Protein–RNA interactions for Protein: Q8CHD8

Rab11fip3, Rab11 family-interacting protein 3, mousemouse

Predictions only

Length 1,047 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rab11fip3Q8CHD8 Gm25239-201ENSMUST00000174915 86 ntBASIC50,33■■■■■ 5,65
Rab11fip3Q8CHD8 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC46,45■■■■■ 5,03
Rab11fip3Q8CHD8 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC45,93■■■■■ 4,94
Rab11fip3Q8CHD8 Gm15042-201ENSMUST00000120212 883 ntBASIC44,13■■■■■ 4,66
Rab11fip3Q8CHD8 Gm24109-201ENSMUST00000175489 103 ntBASIC43,52■■■■■ 4,56
Rab11fip3Q8CHD8 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC43,47■■■■■ 4,55
Rab11fip3Q8CHD8 Gm15045-201ENSMUST00000117359 883 ntBASIC43,14■■■■■ 4,5
Rab11fip3Q8CHD8 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC42,81■■■■■ 4,44
Rab11fip3Q8CHD8 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC42,8■■■■■ 4,44
Rab11fip3Q8CHD8 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC42,52■■■■■ 4,4
Rab11fip3Q8CHD8 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC42,34■■■■■ 4,37
Rab11fip3Q8CHD8 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC42,2■■■■■ 4,35
Rab11fip3Q8CHD8 Gm23366-201ENSMUST00000175022 89 ntBASIC42,12■■■■■ 4,33
Rab11fip3Q8CHD8 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC41,86■■■■■ 4,29
Rab11fip3Q8CHD8 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC41,21■■■■■ 4,19
Rab11fip3Q8CHD8 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC41,2■■■■■ 4,19
Rab11fip3Q8CHD8 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC40,96■■■■■ 4,15
Rab11fip3Q8CHD8 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC40,81■■■■■ 4,12
Rab11fip3Q8CHD8 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC40,79■■■■■ 4,12
Rab11fip3Q8CHD8 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC40,61■■■■■ 4,09
Rab11fip3Q8CHD8 AC153911.1-202ENSMUST00000218534 1034 ntBASIC40,51■■■■■ 4,08
Rab11fip3Q8CHD8 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC40,44■■■■■ 4,06
Rab11fip3Q8CHD8 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC40,38■■■■■ 4,06
Rab11fip3Q8CHD8 Gm20732-201ENSMUST00000175699 686 ntTSL 3 BASIC40,25■■■■■ 4,03
Rab11fip3Q8CHD8 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC40,25■■■■■ 4,03
Rab11fip3Q8CHD8 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC40,24■■■■■ 4,03
Rab11fip3Q8CHD8 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC40,16■■■■■ 4,02
Rab11fip3Q8CHD8 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC40,15■■■■■ 4,02
Rab11fip3Q8CHD8 Fgf2-204ENSMUST00000138563 1240 ntAPPRIS P2 TSL 5 BASIC40,11■■■■■ 4,01
Rab11fip3Q8CHD8 Psd-208ENSMUST00000224556 2034 ntBASIC40,01■■■■■ 4
Rab11fip3Q8CHD8 Rexo2-201ENSMUST00000034524 1077 ntAPPRIS P1 TSL 1 (best) BASIC39,91■■■■□ 3,98
Rab11fip3Q8CHD8 Fgf18-201ENSMUST00000020507 1086 ntAPPRIS P1 TSL 1 (best) BASIC39,9■■■■□ 3,98
Rab11fip3Q8CHD8 Pkig-201ENSMUST00000064703 1036 ntAPPRIS P1 TSL 1 (best) BASIC39,85■■■■□ 3,97
Rab11fip3Q8CHD8 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC39,82■■■■□ 3,97
Rab11fip3Q8CHD8 Drap1-203ENSMUST00000113674 939 ntTSL 2 BASIC39,75■■■■□ 3,95
Rab11fip3Q8CHD8 Gm25238-201ENSMUST00000174914 89 ntBASIC39,67■■■■□ 3,94
Rab11fip3Q8CHD8 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC39,44■■■■□ 3,9
Rab11fip3Q8CHD8 Asmt-201ENSMUST00000178693 1191 ntAPPRIS P1 TSL 1 (best) BASIC39,41■■■■□ 3,9
Rab11fip3Q8CHD8 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC39,17■■■■□ 3,86
Rab11fip3Q8CHD8 Syce2-204ENSMUST00000170296 929 ntAPPRIS ALT2 TSL 2 BASIC39,05■■■■□ 3,84
Rab11fip3Q8CHD8 Drap1-201ENSMUST00000025853 992 ntAPPRIS P1 TSL 1 (best) BASIC39,03■■■■□ 3,84
Rab11fip3Q8CHD8 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC38,98■■■■□ 3,83
Rab11fip3Q8CHD8 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC38,95■■■■□ 3,83
Rab11fip3Q8CHD8 Rnf149-204ENSMUST00000195705 389 ntTSL 3 BASIC38,86■■■■□ 3,81
Rab11fip3Q8CHD8 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC38,8■■■■□ 3,8
Rab11fip3Q8CHD8 Gm27325-201ENSMUST00000175467 74 ntBASIC38,72■■■■□ 3,79
Rab11fip3Q8CHD8 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC38,65■■■■□ 3,78
Rab11fip3Q8CHD8 Crk-204ENSMUST00000108426 671 ntTSL 3 BASIC38,64■■■■□ 3,78
Rab11fip3Q8CHD8 Crk-202ENSMUST00000093115 965 ntTSL 1 (best) BASIC38,63■■■■□ 3,77
Rab11fip3Q8CHD8 Tmem240-201ENSMUST00000127188 1308 ntAPPRIS P1 TSL 2 BASIC38,53■■■■□ 3,76
Rab11fip3Q8CHD8 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC38,5■■■■□ 3,75
Rab11fip3Q8CHD8 Tprgl-202ENSMUST00000105639 642 ntTSL 5 BASIC38,41■■■■□ 3,74
Rab11fip3Q8CHD8 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC38,34■■■■□ 3,73
Rab11fip3Q8CHD8 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC38,28■■■■□ 3,72
Rab11fip3Q8CHD8 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC38,27■■■■□ 3,72
Rab11fip3Q8CHD8 Sh3glb2-214ENSMUST00000163668 1733 ntTSL 5 BASIC38,21■■■■□ 3,71
Rab11fip3Q8CHD8 Cacng8-201ENSMUST00000092351 1380 ntAPPRIS P1 TSL 1 (best) BASIC38,18■■■■□ 3,7
Rab11fip3Q8CHD8 Gm25262-201ENSMUST00000174934 133 ntBASIC38,02■■■■□ 3,68
Rab11fip3Q8CHD8 Rab21-202ENSMUST00000218831 843 ntBASIC37,96■■■■□ 3,67
Rab11fip3Q8CHD8 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC37,95■■■■□ 3,67
Rab11fip3Q8CHD8 Nrgn-201ENSMUST00000065668 1453 ntAPPRIS P1 TSL 1 (best) BASIC37,92■■■■□ 3,66
Rab11fip3Q8CHD8 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC37,92■■■■□ 3,66
Rab11fip3Q8CHD8 Ppp2cb-201ENSMUST00000009774 1469 ntAPPRIS P1 TSL 1 (best) BASIC37,9■■■■□ 3,66
Rab11fip3Q8CHD8 Wtip-201ENSMUST00000038537 1962 ntAPPRIS P1 TSL 1 (best) BASIC37,88■■■■□ 3,65
Rab11fip3Q8CHD8 Glrx5-203ENSMUST00000223244 793 ntTSL 5 BASIC37,82■■■■□ 3,64
Rab11fip3Q8CHD8 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC37,76■■■■□ 3,64
Rab11fip3Q8CHD8 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC37,75■■■■□ 3,63
Rab11fip3Q8CHD8 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC37,74■■■■□ 3,63
Rab11fip3Q8CHD8 Mta3-202ENSMUST00000112349 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC37,72■■■■□ 3,63
Rab11fip3Q8CHD8 Atoh7-201ENSMUST00000044059 1629 ntAPPRIS P1 BASIC37,72■■■■□ 3,63
Rab11fip3Q8CHD8 Pkdcc-204ENSMUST00000170794 2446 ntAPPRIS P1 TSL 1 (best) BASIC37,68■■■■□ 3,62
Rab11fip3Q8CHD8 Gm10524-201ENSMUST00000181931 1893 ntBASIC37,67■■■■□ 3,62
Rab11fip3Q8CHD8 Tmed7-201ENSMUST00000036030 1436 ntTSL 5 BASIC37,64■■■■□ 3,62
Rab11fip3Q8CHD8 Fam220a-203ENSMUST00000118121 919 ntTSL 1 (best) BASIC37,61■■■■□ 3,61
Rab11fip3Q8CHD8 Vps37d-201ENSMUST00000067935 1544 ntAPPRIS P1 TSL 1 (best) BASIC37,53■■■■□ 3,6
Rab11fip3Q8CHD8 Sh3glb2-201ENSMUST00000028214 1810 ntAPPRIS P1 TSL 1 (best) BASIC37,5■■■■□ 3,59
Rab11fip3Q8CHD8 Trabd-203ENSMUST00000165690 1941 ntAPPRIS P2 TSL 1 (best) BASIC37,49■■■■□ 3,59
Rab11fip3Q8CHD8 Fam122a-201ENSMUST00000099556 855 ntAPPRIS P1 BASIC37,49■■■■□ 3,59
Rab11fip3Q8CHD8 B430219N15Rik-202ENSMUST00000180853 1105 ntBASIC37,48■■■■□ 3,59
Rab11fip3Q8CHD8 Cdk9-201ENSMUST00000009699 1733 ntAPPRIS P1 TSL 1 (best) BASIC37,41■■■■□ 3,58
Rab11fip3Q8CHD8 Zic2-201ENSMUST00000075888 2440 ntAPPRIS P1 TSL 1 (best) BASIC37,4■■■■□ 3,58
Rab11fip3Q8CHD8 Gpr137c-202ENSMUST00000147957 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC37,36■■■■□ 3,57
Rab11fip3Q8CHD8 Rab12-201ENSMUST00000070538 2057 ntAPPRIS ALT2 TSL 1 (best) BASIC37,36■■■■□ 3,57
Rab11fip3Q8CHD8 Gsx2-202ENSMUST00000160104 1182 ntTSL 1 (best) BASIC37,33■■■■□ 3,57
Rab11fip3Q8CHD8 Crebl2-202ENSMUST00000111937 612 ntTSL 3 BASIC37,29■■■■□ 3,56
Rab11fip3Q8CHD8 CT025624.2-201ENSMUST00000223609 1909 ntBASIC37,23■■■■□ 3,55
Rab11fip3Q8CHD8 BC030336-205ENSMUST00000208454 813 ntTSL 2 BASIC37,21■■■■□ 3,55
Rab11fip3Q8CHD8 Kctd9-204ENSMUST00000150768 1302 ntAPPRIS P1 TSL 5 BASIC37,15■■■■□ 3,54
Rab11fip3Q8CHD8 Agap3-206ENSMUST00000212381 1191 ntTSL 5 BASIC37,15■■■■□ 3,54
Rab11fip3Q8CHD8 Gm42596-201ENSMUST00000196305 1958 ntBASIC37,12■■■■□ 3,53
Rab11fip3Q8CHD8 Nkx3-2-201ENSMUST00000060820 1718 ntAPPRIS P1 TSL 1 (best) BASIC37,09■■■■□ 3,53
Rab11fip3Q8CHD8 B3gat3-201ENSMUST00000096243 1601 ntAPPRIS P1 TSL 1 (best) BASIC37,09■■■■□ 3,53
Rab11fip3Q8CHD8 Stard10-201ENSMUST00000032927 1400 ntAPPRIS P1 TSL 1 (best) BASIC37,08■■■■□ 3,53
Rab11fip3Q8CHD8 Gm26115-201ENSMUST00000175605 87 ntBASIC37,02■■■■□ 3,52
Rab11fip3Q8CHD8 Pabpn1-201ENSMUST00000022808 1030 ntAPPRIS P2 TSL 1 (best) BASIC37,02■■■■□ 3,52
Rab11fip3Q8CHD8 Ino80b-202ENSMUST00000113935 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC37■■■■□ 3,51
Rab11fip3Q8CHD8 Bcl7c-201ENSMUST00000061468 1132 ntAPPRIS P1 TSL 1 (best) BASIC36,98■■■■□ 3,51
Rab11fip3Q8CHD8 Svbp-202ENSMUST00000097908 832 ntTSL 2 BASIC36,93■■■■□ 3,5
Rab11fip3Q8CHD8 Gm12339-201ENSMUST00000127424 728 ntTSL 3 BASIC36,92■■■■□ 3,5
Rab11fip3Q8CHD8 Olfm1-203ENSMUST00000102879 1072 ntTSL 1 (best) BASIC36,87■■■■□ 3,49
Retrieved 100 of 76,532 protein–RNA pairs in 12,2 ms