RNA–Protein interactions for RNA: YKL213C

DOA1, Transcript of WD repeat protein required for ubiquitin-mediated protein degradation, yeast

Gene DOA1, Length 2,148 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
DOA1	YKL213C	SAP190	P36123	1033 aa		5.52	□□□□□ -1.53
DOA1	YKL213C	OPY1	P38271	328 aa		5.52	□□□□□ -1.53
DOA1	YKL213C	NPR3	P38742	1146 aa		5.52	□□□□□ -1.53
DOA1	YKL213C	NMD3	P38861	518 aa	Known RBP	5.52	□□□□□ -1.53
DOA1	YKL213C	LYS14	P40971	790 aa		5.52	□□□□□ -1.53
DOA1	YKL213C	YKE2	P52553	114 aa		5.52	□□□□□ -1.53
DOA1	YKL213C	RPT6	Q01939	405 aa	Known RBP	5.52	□□□□□ -1.53
DOA1	YKL213C	GDE1	Q02979	1223 aa		5.52	□□□□□ -1.53
DOA1	YKL213C	MYO5	Q04439	1219 aa	Known RBP	5.52	□□□□□ -1.53
DOA1	YKL213C	FBP1	P09201	348 aa		5.51	□□□□□ -1.53
DOA1	YKL213C	ACE2	P21192	770 aa		5.51	□□□□□ -1.53
DOA1	YKL213C	YMR124W	P39523	943 aa	Known RBP	5.51	□□□□□ -1.53
DOA1	YKL213C	PES4	P39684	611 aa		5.51	□□□□□ -1.53
DOA1	YKL213C	TIF4631	P39935	952 aa	Known RBP	5.51	□□□□□ -1.53
DOA1	YKL213C	CSM2	P40465	213 aa		5.51	□□□□□ -1.53
DOA1	YKL213C	ALG2	P43636	503 aa		5.51	□□□□□ -1.53
DOA1	YKL213C	TUS1	Q06412	1307 aa		5.51	□□□□□ -1.53
DOA1	YKL213C	TY1B-A	O13527	1196 aa	Known RBP	5.51	□□□□□ -1.53
DOA1	YKL213C	RPL8B	P29453	256 aa	Known RBP	5.51	□□□□□ -1.53
DOA1	YKL213C	VAB2	P40003	282 aa		5.51	□□□□□ -1.53
DOA1	YKL213C	FOL1	P53848	824 aa		5.51	□□□□□ -1.53
DOA1	YKL213C	ULP1	Q02724	621 aa		5.51	□□□□□ -1.53
DOA1	YKL213C	VPS30	Q02948	557 aa		5.51	□□□□□ -1.53
DOA1	YKL213C	VPS20	Q04272	221 aa		5.51	□□□□□ -1.53
DOA1	YKL213C	YOR111W	Q99210	232 aa		5.51	□□□□□ -1.53
DOA1	YKL213C	RPL19A	P0CX82	189 aa	Known RBP	5.5	□□□□□ -1.53
DOA1	YKL213C	RPL19B	P0CX83	189 aa	Predicted RBP	5.5	□□□□□ -1.53
DOA1	YKL213C	SAM2	P19358	384 aa	Known RBP	5.5	□□□□□ -1.53
DOA1	YKL213C	RNR3	P21672	869 aa	Known RBP	5.5	□□□□□ -1.53
DOA1	YKL213C	CDC60	P26637	1090 aa	Known RBP	5.5	□□□□□ -1.53
DOA1	YKL213C	BLI1	P35727	113 aa		5.5	□□□□□ -1.53
DOA1	YKL213C	PIM1	P36775	1133 aa		5.5	□□□□□ -1.53
DOA1	YKL213C	MAL31	P38156	614 aa		5.5	□□□□□ -1.53
DOA1	YKL213C	AKR1	P39010	764 aa		5.5	□□□□□ -1.53
DOA1	YKL213C	PSF2	P40359	213 aa		5.5	□□□□□ -1.53
DOA1	YKL213C	EPL1	P43572	832 aa		5.5	□□□□□ -1.53
DOA1	YKL213C	NPA3	P47122	385 aa		5.5	□□□□□ -1.53
DOA1	YKL213C	CTF18	P49956	741 aa		5.5	□□□□□ -1.53
DOA1	YKL213C	UBP10	P53874	792 aa	Predicted RBP	5.5	□□□□□ -1.53
DOA1	YKL213C	UBX5	Q06682	500 aa		5.5	□□□□□ -1.53
DOA1	YKL213C	SUB2	Q07478	446 aa	Known RBP	5.5	□□□□□ -1.53
DOA1	YKL213C	ERG12	P07277	443 aa		5.5	□□□□□ -1.53
DOA1	YKL213C	NUC1	P08466	329 aa		5.5	□□□□□ -1.53
DOA1	YKL213C	KRS1	P15180	591 aa	Known RBP	5.5	□□□□□ -1.53
DOA1	YKL213C	PAH1	P32567	862 aa		5.5	□□□□□ -1.53
DOA1	YKL213C	YHL017W	P38745	532 aa		5.5	□□□□□ -1.53
DOA1	YKL213C	UBP9	P39967	754 aa		5.5	□□□□□ -1.53
DOA1	YKL213C	AIM20	P40451	204 aa		5.5	□□□□□ -1.53
DOA1	YKL213C	YJL007C	P47080	104 aa		5.5	□□□□□ -1.53
DOA1	YKL213C	VID30	P53076	958 aa		5.5	□□□□□ -1.53
DOA1	YKL213C	ATG1	P53104	897 aa		5.5	□□□□□ -1.53
DOA1	YKL213C	YLR407W	Q06070	228 aa		5.5	□□□□□ -1.53
DOA1	YKL213C	ISW2	Q08773	1120 aa		5.5	□□□□□ -1.53
DOA1	YKL213C	TY3A-G	Q12173	290 aa		5.5	□□□□□ -1.53
DOA1	YKL213C	NOP58	Q12499	511 aa	Known RBP	5.5	□□□□□ -1.53
DOA1	YKL213C	TY3A-I	Q99219	290 aa		5.5	□□□□□ -1.53
DOA1	YKL213C	SRP54	P20424	541 aa	Known RBP	5.49	□□□□□ -1.53
DOA1	YKL213C	SPB4	P25808	606 aa	Predicted RBP	5.49	□□□□□ -1.53
DOA1	YKL213C	NOC2	P39744	710 aa	Known RBP	5.49	□□□□□ -1.53
DOA1	YKL213C	PUS1	Q12211	544 aa	Known RBP	5.49	□□□□□ -1.53
DOA1	YKL213C	VPS5	Q92331	675 aa		5.49	□□□□□ -1.53
DOA1	YKL213C	TY4B-P	A0A0B7P3V8	1104 aa		5.48	□□□□□ -1.53
DOA1	YKL213C	BMH2	P34730	273 aa	Known RBP	5.48	□□□□□ -1.53
DOA1	YKL213C	TTI1	P36097	1038 aa		5.48	□□□□□ -1.53
DOA1	YKL213C	VPS45	P38932	577 aa		5.48	□□□□□ -1.53
DOA1	YKL213C	BUD6	P41697	788 aa		5.48	□□□□□ -1.53
DOA1	YKL213C	ENT3	P47160	408 aa		5.48	□□□□□ -1.53
DOA1	YKL213C	HCA4	P20448	770 aa	Known RBP	5.48	□□□□□ -1.53
DOA1	YKL213C	RPA135	P22138	1203 aa	Known RBP	5.48	□□□□□ -1.53
DOA1	YKL213C	DEP1	P31385	405 aa		5.48	□□□□□ -1.53
DOA1	YKL213C	ERP2	P39704	215 aa		5.48	□□□□□ -1.53
DOA1	YKL213C	SOL4	P53315	255 aa		5.48	□□□□□ -1.53
DOA1	YKL213C	YML037C	Q03703	340 aa		5.48	□□□□□ -1.53
DOA1	YKL213C	TMA64	Q04600	565 aa	Known RBP	5.48	□□□□□ -1.53
DOA1	YKL213C	DSE3	Q08729	430 aa		5.48	□□□□□ -1.53
DOA1	YKL213C	ELG1	Q12050	791 aa		5.48	□□□□□ -1.53
DOA1	YKL213C	DIT2	P21595	489 aa		5.47	□□□□□ -1.53
DOA1	YKL213C	SWI4	P25302	1093 aa	Known RBP	5.47	□□□□□ -1.53
DOA1	YKL213C	MSH3	P25336	1018 aa		5.47	□□□□□ -1.53
DOA1	YKL213C	PER1	P25625	357 aa		5.47	□□□□□ -1.53
DOA1	YKL213C	TOM71	P38825	639 aa	Known RBP	5.47	□□□□□ -1.53
DOA1	YKL213C	IES1	P43579	692 aa		5.47	□□□□□ -1.53
DOA1	YKL213C	RSC8	P43609	557 aa	Known RBP	5.47	□□□□□ -1.53
DOA1	YKL213C	MDM1	Q01846	1127 aa		5.47	□□□□□ -1.53
DOA1	YKL213C	PRP3	Q03338	469 aa	Predicted RBP	5.47	□□□□□ -1.53
DOA1	YKL213C	HEL2	Q05580	639 aa	Known RBP	5.47	□□□□□ -1.53
DOA1	YKL213C	YDL121C	Q07541	149 aa		5.47	□□□□□ -1.53
DOA1	YKL213C	LSP1	Q12230	341 aa	Known RBP	5.47	□□□□□ -1.53
DOA1	YKL213C	HSP42	Q12329	375 aa		5.47	□□□□□ -1.53
DOA1	YKL213C	CPA2	P03965	1118 aa	Known RBP	5.47	□□□□□ -1.53
DOA1	YKL213C	BIK1	P11709	440 aa		5.47	□□□□□ -1.53
DOA1	YKL213C	CBP3	P21560	335 aa		5.47	□□□□□ -1.53
DOA1	YKL213C	TOM20	P35180	183 aa		5.47	□□□□□ -1.53
DOA1	YKL213C	BYE1	P36106	594 aa		5.47	□□□□□ -1.53
DOA1	YKL213C	RXT2	P38255	430 aa		5.47	□□□□□ -1.53
DOA1	YKL213C	RPN10	P38886	268 aa	Known RBP	5.47	□□□□□ -1.53
DOA1	YKL213C	PCI8	P40512	444 aa		5.47	□□□□□ -1.53
DOA1	YKL213C	HOS2	P53096	452 aa	Predicted RBP	5.47	□□□□□ -1.53
DOA1	YKL213C	YAF9	P53930	226 aa		5.47	□□□□□ -1.53
DOA1	YKL213C	YPL150W	Q12152	901 aa		5.47	□□□□□ -1.53

Retrieved 100 of 5,963 RNA–protein pairs in 51.6 ms