RNA–Protein interactions for RNA: ENST00000437983.2

SMAD9-IT1-201, SMAD9 intronic transcript 1, humanhuman

TSL 3 BASIC

Gene SMAD9-IT1, Length 504 nt, Biotype sense intronic.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD9-IT1-201ENST00000437983 NISCHQ9Y2I1 1504 aa32.05■■■□□ 2.72
SMAD9-IT1-201ENST00000437983 ABCC9O60706 1549 aa30.14■■■□□ 2.42
SMAD9-IT1-201ENST00000437983 CHIC1Q5VXU3 224 aa29.44■■■□□ 2.3
SMAD9-IT1-201ENST00000437983 AEBP2Q6ZN18 517 aaPredicted RBP29.29■■■□□ 2.28
SMAD9-IT1-201ENST00000437983 DNAJC5BQ9UF47 199 aa29.21■■■□□ 2.27
SMAD9-IT1-201ENST00000437983 CCDC180Q9P1Z9 1646 aa29.06■■■□□ 2.24
SMAD9-IT1-201ENST00000437983 RB1CC1Q8TDY2 1594 aa28.15■■■□□ 2.1
SMAD9-IT1-201ENST00000437983 PABPN1Q86U42 306 aaKnown RBP eCLIP27.98■■■□□ 2.07
SMAD9-IT1-201ENST00000437983 NACADO15069 1562 aa27.73■■■□□ 2.03
SMAD9-IT1-201ENST00000437983 DCAF8L2P0C7V8 631 aa27.58■■■□□ 2.01
SMAD9-IT1-201ENST00000437983 UNC13AQ9UPW8 1703 aa27.55■■■□□ 2
SMAD9-IT1-201ENST00000437983 BICRAQ9NZM4 1560 aa27.46■■□□□ 1.99
SMAD9-IT1-201ENST00000437983 DNAJC5Q9H3Z4 198 aa27.39■■□□□ 1.98
SMAD9-IT1-201ENST00000437983 CECR2Q9BXF3 1484 aa27.2■■□□□ 1.95
SMAD9-IT1-201ENST00000437983 CC2D2AQ9P2K1 1620 aa27.12■■□□□ 1.93
SMAD9-IT1-201ENST00000437983 MYO15BQ96JP2 1530 aa27■■□□□ 1.91
SMAD9-IT1-201ENST00000437983 EIF4G1Q04637 1599 aaKnown RBP26.83■■□□□ 1.89
SMAD9-IT1-201ENST00000437983 SHROOM4Q9ULL8 1493 aa26.81■■□□□ 1.88
SMAD9-IT1-201ENST00000437983 SCRIBQ14160 1630 aa26.55■■□□□ 1.84
SMAD9-IT1-201ENST00000437983 ZCCHC6Q5VYS8 1495 aaKnown RBP26.36■■□□□ 1.81
SMAD9-IT1-201ENST00000437983 DCAF1Q9Y4B6 1507 aa26.34■■□□□ 1.81
SMAD9-IT1-201ENST00000437983 CUX2O14529 1486 aa26.23■■□□□ 1.79
SMAD9-IT1-201ENST00000437983 PHF23Q9BUL5 403 aaPredicted RBP26.02■■□□□ 1.76
SMAD9-IT1-201ENST00000437983 ERCC6Q03468 1493 aa26.02■■□□□ 1.76
SMAD9-IT1-201ENST00000437983 TRIM41Q8WV44 630 aa25.85■■□□□ 1.73
SMAD9-IT1-201ENST00000437983 NCAPD3P42695 1498 aa25.66■■□□□ 1.7
SMAD9-IT1-201ENST00000437983 NESP48681 1621 aa25.66■■□□□ 1.7
SMAD9-IT1-201ENST00000437983 THOC2Q8NI27 1593 aaKnown RBP25.48■■□□□ 1.67
SMAD9-IT1-201ENST00000437983 ATAD2BQ9ULI0 1458 aa25.48■■□□□ 1.67
SMAD9-IT1-201ENST00000437983 HMGXB3Q12766 1538 aa25.33■■□□□ 1.65
SMAD9-IT1-201ENST00000437983 SMARCA2P51531 1590 aa25.31■■□□□ 1.64
SMAD9-IT1-201ENST00000437983 KIF21AQ7Z4S6 1674 aa25.2■■□□□ 1.63
SMAD9-IT1-201ENST00000437983 SMARCA4P51532 1647 aa25.19■■□□□ 1.62
SMAD9-IT1-201ENST00000437983 LAMC3Q9Y6N6 1575 aa25.18■■□□□ 1.62
SMAD9-IT1-201ENST00000437983 BAZ1BQ9UIG0 1483 aaKnown RBP25.15■■□□□ 1.62
SMAD9-IT1-201ENST00000437983 PDS5BQ9NTI5 1447 aa25.09■■□□□ 1.61
SMAD9-IT1-201ENST00000437983 BAZ1AQ9NRL2 1556 aaPredicted RBP24.99■■□□□ 1.59
SMAD9-IT1-201ENST00000437983 OSCARQ8IYS5 282 aa24.96■■□□□ 1.59
SMAD9-IT1-201ENST00000437983 MRC2Q9UBG0 1479 aa24.96■■□□□ 1.59
SMAD9-IT1-201ENST00000437983 WDR62O43379 1518 aa24.91■■□□□ 1.58
SMAD9-IT1-201ENST00000437983 PEG3Q9GZU2 1588 aa24.91■■□□□ 1.58
SMAD9-IT1-201ENST00000437983 CADPSQ9ULU8 1353 aa24.85■■□□□ 1.57
SMAD9-IT1-201ENST00000437983 MROH2BQ7Z745 1585 aa24.75■■□□□ 1.55
SMAD9-IT1-201ENST00000437983 RIMBP3CA6NJZ7 1639 aa24.73■■□□□ 1.55
SMAD9-IT1-201ENST00000437983 RIMBP3BA6NNM3 1639 aa24.73■■□□□ 1.55
SMAD9-IT1-201ENST00000437983 RIMBP3Q9UFD9 1639 aa24.73■■□□□ 1.55
SMAD9-IT1-201ENST00000437983 CEP164Q9UPV0 1460 aa24.66■■□□□ 1.54
SMAD9-IT1-201ENST00000437983 SENP3Q9H4L4 574 aaPredicted RBP24.63■■□□□ 1.53
SMAD9-IT1-201ENST00000437983 FANCD2Q9BXW9 1451 aa24.58■■□□□ 1.52
SMAD9-IT1-201ENST00000437983 ARHGEF11O15085 1522 aa24.56■■□□□ 1.52
SMAD9-IT1-201ENST00000437983 TRHP20396 242 aaPredicted RBP24.5■■□□□ 1.51
SMAD9-IT1-201ENST00000437983 CYB5RLQ6IPT4 315 aa24.5■■□□□ 1.51
SMAD9-IT1-201ENST00000437983 URB2Q14146 1524 aaKnown RBP24.46■■□□□ 1.51
SMAD9-IT1-201ENST00000437983 WIZO95785 1651 aa24.39■■□□□ 1.49
SMAD9-IT1-201ENST00000437983 CFTRP13569 1480 aa24.37■■□□□ 1.49
SMAD9-IT1-201ENST00000437983 ZNF608Q9ULD9 1512 aaPredicted RBP24.35■■□□□ 1.49
SMAD9-IT1-201ENST00000437983 ARAP1Q96P48 1450 aa24.28■■□□□ 1.48
SMAD9-IT1-201ENST00000437983 PLPPR3Q6T4P5 718 aa24.27■■□□□ 1.48
SMAD9-IT1-201ENST00000437983 IFT140Q96RY7 1462 aa24.19■■□□□ 1.46
SMAD9-IT1-201ENST00000437983 EIF4G3O43432 1585 aaKnown RBP24.08■■□□□ 1.45
SMAD9-IT1-201ENST00000437983 CHD1O14646 1710 aa24.08■■□□□ 1.45
SMAD9-IT1-201ENST00000437983 RSF1Q96T23 1441 aaPredicted RBP24.04■■□□□ 1.44
SMAD9-IT1-201ENST00000437983 FBLN2P98095 1184 aa24.04■■□□□ 1.44
SMAD9-IT1-201ENST00000437983 AQRO60306 1485 aaKnown RBP eCLIP24.01■■□□□ 1.43
SMAD9-IT1-201ENST00000437983 TOPBP1Q92547 1522 aa24.01■■□□□ 1.43
SMAD9-IT1-201ENST00000437983 TOP2AP11388 1531 aaKnown RBP23.95■■□□□ 1.43
SMAD9-IT1-201ENST00000437983 PRDM2Q13029 1718 aa23.94■■□□□ 1.42
SMAD9-IT1-201ENST00000437983 TARBP1Q13395 1621 aaKnown RBP23.86■■□□□ 1.41
SMAD9-IT1-201ENST00000437983 DNMBPQ6XZF7 1577 aa23.8■■□□□ 1.4
SMAD9-IT1-201ENST00000437983 CLASP1Q7Z460 1538 aa23.79■■□□□ 1.4
SMAD9-IT1-201ENST00000437983 ABCC8Q09428 1581 aa23.79■■□□□ 1.4
SMAD9-IT1-201ENST00000437983 CCDC88BA6NC98 1476 aa23.76■■□□□ 1.39
SMAD9-IT1-201ENST00000437983 TDRD9Q8NDG6 1382 aaKnown RBP23.72■■□□□ 1.39
SMAD9-IT1-201ENST00000437983 POLA1P09884 1462 aaPredicted RBP23.71■■□□□ 1.39
SMAD9-IT1-201ENST00000437983 RAD54L2Q9Y4B4 1467 aa23.7■■□□□ 1.38
SMAD9-IT1-201ENST00000437983 SNAPC4Q5SXM2 1469 aa23.69■■□□□ 1.38
SMAD9-IT1-201ENST00000437983 CHMP7Q8WUX9 453 aaPredicted RBP23.67■■□□□ 1.38
SMAD9-IT1-201ENST00000437983 SYNJ1O43426 1573 aa23.64■■□□□ 1.37
SMAD9-IT1-201ENST00000437983 GAPVD1Q14C86 1478 aa23.62■■□□□ 1.37
SMAD9-IT1-201ENST00000437983 SOGA1O94964 1423 aa23.59■■□□□ 1.37
SMAD9-IT1-201ENST00000437983 ILDR1Q86SU0 546 aaPredicted RBP23.59■■□□□ 1.37
SMAD9-IT1-201ENST00000437983 MAGI1Q96QZ7 1491 aaPredicted RBP23.52■■□□□ 1.36
SMAD9-IT1-201ENST00000437983 SYNJ2O15056 1496 aa23.49■■□□□ 1.35
SMAD9-IT1-201ENST00000437983 GRIN2BQ13224 1484 aa23.46■■□□□ 1.35
SMAD9-IT1-201ENST00000437983 ERCC6L2Q5T890 1561 aa23.45■■□□□ 1.34
SMAD9-IT1-201ENST00000437983 FGD5Q6ZNL6 1462 aa23.43■■□□□ 1.34
SMAD9-IT1-201ENST00000437983 WDR97A6NE52 1622 aa23.42■■□□□ 1.34
SMAD9-IT1-201ENST00000437983 KDM4FA0A1W2PPD8 638 aa23.34■■□□□ 1.33
SMAD9-IT1-201ENST00000437983 KIF13AQ9H1H9 1805 aa23.33■■□□□ 1.32
SMAD9-IT1-201ENST00000437983 CUX1P39880 1505 aa23.28■■□□□ 1.32
SMAD9-IT1-201ENST00000437983 PBRM1Q86U86 1689 aa23.28■■□□□ 1.32
SMAD9-IT1-201ENST00000437983 CEP170Q5SW79 1584 aa23.24■■□□□ 1.31
SMAD9-IT1-201ENST00000437983 FAM69CQ0P6D2 419 aa23.18■■□□□ 1.3
SMAD9-IT1-201ENST00000437983 GRIN2AQ12879 1464 aa23.17■■□□□ 1.3
SMAD9-IT1-201ENST00000437983 ABCA5Q8WWZ7 1642 aa23.13■■□□□ 1.29
SMAD9-IT1-201ENST00000437983 NUP160Q12769 1436 aa23.13■■□□□ 1.29
SMAD9-IT1-201ENST00000437983 SHROOM2Q13796 1616 aa23.11■■□□□ 1.29
SMAD9-IT1-201ENST00000437983 ABCC10Q5T3U5 1492 aa23.1■■□□□ 1.29
SMAD9-IT1-201ENST00000437983 ABCA10Q8WWZ4 1543 aa23.08■■□□□ 1.29
SMAD9-IT1-201ENST00000437983 KDM6BO15054 1643 aa23.04■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 100.6 ms