RNA–Protein interactions for RNA: YKL054C

DEF1, Transcript of RNAPII degradation factor, yeastyeast

Gene DEF1, Length 2,217 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
DEF1YKL054C MTC1P47018 478 aaKnown RBP13.85□□□□□ -0.19
DEF1YKL054C DRS1P32892 752 aaKnown RBP13.71□□□□□ -0.21
DEF1YKL054C TFA1P36100 482 aa12.06□□□□□ -0.48
DEF1YKL054C BFR2Q06631 534 aaKnown RBP11.76□□□□□ -0.53
DEF1YKL054C DIP2Q12220 943 aaPredicted RBP11.75□□□□□ -0.53
DEF1YKL054C AVT3P36062 692 aa11.62□□□□□ -0.55
DEF1YKL054C FAP1P53971 965 aa11.46□□□□□ -0.57
DEF1YKL054C RQC2Q12532 1038 aaKnown RBP11.31□□□□□ -0.6
DEF1YKL054C PRI1P10363 409 aa11.23□□□□□ -0.61
DEF1YKL054C ISW2Q08773 1120 aa11.22□□□□□ -0.61
DEF1YKL054C RPG1P38249 964 aaKnown RBP11.14□□□□□ -0.63
DEF1YKL054C RSE1Q04693 1361 aaKnown RBP11.09□□□□□ -0.63
DEF1YKL054C AAD16Q02895 342 aa11.01□□□□□ -0.65
DEF1YKL054C TAF7Q05021 590 aa11□□□□□ -0.65
DEF1YKL054C PRY3P47033 881 aa10.76□□□□□ -0.69
DEF1YKL054C RPL17AP05740 184 aaKnown RBP10.7□□□□□ -0.7
DEF1YKL054C RPL17BP46990 184 aaKnown RBP10.7□□□□□ -0.7
DEF1YKL054C TSR3Q12094 313 aaKnown RBP10.65□□□□□ -0.71
DEF1YKL054C REB1P21538 810 aa10.53□□□□□ -0.72
DEF1YKL054C DMA1P38823 416 aa10.39□□□□□ -0.75
DEF1YKL054C SPT21P35209 758 aa10.39□□□□□ -0.75
DEF1YKL054C YCK3P39962 524 aa10.38□□□□□ -0.75
DEF1YKL054C LEO1P38439 464 aa10.19□□□□□ -0.78
DEF1YKL054C RIM101P33400 625 aa10.19□□□□□ -0.78
DEF1YKL054C MRPL32P25348 183 aa10.15□□□□□ -0.78
DEF1YKL054C HAA1Q12753 694 aaKnown RBP10.13□□□□□ -0.79
DEF1YKL054C YKR023WP36119 530 aaKnown RBP10.1□□□□□ -0.79
DEF1YKL054C CDC27P38042 758 aa9.91□□□□□ -0.82
DEF1YKL054C OXP1P28273 1286 aa9.9□□□□□ -0.82
DEF1YKL054C TFC8Q12308 588 aa9.86□□□□□ -0.83
DEF1YKL054C HOP09932 586 aa9.85□□□□□ -0.83
DEF1YKL054C DCD1P06773 312 aa9.81□□□□□ -0.84
DEF1YKL054C PTP3P40048 928 aa9.68□□□□□ -0.86
DEF1YKL054C LEU3P08638 886 aa9.64□□□□□ -0.87
DEF1YKL054C YAH1Q12184 172 aaKnown RBP9.64□□□□□ -0.87
DEF1YKL054C YIL055CP40523 627 aaKnown RBP9.62□□□□□ -0.87
DEF1YKL054C SSP1P38871 571 aa9.62□□□□□ -0.87
DEF1YKL054C YLR271WQ06152 274 aa9.59□□□□□ -0.87
DEF1YKL054C BCH2P36122 765 aa9.58□□□□□ -0.88
DEF1YKL054C SAS10Q12136 610 aaPredicted RBP9.54□□□□□ -0.88
DEF1YKL054C RSM7P47150 247 aa9.53□□□□□ -0.88
DEF1YKL054C YGL015CP33199 130 aa9.52□□□□□ -0.88
DEF1YKL054C MAP2P38174 421 aaKnown RBP9.47□□□□□ -0.89
DEF1YKL054C UBP10P53874 792 aaPredicted RBP9.44□□□□□ -0.9
DEF1YKL054C ABP1P15891 592 aaKnown RBP9.43□□□□□ -0.9
DEF1YKL054C SCY1P53009 804 aa9.4□□□□□ -0.9
DEF1YKL054C DMA2P53924 522 aa9.4□□□□□ -0.91
DEF1YKL054C AI2P03876 854 aa9.39□□□□□ -0.91
DEF1YKL054C ARP8Q12386 881 aaKnown RBP RIP-Chip data9.39□□□□□ -0.91not detected
DEF1YKL054C EPS1P40557 701 aa9.37□□□□□ -0.91
DEF1YKL054C PSD2P53037 1138 aaKnown RBP9.35□□□□□ -0.91
DEF1YKL054C BDF1P35817 686 aa9.33□□□□□ -0.92
DEF1YKL054C CST9Q06032 482 aa9.29□□□□□ -0.92
DEF1YKL054C MGA2P40578 1113 aa9.28□□□□□ -0.92
DEF1YKL054C BBC1P47068 1157 aa9.27□□□□□ -0.93
DEF1YKL054C IFH1P39520 1085 aa9.24□□□□□ -0.93
DEF1YKL054C RPN1P38764 993 aaKnown RBP9.2□□□□□ -0.94
DEF1YKL054C SLX5P32828 619 aaKnown RBP9.2□□□□□ -0.94
DEF1YKL054C RLF2Q12495 606 aa9.19□□□□□ -0.94
DEF1YKL054C MRM1P25270 412 aa9.09□□□□□ -0.95
DEF1YKL054C RCR1P38212 213 aa9.02□□□□□ -0.97
DEF1YKL054C NAP1P25293 417 aaKnown RBP9.01□□□□□ -0.97
DEF1YKL054C CKB1P43639 278 aa9□□□□□ -0.97
DEF1YKL054C TGL3P40308 642 aa8.99□□□□□ -0.97
DEF1YKL054C ORC1P54784 914 aaPredicted RBP8.99□□□□□ -0.97
DEF1YKL054C TIF4632P39936 914 aaKnown RBP8.99□□□□□ -0.97
DEF1YKL054C IOC4Q04213 475 aa8.97□□□□□ -0.97
DEF1YKL054C RTG3P38165 486 aa8.93□□□□□ -0.98
DEF1YKL054C RAM2P29703 316 aa8.93□□□□□ -0.98
DEF1YKL054C VPS29P38759 282 aa8.93□□□□□ -0.98
DEF1YKL054C AIM44Q99299 758 aa8.91□□□□□ -0.98
DEF1YKL054C NSR1P27476 414 aaKnown RBP RIP-Chip data8.86□□□□□ -0.99not detected
DEF1YKL054C STS1P38637 319 aa8.81□□□□□ -1
DEF1YKL054C NOP8Q08287 484 aaPredicted RBP8.8□□□□□ -1
DEF1YKL054C YMR1P47147 688 aaKnown RBP RIP-Chip data8.79□□□□□ -1not detected
DEF1YKL054C MST1P07236 462 aa8.77□□□□□ -1.01
DEF1YKL054C YAP5P40574 245 aa8.77□□□□□ -1.01
DEF1YKL054C YML020WQ03722 664 aa8.77□□□□□ -1.01
DEF1YKL054C SPB4P25808 606 aaPredicted RBP8.77□□□□□ -1.01
DEF1YKL054C YOR238WQ08634 303 aa8.77□□□□□ -1.01
DEF1YKL054C DBP1P24784 617 aaKnown RBP8.76□□□□□ -1.01
DEF1YKL054C YPR148CQ06523 435 aa8.76□□□□□ -1.01
DEF1YKL054C MAK11P20484 414 aaKnown RBP8.75□□□□□ -1.01
DEF1YKL054C YFR006WP43590 535 aa8.74□□□□□ -1.01
DEF1YKL054C PIB1Q06651 286 aa8.73□□□□□ -1.01
DEF1YKL054C KIN1P13185 1064 aa8.69□□□□□ -1.02
DEF1YKL054C DSF2P38213 736 aa8.66□□□□□ -1.02
DEF1YKL054C SET1P38827 1080 aaKnown RBP8.65□□□□□ -1.02
DEF1YKL054C VPS70P47161 811 aa8.65□□□□□ -1.02
DEF1YKL054C COQ8P27697 501 aa8.64□□□□□ -1.03
DEF1YKL054C EDS1P38073 919 aa8.64□□□□□ -1.03
DEF1YKL054C YNR021WP53723 404 aaKnown RBP8.62□□□□□ -1.03
DEF1YKL054C VMA1P17255 1071 aaKnown RBP8.61□□□□□ -1.03
DEF1YKL054C SLX8P40072 274 aa8.6□□□□□ -1.03
DEF1YKL054C MIF2P35201 549 aa8.58□□□□□ -1.04
DEF1YKL054C GUA1P38625 525 aaKnown RBP8.55□□□□□ -1.04
DEF1YKL054C AIM7Q12156 149 aa8.55□□□□□ -1.04
DEF1YKL054C SAM3Q08986 587 aa8.53□□□□□ -1.04
DEF1YKL054C PTC3P34221 468 aaKnown RBP8.53□□□□□ -1.04
DEF1YKL054C GEF1P37020 779 aa8.53□□□□□ -1.04
Retrieved 100 of 5,963 RNA–protein pairs in 14.2 ms