RNA–Protein interactions for RNA: YKR043C

SHB17, Transcript of Sedoheptulose bisphosphatase involved in riboneogenesis, yeast

Gene SHB17, Length 816 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SHB17	YKR043C	SOL4	P53315	255 aa		11.89	□□□□□ -0.51
SHB17	YKR043C	FOL1	P53848	824 aa		11.89	□□□□□ -0.51
SHB17	YKR043C	VPS30	Q02948	557 aa		11.89	□□□□□ -0.51
SHB17	YKR043C	RPT6	Q01939	405 aa	Known RBP	11.88	□□□□□ -0.51
SHB17	YKR043C	TFC6	Q06339	672 aa		11.88	□□□□□ -0.51
SHB17	YKR043C	MAK31	P23059	88 aa		11.87	□□□□□ -0.51
SHB17	YKR043C	MYO5	Q04439	1219 aa	Known RBP	11.87	□□□□□ -0.51
SHB17	YKR043C	TY3A-G	Q12173	290 aa		11.87	□□□□□ -0.51
SHB17	YKR043C	TY3A-I	Q99219	290 aa		11.87	□□□□□ -0.51
SHB17	YKR043C	NUC1	P08466	329 aa		11.86	□□□□□ -0.51
SHB17	YKR043C	RPL8B	P29453	256 aa	Known RBP	11.86	□□□□□ -0.51
SHB17	YKR043C	AIM9	P40053	627 aa	Known RBP	11.86	□□□□□ -0.51
SHB17	YKR043C	CSM2	P40465	213 aa		11.86	□□□□□ -0.51
SHB17	YKR043C	EST2	Q06163	884 aa		11.86	□□□□□ -0.51
SHB17	YKR043C	ESF1	Q06344	628 aa	Known RBP	11.86	□□□□□ -0.51
SHB17	YKR043C	SRS2	P12954	1174 aa		11.85	□□□□□ -0.51
SHB17	YKR043C	DIT2	P21595	489 aa		11.85	□□□□□ -0.51
SHB17	YKR043C	ATG1	P53104	897 aa		11.85	□□□□□ -0.51
SHB17	YKR043C	CLF1	Q12309	687 aa	Predicted RBP	11.85	□□□□□ -0.51
SHB17	YKR043C	RAD18	P10862	487 aa		11.84	□□□□□ -0.51
SHB17	YKR043C	VMA2	P16140	517 aa	Known RBP	11.84	□□□□□ -0.51
SHB17	YKR043C	RPC31	P17890	251 aa		11.84	□□□□□ -0.51
SHB17	YKR043C	SRP54	P20424	541 aa	Known RBP	11.84	□□□□□ -0.51
SHB17	YKR043C	PHO88	P38264	188 aa	Predicted RBP	11.84	□□□□□ -0.51
SHB17	YKR043C	VPS45	P38932	577 aa		11.84	□□□□□ -0.51
SHB17	YKR043C	SPO22	P40511	975 aa		11.84	□□□□□ -0.51
SHB17	YKR043C	TRL1	P09880	827 aa	Known RBP	11.83	□□□□□ -0.52
SHB17	YKR043C	PKC1	P24583	1151 aa		11.83	□□□□□ -0.52
SHB17	YKR043C	EUG1	P32474	517 aa		11.83	□□□□□ -0.52
SHB17	YKR043C	ALD6	P54115	500 aa	Known RBP	11.83	□□□□□ -0.52
SHB17	YKR043C	ECM23	Q02710	187 aa		11.83	□□□□□ -0.52
SHB17	YKR043C	GPB2	P39717	880 aa		11.82	□□□□□ -0.52
SHB17	YKR043C	KRI1	P42846	591 aa	Known RBP	11.82	□□□□□ -0.52
SHB17	YKR043C	ALG2	P43636	503 aa		11.82	□□□□□ -0.52
SHB17	YKR043C	SUE1	Q06524	206 aa		11.82	□□□□□ -0.52
SHB17	YKR043C	UTP4	Q06679	776 aa	Known RBP	11.81	□□□□□ -0.52
SHB17	YKR043C	YOR111W	Q99210	232 aa		11.81	□□□□□ -0.52
SHB17	YKR043C	SAM1	P10659	382 aa	Known RBP	11.8	□□□□□ -0.52
SHB17	YKR043C	SDH2	P21801	266 aa		11.8	□□□□□ -0.52
SHB17	YKR043C	TGL1	P34163	548 aa		11.8	□□□□□ -0.52
SHB17	YKR043C	YKR018C	P36114	725 aa		11.8	□□□□□ -0.52
SHB17	YKR043C	VID28	P40547	921 aa		11.8	□□□□□ -0.52
SHB17	YKR043C	MDM1	Q01846	1127 aa		11.8	□□□□□ -0.52
SHB17	YKR043C	TMA64	Q04600	565 aa	Known RBP	11.8	□□□□□ -0.52
SHB17	YKR043C	UTR4	P32626	227 aa		11.79	□□□□□ -0.52
SHB17	YKR043C	YAF9	P53930	226 aa		11.79	□□□□□ -0.52
SHB17	YKR043C	RNR3	P21672	869 aa	Known RBP	11.78	□□□□□ -0.52
SHB17	YKR043C	FBP26	P32604	452 aa		11.78	□□□□□ -0.52
SHB17	YKR043C	MAL31	P38156	614 aa		11.78	□□□□□ -0.52
SHB17	YKR043C	PSF2	P40359	213 aa		11.78	□□□□□ -0.52
SHB17	YKR043C	DUS4	Q06063	367 aa		11.78	□□□□□ -0.52
SHB17	YKR043C	SIS2	P36024	562 aa		11.77	□□□□□ -0.53
SHB17	YKR043C	AKR1	P39010	764 aa		11.77	□□□□□ -0.53
SHB17	YKR043C	LSB1	P53281	241 aa		11.77	□□□□□ -0.53
SHB17	YKR043C	CSC1	Q06538	782 aa		11.77	□□□□□ -0.53
SHB17	YKR043C	DSE3	Q08729	430 aa		11.77	□□□□□ -0.53
SHB17	YKR043C	CDC19	P00549	500 aa	Known RBP	11.76	□□□□□ -0.53
SHB17	YKR043C	SHP1	P34223	423 aa		11.76	□□□□□ -0.53
SHB17	YKR043C	NDT80	P38830	627 aa		11.76	□□□□□ -0.53
SHB17	YKR043C	YGR125W	P53273	1036 aa		11.76	□□□□□ -0.53
SHB17	YKR043C	SPH1	Q06160	661 aa		11.76	□□□□□ -0.53
SHB17	YKR043C	MATALPHA2	P0CY08	210 aa		11.75	□□□□□ -0.53
SHB17	YKR043C	HMLALPHA2	P0CY09	210 aa		11.75	□□□□□ -0.53
SHB17	YKR043C	SEC20	P28791	383 aa		11.75	□□□□□ -0.53
SHB17	YKR043C	TOM71	P38825	639 aa	Known RBP	11.75	□□□□□ -0.53
SHB17	YKR043C	ULP1	Q02724	621 aa		11.75	□□□□□ -0.53
SHB17	YKR043C	DUS3	Q06053	668 aa	Known RBP	11.75	□□□□□ -0.53
SHB17	YKR043C	ICL2	Q12031	575 aa		11.75	□□□□□ -0.53
SHB17	YKR043C	RNR2	P09938	399 aa	Known RBP	11.74	□□□□□ -0.53
SHB17	YKR043C	PRE10	P21242	288 aa	Known RBP RIP-Chip data	11.74	□□□□□ -0.53	not detected
SHB17	YKR043C	MXR1	P40029	184 aa		11.74	□□□□□ -0.53
SHB17	YKR043C	EPL1	P43572	832 aa		11.74	□□□□□ -0.53
SHB17	YKR043C	ARP5	P53946	755 aa		11.74	□□□□□ -0.53
SHB17	YKR043C	VIP1	Q06685	1146 aa	Known RBP	11.74	□□□□□ -0.53
SHB17	YKR043C	MET7	Q08645	548 aa		11.74	□□□□□ -0.53
SHB17	YKR043C	ISW2	Q08773	1120 aa		11.74	□□□□□ -0.53
SHB17	YKR043C	TSR3	Q12094	313 aa	Known RBP	11.74	□□□□□ -0.53
SHB17	YKR043C	CIT1	P00890	479 aa		11.73	□□□□□ -0.53
SHB17	YKR043C	PHR1	P05066	565 aa	Known RBP RIP-Chip data	11.73	□□□□□ -0.53	not detected
SHB17	YKR043C	PAH1	P32567	862 aa		11.73	□□□□□ -0.53
SHB17	YKR043C	SRP40	P32583	406 aa	Predicted RBP	11.73	□□□□□ -0.53
SHB17	YKR043C	RGT1	P32862	1170 aa		11.73	□□□□□ -0.53
SHB17	YKR043C	PAM1	P37304	830 aa	Known RBP	11.73	□□□□□ -0.53
SHB17	YKR043C	FMS1	P50264	508 aa		11.73	□□□□□ -0.53
SHB17	YKR043C	YKE2	P52553	114 aa		11.73	□□□□□ -0.53
SHB17	YKR043C	PIB1	Q06651	286 aa		11.73	□□□□□ -0.53
SHB17	YKR043C	GUD1	Q07729	489 aa		11.73	□□□□□ -0.53
SHB17	YKR043C	MCR1	P36060	302 aa	Known RBP	11.72	□□□□□ -0.53
SHB17	YKR043C	TPM2	P40414	161 aa		11.72	□□□□□ -0.53
SHB17	YKR043C	BUL2	Q03758	920 aa	Known RBP	11.72	□□□□□ -0.53
SHB17	YKR043C	YDR341C	Q05506	607 aa	Known RBP	11.72	□□□□□ -0.53
SHB17	YKR043C	MYO1	P08964	1928 aa		11.72	□□□□□ -0.53
SHB17	YKR043C	MET6	P05694	767 aa	Known RBP	11.71	□□□□□ -0.53
SHB17	YKR043C	RPL8A	P17076	256 aa	Known RBP	11.71	□□□□□ -0.53
SHB17	YKR043C	BMH2	P34730	273 aa	Known RBP	11.71	□□□□□ -0.53
SHB17	YKR043C	VPS29	P38759	282 aa		11.71	□□□□□ -0.53
SHB17	YKR043C	ASE1	P50275	885 aa		11.71	□□□□□ -0.53
SHB17	YKR043C	UBP10	P53874	792 aa	Predicted RBP	11.71	□□□□□ -0.53
SHB17	YKR043C	ARP8	Q12386	881 aa	Known RBP RIP-Chip data	11.71	□□□□□ -0.53	not detected
SHB17	YKR043C	ERP3	Q12403	225 aa		11.71	□□□□□ -0.53

Retrieved 100 of 5,963 RNA–protein pairs in 47.2 ms