RNA–Protein interactions for RNA: ENST00000234179.6

PRKD3-201, Transcript of protein kinase D3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PRKD3, Length 5,900 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKD3-201ENST00000234179 NISCHQ9Y2I1 1504 aa5.76□□□□□ -1.49
PRKD3-201ENST00000234179 AEBP2Q6ZN18 517 aaPredicted RBP5.67□□□□□ -1.5
PRKD3-201ENST00000234179 CCDC180Q9P1Z9 1646 aa5.28□□□□□ -1.56
PRKD3-201ENST00000234179 ABCC9O60706 1549 aa5.22□□□□□ -1.57
PRKD3-201ENST00000234179 CHIC1Q5VXU3 224 aa5.21□□□□□ -1.58
PRKD3-201ENST00000234179 RB1CC1Q8TDY2 1594 aa5.06□□□□□ -1.6
PRKD3-201ENST00000234179 NACADO15069 1562 aa5.02□□□□□ -1.61
PRKD3-201ENST00000234179 MYO15BQ96JP2 1530 aa4.99□□□□□ -1.61
PRKD3-201ENST00000234179 SHROOM4Q9ULL8 1493 aa4.98□□□□□ -1.61
PRKD3-201ENST00000234179 DNAJC5BQ9UF47 199 aa4.89□□□□□ -1.63
PRKD3-201ENST00000234179 PHF23Q9BUL5 403 aaPredicted RBP4.87□□□□□ -1.63
PRKD3-201ENST00000234179 DCAF1Q9Y4B6 1507 aa4.86□□□□□ -1.63
PRKD3-201ENST00000234179 BICRAQ9NZM4 1560 aa4.8□□□□□ -1.64
PRKD3-201ENST00000234179 PABPN1Q86U42 306 aaKnown RBP eCLIP4.8□□□□□ -1.64
PRKD3-201ENST00000234179 DCAF8L2P0C7V8 631 aa4.79□□□□□ -1.64
PRKD3-201ENST00000234179 CECR2Q9BXF3 1484 aa4.78□□□□□ -1.64
PRKD3-201ENST00000234179 ZCCHC6Q5VYS8 1495 aaKnown RBP4.76□□□□□ -1.65
PRKD3-201ENST00000234179 UNC13AQ9UPW8 1703 aa4.76□□□□□ -1.65
PRKD3-201ENST00000234179 EIF4G1Q04637 1599 aaKnown RBP4.73□□□□□ -1.65
PRKD3-201ENST00000234179 CC2D2AQ9P2K1 1620 aa4.73□□□□□ -1.65
PRKD3-201ENST00000234179 SENP3Q9H4L4 574 aaPredicted RBP4.72□□□□□ -1.65
PRKD3-201ENST00000234179 DNAJC5Q9H3Z4 198 aa4.71□□□□□ -1.66
PRKD3-201ENST00000234179 CUX2O14529 1486 aa4.69□□□□□ -1.66
PRKD3-201ENST00000234179 SCRIBQ14160 1630 aa4.68□□□□□ -1.66
PRKD3-201ENST00000234179 NCAPD3P42695 1498 aa4.62□□□□□ -1.67
PRKD3-201ENST00000234179 ERCC6Q03468 1493 aa4.6□□□□□ -1.67
PRKD3-201ENST00000234179 SMARCA2P51531 1590 aa4.59□□□□□ -1.67
PRKD3-201ENST00000234179 HMGXB3Q12766 1538 aa4.59□□□□□ -1.67
PRKD3-201ENST00000234179 ATAD2BQ9ULI0 1458 aa4.54□□□□□ -1.68
PRKD3-201ENST00000234179 PDS5BQ9NTI5 1447 aa4.53□□□□□ -1.68
PRKD3-201ENST00000234179 BAZ1AQ9NRL2 1556 aaPredicted RBP4.53□□□□□ -1.68
PRKD3-201ENST00000234179 LAMC3Q9Y6N6 1575 aa4.53□□□□□ -1.68
PRKD3-201ENST00000234179 PEG3Q9GZU2 1588 aa4.51□□□□□ -1.69
PRKD3-201ENST00000234179 BAZ1BQ9UIG0 1483 aaKnown RBP4.51□□□□□ -1.69
PRKD3-201ENST00000234179 SMARCA4P51532 1647 aa4.5□□□□□ -1.69
PRKD3-201ENST00000234179 THOC2Q8NI27 1593 aaKnown RBP4.47□□□□□ -1.69
PRKD3-201ENST00000234179 MRC2Q9UBG0 1479 aa4.46□□□□□ -1.7
PRKD3-201ENST00000234179 CADPSQ9ULU8 1353 aa4.46□□□□□ -1.7
PRKD3-201ENST00000234179 WDR62O43379 1518 aa4.43□□□□□ -1.7
PRKD3-201ENST00000234179 CEP164Q9UPV0 1460 aa4.42□□□□□ -1.7
PRKD3-201ENST00000234179 NESP48681 1621 aa4.42□□□□□ -1.7
PRKD3-201ENST00000234179 OSCARQ8IYS5 282 aa4.41□□□□□ -1.7
PRKD3-201ENST00000234179 ABCC8Q09428 1581 aa4.39□□□□□ -1.71
PRKD3-201ENST00000234179 CFTRP13569 1480 aa4.38□□□□□ -1.71
PRKD3-201ENST00000234179 KIF21AQ7Z4S6 1674 aa4.37□□□□□ -1.71
PRKD3-201ENST00000234179 FANCD2Q9BXW9 1451 aa4.37□□□□□ -1.71
PRKD3-201ENST00000234179 TRIM41Q8WV44 630 aa4.37□□□□□ -1.71
PRKD3-201ENST00000234179 MROH2BQ7Z745 1585 aa4.37□□□□□ -1.71
PRKD3-201ENST00000234179 IFT140Q96RY7 1462 aa4.37□□□□□ -1.71
PRKD3-201ENST00000234179 RSF1Q96T23 1441 aaPredicted RBP4.34□□□□□ -1.72
PRKD3-201ENST00000234179 TOP2AP11388 1531 aaKnown RBP4.34□□□□□ -1.72
PRKD3-201ENST00000234179 WDR97A6NE52 1622 aa4.33□□□□□ -1.72
PRKD3-201ENST00000234179 PRDM2Q13029 1718 aa4.3□□□□□ -1.72
PRKD3-201ENST00000234179 URB2Q14146 1524 aaKnown RBP4.3□□□□□ -1.72
PRKD3-201ENST00000234179 ARHGEF11O15085 1522 aa4.29□□□□□ -1.72
PRKD3-201ENST00000234179 DNMBPQ6XZF7 1577 aa4.29□□□□□ -1.72
PRKD3-201ENST00000234179 RIMBP3CA6NJZ7 1639 aa4.28□□□□□ -1.72
PRKD3-201ENST00000234179 RIMBP3BA6NNM3 1639 aa4.28□□□□□ -1.72
PRKD3-201ENST00000234179 RIMBP3Q9UFD9 1639 aa4.28□□□□□ -1.72
PRKD3-201ENST00000234179 TOPBP1Q92547 1522 aa4.27□□□□□ -1.73
PRKD3-201ENST00000234179 WIZO95785 1651 aa4.27□□□□□ -1.73
PRKD3-201ENST00000234179 MSH5O43196 834 aa4.27□□□□□ -1.73
PRKD3-201ENST00000234179 MAGI1Q96QZ7 1491 aaPredicted RBP4.26□□□□□ -1.73
PRKD3-201ENST00000234179 SYNJ1O43426 1573 aa4.25□□□□□ -1.73
PRKD3-201ENST00000234179 EIF4G3O43432 1585 aaKnown RBP4.24□□□□□ -1.73
PRKD3-201ENST00000234179 TRHP20396 242 aaPredicted RBP4.23□□□□□ -1.73
PRKD3-201ENST00000234179 GRIN2BQ13224 1484 aa4.23□□□□□ -1.73
PRKD3-201ENST00000234179 FOXD1Q16676 465 aa4.23□□□□□ -1.73
PRKD3-201ENST00000234179 CCDC88BA6NC98 1476 aa4.23□□□□□ -1.73
PRKD3-201ENST00000234179 ARAP1Q96P48 1450 aa4.23□□□□□ -1.73
PRKD3-201ENST00000234179 ZNF608Q9ULD9 1512 aaPredicted RBP4.23□□□□□ -1.73
PRKD3-201ENST00000234179 CYB5RLQ6IPT4 315 aa4.22□□□□□ -1.73
PRKD3-201ENST00000234179 SYNJ2O15056 1496 aa4.22□□□□□ -1.73
PRKD3-201ENST00000234179 TARBP1Q13395 1621 aaKnown RBP4.22□□□□□ -1.73
PRKD3-201ENST00000234179 POLA1P09884 1462 aaPredicted RBP4.21□□□□□ -1.73
PRKD3-201ENST00000234179 SOGA1O94964 1423 aa4.21□□□□□ -1.74
PRKD3-201ENST00000234179 CLASP1Q7Z460 1538 aa4.21□□□□□ -1.74
PRKD3-201ENST00000234179 CHMP7Q8WUX9 453 aaPredicted RBP4.21□□□□□ -1.74
PRKD3-201ENST00000234179 CHD1O14646 1710 aa4.19□□□□□ -1.74
PRKD3-201ENST00000234179 FBLN2P98095 1184 aa4.19□□□□□ -1.74
PRKD3-201ENST00000234179 AQRO60306 1485 aaKnown RBP eCLIP4.19□□□□□ -1.74
PRKD3-201ENST00000234179 SNAPC4Q5SXM2 1469 aa4.19□□□□□ -1.74
PRKD3-201ENST00000234179 GAPVD1Q14C86 1478 aa4.18□□□□□ -1.74
PRKD3-201ENST00000234179 FGD5Q6ZNL6 1462 aa4.17□□□□□ -1.74
PRKD3-201ENST00000234179 ABCA10Q8WWZ4 1543 aa4.17□□□□□ -1.74
PRKD3-201ENST00000234179 PPP6R1Q9UPN7 881 aa4.16□□□□□ -1.74
PRKD3-201ENST00000234179 TDRD9Q8NDG6 1382 aaKnown RBP4.16□□□□□ -1.74
PRKD3-201ENST00000234179 NPM1P06748 294 aaKnown RBP eCLIP4.15□□□□□ -1.74
PRKD3-201ENST00000234179 FHAD1B1AJZ9 1412 aa4.15□□□□□ -1.74
PRKD3-201ENST00000234179 NUP160Q12769 1436 aa4.15□□□□□ -1.74
PRKD3-201ENST00000234179 WRNQ14191 1432 aaPredicted RBP eCLIP4.15□□□□□ -1.74
PRKD3-201ENST00000234179 GRIN2AQ12879 1464 aa4.14□□□□□ -1.75
PRKD3-201ENST00000234179 RAD54L2Q9Y4B4 1467 aa4.14□□□□□ -1.75
PRKD3-201ENST00000234179 ERICH3Q5RHP9 1530 aa4.13□□□□□ -1.75
PRKD3-201ENST00000234179 ABCA5Q8WWZ7 1642 aa4.13□□□□□ -1.75
PRKD3-201ENST00000234179 CUX1P39880 1505 aa4.12□□□□□ -1.75
PRKD3-201ENST00000234179 ADAMTS12P58397 1594 aa4.12□□□□□ -1.75
PRKD3-201ENST00000234179 SHROOM2Q13796 1616 aa4.12□□□□□ -1.75
PRKD3-201ENST00000234179 MAPKBP1O60336 1514 aa4.12□□□□□ -1.75
PRKD3-201ENST00000234179 PBRM1Q86U86 1689 aa4.12□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 72.8 ms