RNA–Protein interactions for RNA: ENSMUST00000053440.7

Ccdc40-202, Transcript of Coiled-coil domain-containing protein 40, mousemouse

APPRIS ALT2 TSL 1 (best) BASIC

Gene Ccdc40, Length 3,524 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc40-202ENSMUST00000053440 Cdc42bpgQ80UW5 1551 aa12.21□□□□□ -0.45
Ccdc40-202ENSMUST00000053440 Asxl2Q8BZ32 1370 aa12.21□□□□□ -0.45
Ccdc40-202ENSMUST00000053440 Ankrd44B2RXR6 993 aa12.21□□□□□ -0.45
Ccdc40-202ENSMUST00000053440 Rsph3aQ3UFY4 516 aa12.21□□□□□ -0.46
Ccdc40-202ENSMUST00000053440 Fchsd2Q3USJ8 740 aa12.21□□□□□ -0.46
Ccdc40-202ENSMUST00000053440 Naip7Q9JIB3 1402 aa12.2□□□□□ -0.46
Ccdc40-202ENSMUST00000053440 Phf14Q9D4H9 881 aa12.2□□□□□ -0.46
Ccdc40-202ENSMUST00000053440 Pibf1E9Q6K3 756 aa12.2□□□□□ -0.46
Ccdc40-202ENSMUST00000053440 Triml2E9PW10 424 aa12.2□□□□□ -0.46
Ccdc40-202ENSMUST00000053440 Trim28Q62318 834 aa12.2□□□□□ -0.46
Ccdc40-202ENSMUST00000053440 Gnai1B2RSH2 354 aa12.19□□□□□ -0.46
Ccdc40-202ENSMUST00000053440 Trim27Q62158 513 aa12.19□□□□□ -0.46
Ccdc40-202ENSMUST00000053440 Paxip1Q6NZQ4 1056 aa12.19□□□□□ -0.46
Ccdc40-202ENSMUST00000053440 Gnai3Q9DC51 354 aa12.19□□□□□ -0.46
Ccdc40-202ENSMUST00000053440 AdgbG3UZ78 1657 aa12.19□□□□□ -0.46
Ccdc40-202ENSMUST00000053440 4933402E13RikQ9D4D2 429 aa12.19□□□□□ -0.46
Ccdc40-202ENSMUST00000053440 Uhrf1bp1lA2RSJ4 1457 aa12.19□□□□□ -0.46
Ccdc40-202ENSMUST00000053440 Ric3Q8BPM6 367 aa12.19□□□□□ -0.46
Ccdc40-202ENSMUST00000053440 Cetn4Q8K4K1 168 aa12.19□□□□□ -0.46
Ccdc40-202ENSMUST00000053440 Map3k19E9Q3S4 1311 aa12.19□□□□□ -0.46
Ccdc40-202ENSMUST00000053440 LifrP42703 1092 aa12.18□□□□□ -0.46
Ccdc40-202ENSMUST00000053440 Afap1Q80YS6 731 aa12.18□□□□□ -0.46
Ccdc40-202ENSMUST00000053440 RereQ80TZ9 1558 aa12.18□□□□□ -0.46
Ccdc40-202ENSMUST00000053440 Wwc1Q5SXA9 1104 aa12.18□□□□□ -0.46
Ccdc40-202ENSMUST00000053440 Aifm3Q3TY86 605 aa12.17□□□□□ -0.46
Ccdc40-202ENSMUST00000053440 PtprmP28828 1452 aa12.17□□□□□ -0.46
Ccdc40-202ENSMUST00000053440 Atp7bQ64446 1462 aa12.17□□□□□ -0.46
Ccdc40-202ENSMUST00000053440 Ppp1r15aP17564 657 aa12.16□□□□□ -0.46
Ccdc40-202ENSMUST00000053440 Smarca5Q91ZW3 1051 aaKnown RBP12.16□□□□□ -0.46
Ccdc40-202ENSMUST00000053440 FanclQ9CR14 375 aa12.16□□□□□ -0.46
Ccdc40-202ENSMUST00000053440 Ahdc1Q6PAL7 1594 aaKnown RBP12.16□□□□□ -0.46
Ccdc40-202ENSMUST00000053440 AglF8VPN4 1532 aa12.16□□□□□ -0.46
Ccdc40-202ENSMUST00000053440 Qser1A2BIE1 1698 aa12.16□□□□□ -0.46
Ccdc40-202ENSMUST00000053440 Gtf2a1Q99PM3 378 aa12.16□□□□□ -0.46
Ccdc40-202ENSMUST00000053440 Eif4g2Q62448 906 aaKnown RBP12.15□□□□□ -0.46
Ccdc40-202ENSMUST00000053440 Abca14E9Q8F8 1683 aa12.15□□□□□ -0.46
Ccdc40-202ENSMUST00000053440 MpripP97434 1024 aa12.15□□□□□ -0.47
Ccdc40-202ENSMUST00000053440 Chmp4bQ9D8B3 224 aaKnown RBP12.14□□□□□ -0.47
Ccdc40-202ENSMUST00000053440 Arhgef28P97433 1693 aa12.14□□□□□ -0.47
Ccdc40-202ENSMUST00000053440 Rsph6aQ8CDR2 708 aa12.14□□□□□ -0.47
Ccdc40-202ENSMUST00000053440 Cc2d1aQ8K1A6 943 aa12.14□□□□□ -0.47
Ccdc40-202ENSMUST00000053440 Trim44Q9QXA7 346 aa12.14□□□□□ -0.47
Ccdc40-202ENSMUST00000053440 Bloc1s4Q8VED2 215 aa12.14□□□□□ -0.47
Ccdc40-202ENSMUST00000053440 Kif20aP97329 887 aa12.13□□□□□ -0.47
Ccdc40-202ENSMUST00000053440 Pknox2Q8BG99 474 aa12.13□□□□□ -0.47
Ccdc40-202ENSMUST00000053440 Casq1O09165 405 aa12.12□□□□□ -0.47
Ccdc40-202ENSMUST00000053440 Znf541Q0GGX2 1363 aa12.12□□□□□ -0.47
Ccdc40-202ENSMUST00000053440 HnrnpuQ8VEK3 800 aaKnown RBP12.12□□□□□ -0.47
Ccdc40-202ENSMUST00000053440 Ppip5k2Q6ZQB6 1129 aa12.11□□□□□ -0.47
Ccdc40-202ENSMUST00000053440 NktrP30415 1453 aa12.11□□□□□ -0.47
Ccdc40-202ENSMUST00000053440 CalcaP70160 136 aa12.11□□□□□ -0.47
Ccdc40-202ENSMUST00000053440 NgefQ8CHT1 710 aa12.11□□□□□ -0.47
Ccdc40-202ENSMUST00000053440 Stk31Q99MW1 1018 aa12.11□□□□□ -0.47
Ccdc40-202ENSMUST00000053440 Chmp4cQ9D7F7 232 aa12.11□□□□□ -0.47
Ccdc40-202ENSMUST00000053440 Kif24Q6NWW5 1356 aa12.11□□□□□ -0.47
Ccdc40-202ENSMUST00000053440 Gm156Q58A37 223 aa12.11□□□□□ -0.47
Ccdc40-202ENSMUST00000053440 Cgnl1Q6AW69 1298 aa12.11□□□□□ -0.47
Ccdc40-202ENSMUST00000053440 Kdm4cQ8VCD7 1054 aa12.11□□□□□ -0.47
Ccdc40-202ENSMUST00000053440 Ggnbp2Q5SV77 696 aa12.1□□□□□ -0.47
Ccdc40-202ENSMUST00000053440 Fam13aQ8BGI4 693 aa12.1□□□□□ -0.47
Ccdc40-202ENSMUST00000053440 Pabpn1Q8CCS6 302 aaKnown RBP12.1□□□□□ -0.47
Ccdc40-202ENSMUST00000053440 Bag4Q8CI61 457 aa12.1□□□□□ -0.47
Ccdc40-202ENSMUST00000053440 1700010I14RikQ7TPG0 532 aa12.1□□□□□ -0.47
Ccdc40-202ENSMUST00000053440 Usp32F8VPZ3 1604 aa12.1□□□□□ -0.47
Ccdc40-202ENSMUST00000053440 Cul9Q80TT8 1865 aa12.1□□□□□ -0.47
Ccdc40-202ENSMUST00000053440 MarsQ68FL6 902 aaKnown RBP12.1□□□□□ -0.47
Ccdc40-202ENSMUST00000053440 Ppp6r3Q922D4 844 aa12.1□□□□□ -0.47
Ccdc40-202ENSMUST00000053440 CenppQ9CZ92 286 aa12.1□□□□□ -0.47
Ccdc40-202ENSMUST00000053440 CltcQ68FD5 1675 aaKnown RBP12.1□□□□□ -0.47
Ccdc40-202ENSMUST00000053440 Adamts7Q68SA9 1657 aa12.1□□□□□ -0.47
Ccdc40-202ENSMUST00000053440 Ncapd2Q8K2Z4 1392 aa12.09□□□□□ -0.47
Ccdc40-202ENSMUST00000053440 Rab11fip3Q8CHD8 1047 aa12.09□□□□□ -0.47
Ccdc40-202ENSMUST00000053440 Rasa1E9PYG6 1038 aa12.09□□□□□ -0.47
Ccdc40-202ENSMUST00000053440 Prkar2bP31324 416 aa12.09□□□□□ -0.47
Ccdc40-202ENSMUST00000053440 Idi2Q8BFZ6 227 aa12.09□□□□□ -0.47
Ccdc40-202ENSMUST00000053440 EngaseQ8BX80 734 aa12.09□□□□□ -0.47
Ccdc40-202ENSMUST00000053440 Q9D2X8 372 aa12.09□□□□□ -0.47
Ccdc40-202ENSMUST00000053440 Pdia3P27773 505 aaKnown RBP12.08□□□□□ -0.47
Ccdc40-202ENSMUST00000053440 Txndc2Q6P902 515 aa12.08□□□□□ -0.47
Ccdc40-202ENSMUST00000053440 Eif4a2P10630 407 aa12.08□□□□□ -0.48
Ccdc40-202ENSMUST00000053440 Psme1P97371 249 aa12.08□□□□□ -0.48
Ccdc40-202ENSMUST00000053440 Aldh8a1Q8BH00 487 aa12.08□□□□□ -0.48
Ccdc40-202ENSMUST00000053440 Rrp9Q91WM3 475 aaKnown RBP12.07□□□□□ -0.48
Ccdc40-202ENSMUST00000053440 Rtn4Q99P72 1162 aaKnown RBP12.07□□□□□ -0.48
Ccdc40-202ENSMUST00000053440 Gcc1Q9D4H2 778 aa12.07□□□□□ -0.48
Ccdc40-202ENSMUST00000053440 Nucb1Q02819 459 aaKnown RBP12.07□□□□□ -0.48
Ccdc40-202ENSMUST00000053440 PtmaP26350 111 aa12.07□□□□□ -0.48
Ccdc40-202ENSMUST00000053440 Sos1Q62245 1319 aa12.06□□□□□ -0.48
Ccdc40-202ENSMUST00000053440 Anapc15-psA0A140T8L6 141 aa12.06□□□□□ -0.48
Ccdc40-202ENSMUST00000053440 Cavin2Q63918 418 aaKnown RBP12.06□□□□□ -0.48
Ccdc40-202ENSMUST00000053440 Erich6bQ9D4S6 220 aa12.06□□□□□ -0.48
Ccdc40-202ENSMUST00000053440 Kif13aQ9EQW7 1749 aa12.06□□□□□ -0.48
Ccdc40-202ENSMUST00000053440 Snap23O09044 210 aa12.06□□□□□ -0.48
Ccdc40-202ENSMUST00000053440 Tmx3Q8BXZ1 456 aa12.06□□□□□ -0.48
Ccdc40-202ENSMUST00000053440 Prim1P20664 417 aa12.06□□□□□ -0.48
Ccdc40-202ENSMUST00000053440 Plekhg1F6S200 1446 aa12.05□□□□□ -0.48
Ccdc40-202ENSMUST00000053440 Atg4a-psA0A0G2JFS9 396 aa12.05□□□□□ -0.48
Ccdc40-202ENSMUST00000053440 Isy1Q69ZQ2 285 aaKnown RBP12.05□□□□□ -0.48
Ccdc40-202ENSMUST00000053440 Zkscan1Q8BGS3 561 aaKnown RBP12.05□□□□□ -0.48
Ccdc40-202ENSMUST00000053440 Ppp1r18Q8BQ30 594 aa12.05□□□□□ -0.48
Retrieved 100 of 22,080 RNA–protein pairs in 12.2 ms