RNA–Protein interactions for RNA: ENST00000366983.5

ATF3-204, Transcript of activating transcription factor 3, humanhuman

TSL 1 (best) BASIC

Gene ATF3, Length 858 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATF3-204ENST00000366983 NISCHQ9Y2I1 1504 aa20.74■□□□□ 0.91
ATF3-204ENST00000366983 CCDC180Q9P1Z9 1646 aa18.72■□□□□ 0.59
ATF3-204ENST00000366983 ABCC9O60706 1549 aa18.44■□□□□ 0.54
ATF3-204ENST00000366983 RB1CC1Q8TDY2 1594 aa17.72■□□□□ 0.43
ATF3-204ENST00000366983 NACADO15069 1562 aa17.62■□□□□ 0.41
ATF3-204ENST00000366983 AEBP2Q6ZN18 517 aaPredicted RBP17.6■□□□□ 0.41
ATF3-204ENST00000366983 MYO15BQ96JP2 1530 aa17.47■□□□□ 0.39
ATF3-204ENST00000366983 UNC13AQ9UPW8 1703 aa17.3■□□□□ 0.36
ATF3-204ENST00000366983 ZCCHC6Q5VYS8 1495 aaKnown RBP17.25■□□□□ 0.35
ATF3-204ENST00000366983 DCAF1Q9Y4B6 1507 aa17.25■□□□□ 0.35
ATF3-204ENST00000366983 DCAF8L2P0C7V8 631 aa17.19■□□□□ 0.34
ATF3-204ENST00000366983 BICRAQ9NZM4 1560 aa17.15■□□□□ 0.34
ATF3-204ENST00000366983 SHROOM4Q9ULL8 1493 aa17.12■□□□□ 0.33
ATF3-204ENST00000366983 DNAJC5BQ9UF47 199 aa17.11■□□□□ 0.33
ATF3-204ENST00000366983 PABPN1Q86U42 306 aaKnown RBP eCLIP17.06■□□□□ 0.32
ATF3-204ENST00000366983 SCRIBQ14160 1630 aa16.92■□□□□ 0.3
ATF3-204ENST00000366983 EIF4G1Q04637 1599 aaKnown RBP16.75■□□□□ 0.27
ATF3-204ENST00000366983 CC2D2AQ9P2K1 1620 aa16.74■□□□□ 0.27
ATF3-204ENST00000366983 CECR2Q9BXF3 1484 aa16.66■□□□□ 0.26
ATF3-204ENST00000366983 CHIC1Q5VXU3 224 aa16.52■□□□□ 0.24
ATF3-204ENST00000366983 NCAPD3P42695 1498 aa16.22■□□□□ 0.19
ATF3-204ENST00000366983 SMARCA4P51532 1647 aa16.2■□□□□ 0.18
ATF3-204ENST00000366983 HMGXB3Q12766 1538 aa16.19■□□□□ 0.18
ATF3-204ENST00000366983 SMARCA2P51531 1590 aa16.18■□□□□ 0.18
ATF3-204ENST00000366983 BAZ1AQ9NRL2 1556 aaPredicted RBP16.15■□□□□ 0.18
ATF3-204ENST00000366983 ATAD2BQ9ULI0 1458 aa16.15■□□□□ 0.18
ATF3-204ENST00000366983 PEG3Q9GZU2 1588 aa16.11■□□□□ 0.17
ATF3-204ENST00000366983 CUX2O14529 1486 aa16.02■□□□□ 0.15
ATF3-204ENST00000366983 BAZ1BQ9UIG0 1483 aaKnown RBP16.02■□□□□ 0.15
ATF3-204ENST00000366983 ERCC6Q03468 1493 aa15.97■□□□□ 0.15
ATF3-204ENST00000366983 MROH2BQ7Z745 1585 aa15.93■□□□□ 0.14
ATF3-204ENST00000366983 LAMC3Q9Y6N6 1575 aa15.9■□□□□ 0.14
ATF3-204ENST00000366983 NESP48681 1621 aa15.85■□□□□ 0.13
ATF3-204ENST00000366983 THOC2Q8NI27 1593 aaKnown RBP15.83■□□□□ 0.12
ATF3-204ENST00000366983 DNAJC5Q9H3Z4 198 aa15.76■□□□□ 0.11
ATF3-204ENST00000366983 WIZO95785 1651 aa15.75■□□□□ 0.11
ATF3-204ENST00000366983 KIF21AQ7Z4S6 1674 aa15.74■□□□□ 0.11
ATF3-204ENST00000366983 PDS5BQ9NTI5 1447 aa15.74■□□□□ 0.11
ATF3-204ENST00000366983 CADPSQ9ULU8 1353 aa15.68■□□□□ 0.1
ATF3-204ENST00000366983 TOP2AP11388 1531 aaKnown RBP15.64■□□□□ 0.09
ATF3-204ENST00000366983 WDR62O43379 1518 aa15.63■□□□□ 0.09
ATF3-204ENST00000366983 RSF1Q96T23 1441 aaPredicted RBP15.62■□□□□ 0.09
ATF3-204ENST00000366983 MRC2Q9UBG0 1479 aa15.62■□□□□ 0.09
ATF3-204ENST00000366983 CFTRP13569 1480 aa15.57■□□□□ 0.08
ATF3-204ENST00000366983 CEP164Q9UPV0 1460 aa15.57■□□□□ 0.08
ATF3-204ENST00000366983 FANCD2Q9BXW9 1451 aa15.52■□□□□ 0.08
ATF3-204ENST00000366983 PRDM2Q13029 1718 aa15.52■□□□□ 0.08
ATF3-204ENST00000366983 URB2Q14146 1524 aaKnown RBP15.38■□□□□ 0.05
ATF3-204ENST00000366983 CCDC88BA6NC98 1476 aa15.35■□□□□ 0.05
ATF3-204ENST00000366983 ABCC8Q09428 1581 aa15.28■□□□□ 0.04
ATF3-204ENST00000366983 IFT140Q96RY7 1462 aa15.27■□□□□ 0.03
ATF3-204ENST00000366983 DNMBPQ6XZF7 1577 aa15.24■□□□□ 0.03
ATF3-204ENST00000366983 TOPBP1Q92547 1522 aa15.24■□□□□ 0.03
ATF3-204ENST00000366983 EIF4G3O43432 1585 aaKnown RBP15.18■□□□□ 0.02
ATF3-204ENST00000366983 ZNF608Q9ULD9 1512 aaPredicted RBP15.14■□□□□ 0.01
ATF3-204ENST00000366983 TARBP1Q13395 1621 aaKnown RBP15.14■□□□□ 0.01
ATF3-204ENST00000366983 WDR97A6NE52 1622 aa15.13■□□□□ 0.01
ATF3-204ENST00000366983 OSCARQ8IYS5 282 aa15.12■□□□□ 0.01
ATF3-204ENST00000366983 POLA1P09884 1462 aaPredicted RBP15.1■□□□□ 0.01
ATF3-204ENST00000366983 SENP3Q9H4L4 574 aaPredicted RBP15.05■□□□□ -0
ATF3-204ENST00000366983 RIMBP3CA6NJZ7 1639 aa15.03■□□□□ -0
ATF3-204ENST00000366983 RIMBP3BA6NNM3 1639 aa15.03■□□□□ -0
ATF3-204ENST00000366983 RIMBP3Q9UFD9 1639 aa15.03■□□□□ -0
ATF3-204ENST00000366983 CHD1O14646 1710 aa15.02□□□□□ -0.01
ATF3-204ENST00000366983 TRIM41Q8WV44 630 aa15□□□□□ -0.01
ATF3-204ENST00000366983 FGD5Q6ZNL6 1462 aa15□□□□□ -0.01
ATF3-204ENST00000366983 ARHGEF11O15085 1522 aa14.99□□□□□ -0.01
ATF3-204ENST00000366983 CUX1P39880 1505 aa14.99□□□□□ -0.01
ATF3-204ENST00000366983 AQRO60306 1485 aaKnown RBP eCLIP14.98□□□□□ -0.018e-7■□□□□ 9.1
ATF3-204ENST00000366983 SOGA1O94964 1423 aa14.96□□□□□ -0.01
ATF3-204ENST00000366983 RAD54L2Q9Y4B4 1467 aa14.95□□□□□ -0.02
ATF3-204ENST00000366983 MAGI1Q96QZ7 1491 aaPredicted RBP14.94□□□□□ -0.02
ATF3-204ENST00000366983 SNAPC4Q5SXM2 1469 aa14.91□□□□□ -0.02
ATF3-204ENST00000366983 GRIN2BQ13224 1484 aa14.9□□□□□ -0.02
ATF3-204ENST00000366983 PBRM1Q86U86 1689 aa14.9□□□□□ -0.02
ATF3-204ENST00000366983 SYNJ1O43426 1573 aa14.89□□□□□ -0.03
ATF3-204ENST00000366983 ABCA5Q8WWZ7 1642 aa14.88□□□□□ -0.03
ATF3-204ENST00000366983 CLASP1Q7Z460 1538 aa14.88□□□□□ -0.03
ATF3-204ENST00000366983 ABCA10Q8WWZ4 1543 aa14.87□□□□□ -0.03
ATF3-204ENST00000366983 TDRD9Q8NDG6 1382 aaKnown RBP14.87□□□□□ -0.03
ATF3-204ENST00000366983 SYNJ2O15056 1496 aa14.86□□□□□ -0.03
ATF3-204ENST00000366983 BIVM-ERCC5R4GMW8 1640 aa14.85□□□□□ -0.03
ATF3-204ENST00000366983 PHF23Q9BUL5 403 aaPredicted RBP14.85□□□□□ -0.03
ATF3-204ENST00000366983 TOP2BQ02880 1626 aa14.83□□□□□ -0.04
ATF3-204ENST00000366983 GAPVD1Q14C86 1478 aa14.82□□□□□ -0.04
ATF3-204ENST00000366983 ARAP1Q96P48 1450 aa14.82□□□□□ -0.04
ATF3-204ENST00000366983 WRNQ14191 1432 aaPredicted RBP eCLIP14.78□□□□□ -0.04
ATF3-204ENST00000366983 SUPT5HO00267 1087 aaKnown RBP14.78□□□□□ -0.04
ATF3-204ENST00000366983 FBLN2P98095 1184 aa14.78□□□□□ -0.04
ATF3-204ENST00000366983 ADAMTS12P58397 1594 aa14.77□□□□□ -0.05
ATF3-204ENST00000366983 CHMP7Q8WUX9 453 aaPredicted RBP14.75□□□□□ -0.05
ATF3-204ENST00000366983 GRIN2AQ12879 1464 aa14.72□□□□□ -0.05
ATF3-204ENST00000366983 ERICH3Q5RHP9 1530 aa14.71□□□□□ -0.05
ATF3-204ENST00000366983 CYB5RLQ6IPT4 315 aa14.69□□□□□ -0.06
ATF3-204ENST00000366983 NUP160Q12769 1436 aa14.67□□□□□ -0.06
ATF3-204ENST00000366983 FHAD1B1AJZ9 1412 aa14.66□□□□□ -0.06
ATF3-204ENST00000366983 CEP170Q5SW79 1584 aa14.65□□□□□ -0.06
ATF3-204ENST00000366983 SHROOM2Q13796 1616 aa14.65□□□□□ -0.06
ATF3-204ENST00000366983 RUSC2Q8N2Y8 1516 aa14.56□□□□□ -0.08
ATF3-204ENST00000366983 ERCC6L2Q5T890 1561 aa14.55□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms