1BQ9UIG0 1483 aaKnown RBP15.59■□□□□ 0.09
HPS4-207ENST00000459918 BAZ1AQ9NRL2 1556 aaPredicted RBP15.56■□□□□ 0.08
HPS4-207ENST00000459918 THOC2Q8NI27 1593 aaKnown RBP15.54■□□□□ 0.08
HPS4-207ENST00000459918 KIF21AQ7Z4S6 1674 aa15.51■□□□□ 0.07
HPS4-207ENST00000459918 LAMC3Q9Y6N6 1575 aa15.51■□□□□ 0.07
HPS4-207ENST00000459918 PEG3Q9GZU2 1588 aa15.45■□□□□ 0.06
HPS4-207ENST00000459918 PDS5BQ9NTI5 1447 aa15.42■□□□□ 0.06
HPS4-207ENST00000459918 TRIM41Q8WV44 630 aa15.39■□□□□ 0.05
HPS4-207ENST00000459918 MROH2BQ7Z745 1585 aa15.38■□□□□ 0.05
HPS4-207ENST00000459918 MRC2Q9UBG0 1479 aa15.3■□□□□ 0.04
HPS4-207ENST00000459918 CADPSQ9ULU8 1353 aa15.26■□□□□ 0.03
HPS4-207ENST00000459918 WDR62O43379 1518 aa15.26■□□□□ 0.03
HPS4-207ENST00000459918 WIZO95785 1651 aa15.25■□□□□ 0.03
HPS4-207ENST00000459918 CEP164Q9UPV0 1460 aa15.22■□□□□ 0.03
HPS4-207ENST00000459918 FANCD2Q9BXW9 1451 aa15.15■□□□□ 0.02
HPS4-207ENST00000459918 FOXD1Q16676 465 aa15.12■□□□□ 0.01
HPS4-207ENST00000459918 OSCARQ8IYS5 282 aa15.07■□□□□ 0
HPS4-207ENST00000459918 CFTRP13569 1480 aa15.04■□□□□ -0
HPS4-207ENST00000459918 PRDM2Q13029 1718 aa15.03■□□□□ -0
HPS4-207ENST00000459918 TOP2AP11388 1531 aaKnown RBP15.01□□□□□ -0.01
HPS4-207ENST00000459918 URB2Q14146 1524 aaKnown RBP15.01□□□□□ -0.01
HPS4-207ENST00000459918 RIMBP3CA6NJZ7 1639 aa14.96□□□□□ -0.01
HPS4-207ENST00000459918 RIMBP3BA6NNM3 1639 aa14.96□□□□□ -0.01
HPS4-207ENST00000459918 RIMBP3Q9UFD9 1639 aa14.96□□□□□ -0.01
HPS4-207ENST00000459918 RSF1Q96T23 1441 aaPredicted RBP14.93□□□□□ -0.02
HPS4-207ENST00000459918 IFT140Q96RY7 1462 aa14.89□□□□□ -0.03
HPS4-207ENST00000459918 ZNF608Q9ULD9 1512 aaPredicted RBP14.87□□□□□ -0.03
HPS4-207ENST00000459918 ARHGEF11O15085 1522 aa14.87□□□□□ -0.03
HPS4-207ENST00000459918 EIF4G3O43432 1585 aaKnown RBP14.86□□□□□ -0.03
HPS4-207ENST00000459918 CHD1O14646 1710 aa14.83□□□□□ -0.04
HPS4-207ENST00000459918 TOPBP1Q92547 1522 aa14.82□□□□□ -0.04
HPS4-207ENST00000459918 CCDC88BA6NC98 1476 aa14.8□□□□□ -0.04
HPS4-207ENST00000459918 ABCC8Q09428 1581 aa14.78□□□□□ -0.04
HPS4-207ENST00000459918 DNMBPQ6XZF7 1577 aa14.78□□□□□ -0.04
HPS4-207ENST00000459918 CYB5RLQ6IPT4 315 aa14.77□□□□□ -0.05
HPS4-207ENST00000459918 TRHP20396 242 aaPredicted RBP14.76□□□□□ -0.05
HPS4-207ENST00000459918 FBLN2P98095 1184 aa14.76□□□□□ -0.05
HPS4-207ENST00000459918 AQRO60306 1485 aaKnown RBP eCLIP14.71□□□□□ -0.051e-8■■■■□ 19.4
HPS4-207ENST00000459918 TARBP1Q13395 1621 aaKnown RBP14.71□□□□□ -0.05
HPS4-207ENST00000459918 ARAP1Q96P48 1450 aa14.67□□□□□ -0.06
HPS4-207ENST00000459918 POLA1P09884 1462 aaPredicted RBP14.65□□□□□ -0.06
HPS4-207ENST00000459918 RAD54L2Q9Y4B4 1467 aa14.61□□□□□ -0.07
HPS4-207ENST00000459918 SNAPC4Q5SXM2 1469 aa14.59□□□□□ -0.07
HPS4-207ENST00000459918 SYNJ1O43426 1573 aa14.59□□□□□ -0.07
HPS4-207ENST00000459918 TDRD9Q8NDG6 1382 aaKnown RBP14.59□□□□□ -0.07
HPS4-207ENST00000459918 SOGA1O94964 1423 aa14.58□□□□□ -0.07
HPS4-207ENST00000459918 WDR97A6NE52 1622 aa14.56□□□□□ -0.08
HPS4-207ENST00000459918 CHMP7Q8WUX9 453 aaPredicted RBP14.56□□□□□ -0.08
HPS4-207ENST00000459918 FGD5Q6ZNL6 1462 aa14.56□□□□□ -0.08
HPS4-207ENST00000459918 CLASP1Q7Z460 1538 aa14.54□□□□□ -0.08
HPS4-207ENST00000459918 PBRM1Q86U86 1689 aa14.53□□□□□ -0.08
HPS4-207ENST00000459918 MAGI1Q96QZ7 1491 aaPredicted RBP14.52□□□□□ -0.08
HPS4-207ENST00000459918 GRIN2BQ13224 1484 aa14.5□□□□□ -0.09
HPS4-207ENST00000459918 SYNJ2O15056 1496 aa14.48□□□□□ -0.09
HPS4-207ENST00000459918 CUX1P39880 1505 aa14.47□□□□□ -0.09
HPS4-207ENST00000459918 GAPVD1Q14C86 1478 aa14.43□□□□□ -0.1
HPS4-207ENST00000459918 ABCA5Q8WWZ7 1642 aa14.38□□□□□ -0.11
HPS4-207ENST00000459918 ABCA10Q8WWZ4 1543 aa14.33□□□□□ -0.12
HPS4-207ENST00000459918 GRIN2AQ12879 1464 aa14.31□□□□□ -0.12
HPS4-207ENST00000459918 ERCC6L2Q5T890 1561 aa14.31□□□□□ -0.12
HPS4-207ENST00000459918 ADAMTS12P58397 1594 aa14.3□□□□□ -0.12
HPS4-207ENST00000459918 CEP170Q5SW79 1584 aa14.29□□□□□ -0.12
HPS4-207ENST00000459918 WRNQ14191 1432 aaPredicted RBP eCLIP14.25□□□□□ -0.139e-6■■■■■ 50.1
HPS4-207ENST00000459918 PLPPR3Q6T4P5 718 aa14.25□□□□□ -0.13
HPS4-207ENST00000459918 KIF13AQ9H1H9 1805 aa14.24□□□□□ -0.13
HPS4-207ENST00000459918 SHROOM2Q13796 1616 aa14.23□□□□□ -0.13
HPS4-207ENST00000459918 BIVM-ERCC5R4GMW8 1640 aa14.23□□□□□ -0.13
HPS4-207ENST00000459918 SUPT5HO00267 1087 aaKnown RBP14.22□□□□□ -0.13
HPS4-207ENST00000459918 NUP160Q12769 1436 aa14.22□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 46 ms