RNA–Protein interactions for RNA: YKL054C

DEF1, Transcript of RNAPII degradation factor, yeastyeast

Gene DEF1, Length 2,217 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
DEF1YKL054C FAR1P21268 830 aa5.51□□□□□ -1.53
DEF1YKL054C RPL24BP24000 155 aaKnown RBP5.51□□□□□ -1.53
DEF1YKL054C PTP1P25044 335 aa5.51□□□□□ -1.53
DEF1YKL054C ERV46P39727 415 aa5.51□□□□□ -1.53
DEF1YKL054C AHA1Q12449 350 aaKnown RBP5.51□□□□□ -1.53
DEF1YKL054C PMA2P19657 947 aa5.51□□□□□ -1.53
DEF1YKL054C RPS2P25443 254 aaKnown RBP5.51□□□□□ -1.53
DEF1YKL054C VMA6P32366 345 aaKnown RBP5.51□□□□□ -1.53
DEF1YKL054C SKN1P33336 771 aa5.51□□□□□ -1.53
DEF1YKL054C MYO3P36006 1272 aa5.51□□□□□ -1.53
DEF1YKL054C CBT1P36038 271 aaPredicted RBP5.51□□□□□ -1.53
DEF1YKL054C ERG28P40030 148 aa5.51□□□□□ -1.53
DEF1YKL054C YIL060WP40519 144 aa5.51□□□□□ -1.53
DEF1YKL054C YGL117WP53133 265 aa5.51□□□□□ -1.53
DEF1YKL054C OKP1P53298 406 aa5.51□□□□□ -1.53
DEF1YKL054C RRN9P53437 365 aa5.51□□□□□ -1.53
DEF1YKL054C YMR226CQ05016 267 aaKnown RBP5.51□□□□□ -1.53
DEF1YKL054C BRX1Q08235 291 aaKnown RBP5.51□□□□□ -1.53
DEF1YKL054C DSE3Q08729 430 aa5.51□□□□□ -1.53
DEF1YKL054C VIK1Q12045 647 aa5.51□□□□□ -1.53
DEF1YKL054C SEY1Q99287 776 aa5.51□□□□□ -1.53
DEF1YKL054C BAR1P12630 587 aa5.5□□□□□ -1.53
DEF1YKL054C DAL82P21705 255 aa5.5□□□□□ -1.53
DEF1YKL054C YSR3P23501 404 aa5.5□□□□□ -1.53
DEF1YKL054C PCL6P40038 420 aa5.5□□□□□ -1.53
DEF1YKL054C POP1P41812 875 aa5.5□□□□□ -1.53
DEF1YKL054C YGR210CP42942 411 aa5.5□□□□□ -1.53
DEF1YKL054C CWC23P52868 283 aaPredicted RBP5.5□□□□□ -1.53
DEF1YKL054C LIF1P53150 421 aa5.5□□□□□ -1.53
DEF1YKL054C MKC7P53379 596 aa5.5□□□□□ -1.53
DEF1YKL054C YIF1P53845 314 aaKnown RBP5.5□□□□□ -1.53
DEF1YKL054C KRE28Q04431 385 aa5.5□□□□□ -1.53
DEF1YKL054C ASA1Q06822 443 aa5.5□□□□□ -1.53
DEF1YKL054C THI3Q07471 609 aa5.5□□□□□ -1.53
DEF1YKL054C ABP140Q08641 628 aaKnown RBP5.5□□□□□ -1.53
DEF1YKL054C SLF1Q12034 447 aaKnown RBP5.5□□□□□ -1.53
DEF1YKL054C RGS2Q99188 309 aa5.5□□□□□ -1.53
DEF1YKL054C YOR338WQ99326 363 aa5.5□□□□□ -1.53
DEF1YKL054C RNQ1P25367 405 aa5.5□□□□□ -1.53
DEF1YKL054C MRPL9P31334 269 aa5.5□□□□□ -1.53
DEF1YKL054C SHO1P40073 367 aa5.5□□□□□ -1.53
DEF1YKL054C AGP3P43548 558 aa5.5□□□□□ -1.53
DEF1YKL054C AVT1P47082 602 aa5.5□□□□□ -1.53
DEF1YKL054C RVB1Q03940 463 aaKnown RBP5.5□□□□□ -1.53
DEF1YKL054C CAC2Q04199 468 aa5.5□□□□□ -1.53
DEF1YKL054C YLR108CQ12259 485 aa5.5□□□□□ -1.53
DEF1YKL054C PUT3P25502 979 aaPredicted RBP5.49□□□□□ -1.53
DEF1YKL054C ATG7P38862 630 aa5.49□□□□□ -1.53
DEF1YKL054C FAU1P40099 211 aa5.49□□□□□ -1.53
DEF1YKL054C DUG3P53871 357 aa5.49□□□□□ -1.53
DEF1YKL054C ADH6Q04894 360 aaKnown RBP5.49□□□□□ -1.53
DEF1YKL054C CDD1Q06549 142 aa5.49□□□□□ -1.53
DEF1YKL054C YKL183C-AQ3E765 70 aa5.49□□□□□ -1.53
DEF1YKL054C ATP6P00854 259 aa5.48□□□□□ -1.53
DEF1YKL054C RAD7P06779 565 aa5.48□□□□□ -1.53
DEF1YKL054C GAS1P22146 559 aaKnown RBP5.48□□□□□ -1.53
DEF1YKL054C VMA5P31412 392 aaKnown RBP5.48□□□□□ -1.53
DEF1YKL054C SPS19P32573 292 aaKnown RBP5.48□□□□□ -1.53
DEF1YKL054C MIC12P38341 106 aa5.48□□□□□ -1.53
DEF1YKL054C CBR1P38626 284 aaKnown RBP5.48□□□□□ -1.53
DEF1YKL054C COX16P47081 118 aa5.48□□□□□ -1.53
DEF1YKL054C NOP19P53317 196 aaPredicted RBP5.48□□□□□ -1.53
DEF1YKL054C SMM1P53720 384 aaKnown RBP5.48□□□□□ -1.53
DEF1YKL054C ALG11P53954 548 aaKnown RBP5.48□□□□□ -1.53
DEF1YKL054C YRB1P41920 201 aaKnown RBP5.48□□□□□ -1.53
DEF1YKL054C HOC1P47124 396 aa5.48□□□□□ -1.53
DEF1YKL054C SED5Q01590 340 aa5.48□□□□□ -1.53
DEF1YKL054C SNF8Q12483 233 aa5.48□□□□□ -1.53
DEF1YKL054C STE18P18852 110 aa5.47□□□□□ -1.53
DEF1YKL054C VPS1P21576 704 aaKnown RBP5.47□□□□□ -1.53
DEF1YKL054C KIN3P22209 435 aa5.47□□□□□ -1.53
DEF1YKL054C ELM1P32801 640 aa5.47□□□□□ -1.53
DEF1YKL054C THI80P35202 319 aa5.47□□□□□ -1.53
DEF1YKL054C YMC2P38087 329 aa5.47□□□□□ -1.53
DEF1YKL054C SEH1P53011 349 aaKnown RBP5.47□□□□□ -1.53
DEF1YKL054C MRPL50P53724 139 aa5.47□□□□□ -1.53
DEF1YKL054C YVH1Q02256 364 aaKnown RBP5.47□□□□□ -1.53
DEF1YKL054C GFD1Q04839 188 aaKnown RBP5.47□□□□□ -1.53
DEF1YKL054C RRI1Q12468 440 aa5.47□□□□□ -1.53
DEF1YKL054C HEM2P05373 342 aa5.47□□□□□ -1.53
DEF1YKL054C ARF1P11076 181 aaKnown RBP5.47□□□□□ -1.53
DEF1YKL054C YAK1P14680 807 aa5.47□□□□□ -1.53
DEF1YKL054C CBF1P17106 351 aa5.47□□□□□ -1.53
DEF1YKL054C SLM5P25345 492 aaKnown RBP5.47□□□□□ -1.53
DEF1YKL054C ERG9P29704 444 aa5.47□□□□□ -1.53
DEF1YKL054C TMT1P32643 299 aa5.47□□□□□ -1.53
DEF1YKL054C IST2P38250 946 aa5.47□□□□□ -1.53
DEF1YKL054C FHL1P39521 936 aa5.47□□□□□ -1.53
DEF1YKL054C EXO1P39875 702 aa5.47□□□□□ -1.53
DEF1YKL054C TIS11P47977 285 aa5.47□□□□□ -1.53
DEF1YKL054C RHO4Q00246 291 aa5.47□□□□□ -1.53
DEF1YKL054C CDC14Q00684 551 aa5.47□□□□□ -1.53
DEF1YKL054C BER1Q06688 274 aaKnown RBP5.47□□□□□ -1.53
DEF1YKL054C YRA1Q12159 226 aaKnown RBP5.47□□□□□ -1.53
DEF1YKL054C YLL056CQ12177 298 aa5.47□□□□□ -1.53
DEF1YKL054C GAL4P04386 881 aa5.46□□□□□ -1.54
DEF1YKL054C RPL27AP0C2H6 136 aaKnown RBP5.46□□□□□ -1.54
DEF1YKL054C RPL27BP0C2H7 136 aaKnown RBP5.46□□□□□ -1.54
DEF1YKL054C REV1P12689 985 aa5.46□□□□□ -1.54
DEF1YKL054C YCR006CP25350 157 aa5.46□□□□□ -1.54
Retrieved 100 of 5,963 RNA–protein pairs in 22.9 ms