RNA–Protein interactions for RNA: ENST00000366216.6

CSNK1E-202, Transcript of casein kinase 1 epsilon, humanhuman

TSL 2

Gene CSNK1E, Length 1,005 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSNK1E-202ENST00000366216 NISCHQ9Y2I1 1504 aa27.77■■■□□ 2.04
CSNK1E-202ENST00000366216 ABCC9O60706 1549 aa25.76■■□□□ 1.71
CSNK1E-202ENST00000366216 CCDC180Q9P1Z9 1646 aa25.34■■□□□ 1.65
CSNK1E-202ENST00000366216 DNAJC5BQ9UF47 199 aa24.64■■□□□ 1.54
CSNK1E-202ENST00000366216 RB1CC1Q8TDY2 1594 aa24.33■■□□□ 1.49
CSNK1E-202ENST00000366216 NACADO15069 1562 aa23.99■■□□□ 1.43
CSNK1E-202ENST00000366216 UNC13AQ9UPW8 1703 aa23.99■■□□□ 1.43
CSNK1E-202ENST00000366216 PABPN1Q86U42 306 aaKnown RBP eCLIP23.81■■□□□ 1.4
CSNK1E-202ENST00000366216 BICRAQ9NZM4 1560 aa23.65■■□□□ 1.38
CSNK1E-202ENST00000366216 DCAF8L2P0C7V8 631 aa23.59■■□□□ 1.37
CSNK1E-202ENST00000366216 MYO15BQ96JP2 1530 aa23.43■■□□□ 1.34
CSNK1E-202ENST00000366216 CC2D2AQ9P2K1 1620 aa23.33■■□□□ 1.32
CSNK1E-202ENST00000366216 CECR2Q9BXF3 1484 aa23.26■■□□□ 1.31
CSNK1E-202ENST00000366216 SHROOM4Q9ULL8 1493 aa23.23■■□□□ 1.31
CSNK1E-202ENST00000366216 EIF4G1Q04637 1599 aaKnown RBP23.1■■□□□ 1.29
CSNK1E-202ENST00000366216 DNAJC5Q9H3Z4 198 aa23.09■■□□□ 1.29
CSNK1E-202ENST00000366216 SCRIBQ14160 1630 aa22.97■■□□□ 1.27
CSNK1E-202ENST00000366216 DCAF1Q9Y4B6 1507 aa22.92■■□□□ 1.26
CSNK1E-202ENST00000366216 ZCCHC6Q5VYS8 1495 aaKnown RBP22.92■■□□□ 1.26
CSNK1E-202ENST00000366216 CHIC1Q5VXU3 224 aa22.85■■□□□ 1.25
CSNK1E-202ENST00000366216 AEBP2Q6ZN18 517 aaPredicted RBP22.75■■□□□ 1.23
CSNK1E-202ENST00000366216 CUX2O14529 1486 aa22.48■■□□□ 1.19
CSNK1E-202ENST00000366216 ERCC6Q03468 1493 aa22.29■■□□□ 1.16
CSNK1E-202ENST00000366216 NCAPD3P42695 1498 aa22.09■■□□□ 1.13
CSNK1E-202ENST00000366216 NESP48681 1621 aa21.97■■□□□ 1.11
CSNK1E-202ENST00000366216 THOC2Q8NI27 1593 aaKnown RBP21.96■■□□□ 1.11
CSNK1E-202ENST00000366216 ATAD2BQ9ULI0 1458 aa21.94■■□□□ 1.1
CSNK1E-202ENST00000366216 HMGXB3Q12766 1538 aa21.94■■□□□ 1.1
CSNK1E-202ENST00000366216 SMARCA2P51531 1590 aa21.91■■□□□ 1.1
CSNK1E-202ENST00000366216 SMARCA4P51532 1647 aa21.86■■□□□ 1.09
CSNK1E-202ENST00000366216 KIF21AQ7Z4S6 1674 aa21.84■■□□□ 1.09
CSNK1E-202ENST00000366216 TRIM41Q8WV44 630 aa21.81■■□□□ 1.08
CSNK1E-202ENST00000366216 LAMC3Q9Y6N6 1575 aa21.78■■□□□ 1.08
CSNK1E-202ENST00000366216 BAZ1BQ9UIG0 1483 aaKnown RBP21.72■■□□□ 1.07
CSNK1E-202ENST00000366216 PEG3Q9GZU2 1588 aa21.64■■□□□ 1.05
CSNK1E-202ENST00000366216 BAZ1AQ9NRL2 1556 aaPredicted RBP21.62■■□□□ 1.05
CSNK1E-202ENST00000366216 PDS5BQ9NTI5 1447 aa21.58■■□□□ 1.05
CSNK1E-202ENST00000366216 WDR62O43379 1518 aa21.47■■□□□ 1.03
CSNK1E-202ENST00000366216 MRC2Q9UBG0 1479 aa21.46■■□□□ 1.03
CSNK1E-202ENST00000366216 MROH2BQ7Z745 1585 aa21.46■■□□□ 1.03
CSNK1E-202ENST00000366216 CADPSQ9ULU8 1353 aa21.36■■□□□ 1.01
CSNK1E-202ENST00000366216 OSCARQ8IYS5 282 aa21.27■■□□□ 1
CSNK1E-202ENST00000366216 CEP164Q9UPV0 1460 aa21.26■□□□□ 0.99
CSNK1E-202ENST00000366216 RIMBP3CA6NJZ7 1639 aa21.22■□□□□ 0.99
CSNK1E-202ENST00000366216 RIMBP3BA6NNM3 1639 aa21.22■□□□□ 0.99
CSNK1E-202ENST00000366216 RIMBP3Q9UFD9 1639 aa21.22■□□□□ 0.99
CSNK1E-202ENST00000366216 WIZO95785 1651 aa21.19■□□□□ 0.98
CSNK1E-202ENST00000366216 FANCD2Q9BXW9 1451 aa21.16■□□□□ 0.98
CSNK1E-202ENST00000366216 PRDM2Q13029 1718 aa21.07■□□□□ 0.96
CSNK1E-202ENST00000366216 URB2Q14146 1524 aaKnown RBP21.04■□□□□ 0.96
CSNK1E-202ENST00000366216 CFTRP13569 1480 aa21.02■□□□□ 0.96
CSNK1E-202ENST00000366216 ARHGEF11O15085 1522 aa21.02■□□□□ 0.96
CSNK1E-202ENST00000366216 CHD1O14646 1710 aa20.88■□□□□ 0.93
CSNK1E-202ENST00000366216 ZNF608Q9ULD9 1512 aaPredicted RBP20.87■□□□□ 0.93
CSNK1E-202ENST00000366216 IFT140Q96RY7 1462 aa20.83■□□□□ 0.93
CSNK1E-202ENST00000366216 EIF4G3O43432 1585 aaKnown RBP20.82■□□□□ 0.92
CSNK1E-202ENST00000366216 TOP2AP11388 1531 aaKnown RBP20.82■□□□□ 0.92
CSNK1E-202ENST00000366216 CYB5RLQ6IPT4 315 aa20.81■□□□□ 0.92
CSNK1E-202ENST00000366216 RSF1Q96T23 1441 aaPredicted RBP20.8■□□□□ 0.92
CSNK1E-202ENST00000366216 TRHP20396 242 aaPredicted RBP20.77■□□□□ 0.92
CSNK1E-202ENST00000366216 ARAP1Q96P48 1450 aa20.75■□□□□ 0.91
CSNK1E-202ENST00000366216 TOPBP1Q92547 1522 aa20.72■□□□□ 0.91
CSNK1E-202ENST00000366216 TARBP1Q13395 1621 aaKnown RBP20.65■□□□□ 0.9
CSNK1E-202ENST00000366216 ABCC8Q09428 1581 aa20.63■□□□□ 0.89
CSNK1E-202ENST00000366216 DNMBPQ6XZF7 1577 aa20.62■□□□□ 0.89
CSNK1E-202ENST00000366216 CCDC88BA6NC98 1476 aa20.61■□□□□ 0.89
CSNK1E-202ENST00000366216 AQRO60306 1485 aaKnown RBP eCLIP20.57■□□□□ 0.883e-8■■■■□ 25.6
CSNK1E-202ENST00000366216 FBLN2P98095 1184 aa20.52■□□□□ 0.88
CSNK1E-202ENST00000366216 CLASP1Q7Z460 1538 aa20.49■□□□□ 0.87
CSNK1E-202ENST00000366216 POLA1P09884 1462 aaPredicted RBP20.44■□□□□ 0.86
CSNK1E-202ENST00000366216 SYNJ1O43426 1573 aa20.42■□□□□ 0.86
CSNK1E-202ENST00000366216 RAD54L2Q9Y4B4 1467 aa20.41■□□□□ 0.86
CSNK1E-202ENST00000366216 WDR97A6NE52 1622 aa20.4■□□□□ 0.86
CSNK1E-202ENST00000366216 SNAPC4Q5SXM2 1469 aa20.37■□□□□ 0.85
CSNK1E-202ENST00000366216 TDRD9Q8NDG6 1382 aaKnown RBP20.35■□□□□ 0.85
CSNK1E-202ENST00000366216 MAGI1Q96QZ7 1491 aaPredicted RBP20.31■□□□□ 0.84
CSNK1E-202ENST00000366216 SOGA1O94964 1423 aa20.3■□□□□ 0.84
CSNK1E-202ENST00000366216 PBRM1Q86U86 1689 aa20.3■□□□□ 0.84
CSNK1E-202ENST00000366216 CHMP7Q8WUX9 453 aaPredicted RBP20.27■□□□□ 0.84
CSNK1E-202ENST00000366216 GAPVD1Q14C86 1478 aa20.25■□□□□ 0.83
CSNK1E-202ENST00000366216 SYNJ2O15056 1496 aa20.24■□□□□ 0.83
CSNK1E-202ENST00000366216 FGD5Q6ZNL6 1462 aa20.24■□□□□ 0.83
CSNK1E-202ENST00000366216 GRIN2BQ13224 1484 aa20.23■□□□□ 0.83
CSNK1E-202ENST00000366216 KIF13AQ9H1H9 1805 aa20.21■□□□□ 0.83
CSNK1E-202ENST00000366216 CUX1P39880 1505 aa20.17■□□□□ 0.82
CSNK1E-202ENST00000366216 ERCC6L2Q5T890 1561 aa20.12■□□□□ 0.81
CSNK1E-202ENST00000366216 ABCA5Q8WWZ7 1642 aa20.08■□□□□ 0.8
CSNK1E-202ENST00000366216 PHF23Q9BUL5 403 aaPredicted RBP20.07■□□□□ 0.8
CSNK1E-202ENST00000366216 CEP170Q5SW79 1584 aa20.04■□□□□ 0.8
CSNK1E-202ENST00000366216 SHROOM2Q13796 1616 aa20.02■□□□□ 0.79
CSNK1E-202ENST00000366216 GRIN2AQ12879 1464 aa19.99■□□□□ 0.79
CSNK1E-202ENST00000366216 ABCA10Q8WWZ4 1543 aa19.97■□□□□ 0.79
CSNK1E-202ENST00000366216 ADAMTS12P58397 1594 aa19.95■□□□□ 0.78
CSNK1E-202ENST00000366216 NUP160Q12769 1436 aa19.93■□□□□ 0.78
CSNK1E-202ENST00000366216 TSPOAP1O95153 1857 aa19.86■□□□□ 0.77
CSNK1E-202ENST00000366216 DIP2BQ9P265 1576 aa19.82■□□□□ 0.76
CSNK1E-202ENST00000366216 KDM6BO15054 1643 aa19.81■□□□□ 0.76
CSNK1E-202ENST00000366216 ILDR1Q86SU0 546 aaPredicted RBP19.81■□□□□ 0.76
CSNK1E-202ENST00000366216 ABCC10Q5T3U5 1492 aa19.8■□□□□ 0.76
CSNK1E-202ENST00000366216 MAPKBP1O60336 1514 aa19.78■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 149.7 ms