RNA–Protein interactions for RNA: ENST00000416538.5

UBXN4-203, Transcript of UBX domain protein 4, humanhuman

TSL 5

Gene UBXN4, Length 1,255 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBXN4-203ENST00000416538 NISCHQ9Y2I1 1504 aa37.88■■■■□ 3.65
UBXN4-203ENST00000416538 CCDC180Q9P1Z9 1646 aa33.97■■■■□ 3.03
UBXN4-203ENST00000416538 ABCC9O60706 1549 aa33.58■■■□□ 2.97
UBXN4-203ENST00000416538 RB1CC1Q8TDY2 1594 aa32.08■■■□□ 2.73
UBXN4-203ENST00000416538 AEBP2Q6ZN18 517 aaPredicted RBP31.94■■■□□ 2.7
UBXN4-203ENST00000416538 NACADO15069 1562 aa31.93■■■□□ 2.7
UBXN4-203ENST00000416538 UNC13AQ9UPW8 1703 aa31.61■■■□□ 2.65
UBXN4-203ENST00000416538 DCAF8L2P0C7V8 631 aa31.59■■■□□ 2.65
UBXN4-203ENST00000416538 MYO15BQ96JP2 1530 aa31.58■■■□□ 2.65
UBXN4-203ENST00000416538 ZCCHC6Q5VYS8 1495 aaKnown RBP31.52■■■□□ 2.64
UBXN4-203ENST00000416538 DCAF1Q9Y4B6 1507 aa31.3■■■□□ 2.6
UBXN4-203ENST00000416538 BICRAQ9NZM4 1560 aa31.27■■■□□ 2.6
UBXN4-203ENST00000416538 DNAJC5BQ9UF47 199 aa31.22■■■□□ 2.59
UBXN4-203ENST00000416538 PABPN1Q86U42 306 aaKnown RBP eCLIP31.21■■■□□ 2.59
UBXN4-203ENST00000416538 SCRIBQ14160 1630 aa30.96■■■□□ 2.55
UBXN4-203ENST00000416538 SHROOM4Q9ULL8 1493 aa30.73■■■□□ 2.51
UBXN4-203ENST00000416538 CC2D2AQ9P2K1 1620 aa30.41■■■□□ 2.46
UBXN4-203ENST00000416538 EIF4G1Q04637 1599 aaKnown RBP30.41■■■□□ 2.46
UBXN4-203ENST00000416538 CHIC1Q5VXU3 224 aa30.38■■■□□ 2.45
UBXN4-203ENST00000416538 CECR2Q9BXF3 1484 aa30.19■■■□□ 2.42
UBXN4-203ENST00000416538 SMARCA4P51532 1647 aa29.56■■■□□ 2.32
UBXN4-203ENST00000416538 NCAPD3P42695 1498 aa29.43■■■□□ 2.3
UBXN4-203ENST00000416538 ATAD2BQ9ULI0 1458 aa29.43■■■□□ 2.3
UBXN4-203ENST00000416538 BAZ1AQ9NRL2 1556 aaPredicted RBP29.37■■■□□ 2.29
UBXN4-203ENST00000416538 SMARCA2P51531 1590 aa29.35■■■□□ 2.29
UBXN4-203ENST00000416538 HMGXB3Q12766 1538 aa29.33■■■□□ 2.29
UBXN4-203ENST00000416538 PEG3Q9GZU2 1588 aa29.26■■■□□ 2.27
UBXN4-203ENST00000416538 MROH2BQ7Z745 1585 aa29.24■■■□□ 2.27
UBXN4-203ENST00000416538 BAZ1BQ9UIG0 1483 aaKnown RBP29.13■■■□□ 2.25
UBXN4-203ENST00000416538 NESP48681 1621 aa28.98■■■□□ 2.23
UBXN4-203ENST00000416538 WIZO95785 1651 aa28.95■■■□□ 2.22
UBXN4-203ENST00000416538 ERCC6Q03468 1493 aa28.89■■■□□ 2.22
UBXN4-203ENST00000416538 LAMC3Q9Y6N6 1575 aa28.78■■■□□ 2.2
UBXN4-203ENST00000416538 CUX2O14529 1486 aa28.78■■■□□ 2.2
UBXN4-203ENST00000416538 THOC2Q8NI27 1593 aaKnown RBP28.72■■■□□ 2.19
UBXN4-203ENST00000416538 KIF21AQ7Z4S6 1674 aa28.72■■■□□ 2.19
UBXN4-203ENST00000416538 RSF1Q96T23 1441 aaPredicted RBP28.67■■■□□ 2.18
UBXN4-203ENST00000416538 TOP2AP11388 1531 aaKnown RBP28.55■■■□□ 2.16
UBXN4-203ENST00000416538 CADPSQ9ULU8 1353 aa28.51■■■□□ 2.16
UBXN4-203ENST00000416538 PDS5BQ9NTI5 1447 aa28.47■■■□□ 2.15
UBXN4-203ENST00000416538 DNAJC5Q9H3Z4 198 aa28.34■■■□□ 2.13
UBXN4-203ENST00000416538 MRC2Q9UBG0 1479 aa28.33■■■□□ 2.13
UBXN4-203ENST00000416538 CFTRP13569 1480 aa28.32■■■□□ 2.12
UBXN4-203ENST00000416538 WDR62O43379 1518 aa28.31■■■□□ 2.12
UBXN4-203ENST00000416538 PRDM2Q13029 1718 aa28.27■■■□□ 2.12
UBXN4-203ENST00000416538 CEP164Q9UPV0 1460 aa28.26■■■□□ 2.11
UBXN4-203ENST00000416538 FANCD2Q9BXW9 1451 aa28.25■■■□□ 2.11
UBXN4-203ENST00000416538 CCDC88BA6NC98 1476 aa28.16■■■□□ 2.1
UBXN4-203ENST00000416538 URB2Q14146 1524 aaKnown RBP28.08■■■□□ 2.08
UBXN4-203ENST00000416538 TOPBP1Q92547 1522 aa27.79■■■□□ 2.04
UBXN4-203ENST00000416538 DNMBPQ6XZF7 1577 aa27.73■■■□□ 2.03
UBXN4-203ENST00000416538 ZNF608Q9ULD9 1512 aaPredicted RBP27.67■■■□□ 2.02
UBXN4-203ENST00000416538 IFT140Q96RY7 1462 aa27.65■■■□□ 2.02
UBXN4-203ENST00000416538 ABCC8Q09428 1581 aa27.61■■■□□ 2.01
UBXN4-203ENST00000416538 EIF4G3O43432 1585 aaKnown RBP27.6■■■□□ 2.01
UBXN4-203ENST00000416538 TARBP1Q13395 1621 aaKnown RBP27.59■■■□□ 2.01
UBXN4-203ENST00000416538 POLA1P09884 1462 aaPredicted RBP27.53■■■□□ 2
UBXN4-203ENST00000416538 SUPT5HO00267 1087 aaKnown RBP27.47■■□□□ 1.99
UBXN4-203ENST00000416538 CUX1P39880 1505 aa27.46■■□□□ 1.99
UBXN4-203ENST00000416538 RAD54L2Q9Y4B4 1467 aa27.41■■□□□ 1.98
UBXN4-203ENST00000416538 FGD5Q6ZNL6 1462 aa27.4■■□□□ 1.98
UBXN4-203ENST00000416538 CHD1O14646 1710 aa27.39■■□□□ 1.98
UBXN4-203ENST00000416538 AQRO60306 1485 aaKnown RBP eCLIP27.38■■□□□ 1.972e-8■■■□□ 15.9
UBXN4-203ENST00000416538 WDR97A6NE52 1622 aa27.35■■□□□ 1.97
UBXN4-203ENST00000416538 OSCARQ8IYS5 282 aa27.35■■□□□ 1.97
UBXN4-203ENST00000416538 SOGA1O94964 1423 aa27.29■■□□□ 1.96
UBXN4-203ENST00000416538 SENP3Q9H4L4 574 aaPredicted RBP27.26■■□□□ 1.95
UBXN4-203ENST00000416538 RIMBP3CA6NJZ7 1639 aa27.24■■□□□ 1.95
UBXN4-203ENST00000416538 RIMBP3BA6NNM3 1639 aa27.24■■□□□ 1.95
UBXN4-203ENST00000416538 RIMBP3Q9UFD9 1639 aa27.24■■□□□ 1.95
UBXN4-203ENST00000416538 TDRD9Q8NDG6 1382 aaKnown RBP27.22■■□□□ 1.95
UBXN4-203ENST00000416538 TRIM41Q8WV44 630 aa27.21■■□□□ 1.95
UBXN4-203ENST00000416538 PBRM1Q86U86 1689 aa27.17■■□□□ 1.94
UBXN4-203ENST00000416538 SNAPC4Q5SXM2 1469 aa27.16■■□□□ 1.94
UBXN4-203ENST00000416538 BIVM-ERCC5R4GMW8 1640 aa27.14■■□□□ 1.94
UBXN4-203ENST00000416538 ARHGEF11O15085 1522 aa27.14■■□□□ 1.94
UBXN4-203ENST00000416538 ABCA5Q8WWZ7 1642 aa27.12■■□□□ 1.93
UBXN4-203ENST00000416538 SYNJ1O43426 1573 aa27.12■■□□□ 1.93
UBXN4-203ENST00000416538 TOP2BQ02880 1626 aa27.08■■□□□ 1.93
UBXN4-203ENST00000416538 ABCA10Q8WWZ4 1543 aa27.08■■□□□ 1.93
UBXN4-203ENST00000416538 GRIN2BQ13224 1484 aa27.06■■□□□ 1.92
UBXN4-203ENST00000416538 MAGI1Q96QZ7 1491 aaPredicted RBP27.06■■□□□ 1.92
UBXN4-203ENST00000416538 CLASP1Q7Z460 1538 aa27.01■■□□□ 1.91
UBXN4-203ENST00000416538 GAPVD1Q14C86 1478 aa27.01■■□□□ 1.91
UBXN4-203ENST00000416538 WRNQ14191 1432 aaPredicted RBP eCLIP27■■□□□ 1.91
UBXN4-203ENST00000416538 FBLN2P98095 1184 aa26.99■■□□□ 1.91
UBXN4-203ENST00000416538 SYNJ2O15056 1496 aa26.96■■□□□ 1.91
UBXN4-203ENST00000416538 PHF23Q9BUL5 403 aaPredicted RBP26.94■■□□□ 1.9
UBXN4-203ENST00000416538 ARAP1Q96P48 1450 aa26.92■■□□□ 1.9
UBXN4-203ENST00000416538 ADAMTS12P58397 1594 aa26.89■■□□□ 1.9
UBXN4-203ENST00000416538 CHMP7Q8WUX9 453 aaPredicted RBP26.83■■□□□ 1.89
UBXN4-203ENST00000416538 GRIN2AQ12879 1464 aa26.77■■□□□ 1.88
UBXN4-203ENST00000416538 CEP170Q5SW79 1584 aa26.75■■□□□ 1.87
UBXN4-203ENST00000416538 ERICH3Q5RHP9 1530 aa26.74■■□□□ 1.87
UBXN4-203ENST00000416538 CYB5RLQ6IPT4 315 aa26.73■■□□□ 1.87
UBXN4-203ENST00000416538 NUP160Q12769 1436 aa26.67■■□□□ 1.86
UBXN4-203ENST00000416538 FHAD1B1AJZ9 1412 aa26.66■■□□□ 1.86
UBXN4-203ENST00000416538 ERCC6L2Q5T890 1561 aa26.65■■□□□ 1.86
UBXN4-203ENST00000416538 SHROOM2Q13796 1616 aa26.62■■□□□ 1.85
UBXN4-203ENST00000416538 RUSC2Q8N2Y8 1516 aa26.52■■□□□ 1.84
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms