RNA–Protein interactions for RNA: YDL164C

CDC9, Transcript of DNA ligase found in the nucleus and mitochondria, yeast

Gene CDC9, Length 2,268 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CDC9	YDL164C	UTR1	P21373	530 aa		4.07	□□□□□ -1.76
CDC9	YDL164C	CLB2	P24869	491 aa		4.07	□□□□□ -1.76
CDC9	YDL164C	PBN1	P25580	416 aa		4.07	□□□□□ -1.76
CDC9	YDL164C	TAF14	P35189	244 aa		4.07	□□□□□ -1.76
CDC9	YDL164C	SPT10	P35208	640 aa		4.07	□□□□□ -1.76
CDC9	YDL164C	KDX1	P36005	433 aa		4.07	□□□□□ -1.76
CDC9	YDL164C	MAK5	P38112	773 aa	Predicted RBP	4.07	□□□□□ -1.76
CDC9	YDL164C	LDB7	P38210	180 aa		4.07	□□□□□ -1.76
CDC9	YDL164C	ERV46	P39727	415 aa		4.07	□□□□□ -1.76
CDC9	YDL164C	LYS20	P48570	428 aa	Known RBP	4.07	□□□□□ -1.76
CDC9	YDL164C	BIO4	P53630	237 aa		4.07	□□□□□ -1.76
CDC9	YDL164C	TAF12	Q03761	539 aa		4.07	□□□□□ -1.76
CDC9	YDL164C	ARO10	Q06408	635 aa		4.07	□□□□□ -1.76
CDC9	YDL164C	SDO1	Q07953	250 aa	Known RBP	4.07	□□□□□ -1.76
CDC9	YDL164C	LSP1	Q12230	341 aa	Known RBP	4.07	□□□□□ -1.76
CDC9	YDL164C	YDR215C	Q12240	137 aa		4.07	□□□□□ -1.76
CDC9	YDL164C	RAV1	P47104	1357 aa		4.06	□□□□□ -1.76
CDC9	YDL164C	RAD3	P06839	778 aa		4.06	□□□□□ -1.76
CDC9	YDL164C	RPL35A	P0CX84	120 aa	Known RBP	4.06	□□□□□ -1.76
CDC9	YDL164C	RPL35B	P0CX85	120 aa	Known RBP	4.06	□□□□□ -1.76
CDC9	YDL164C	RIB1	P38066	345 aa		4.06	□□□□□ -1.76
CDC9	YDL164C	RTC2	P38279	296 aa		4.06	□□□□□ -1.76
CDC9	YDL164C	MIT1	P40002	666 aa		4.06	□□□□□ -1.76
CDC9	YDL164C	ZPR1	P53303	486 aa	Known RBP	4.06	□□□□□ -1.76
CDC9	YDL164C	NUP116	Q02630	1113 aa		4.06	□□□□□ -1.76
CDC9	YDL164C	ECM30	Q06673	1274 aa		4.06	□□□□□ -1.76
CDC9	YDL164C	SYO1	Q07395	620 aa		4.06	□□□□□ -1.76
CDC9	YDL164C	THP1	Q08231	455 aa		4.06	□□□□□ -1.76
CDC9	YDL164C	MES1	P00958	751 aa	Known RBP	4.06	□□□□□ -1.76
CDC9	YDL164C	MET3	P08536	511 aa		4.06	□□□□□ -1.76
CDC9	YDL164C	TCP1	P12612	559 aa	Known RBP	4.06	□□□□□ -1.76
CDC9	YDL164C	NUP1	P20676	1076 aa		4.06	□□□□□ -1.76
CDC9	YDL164C	MXR2	P25566	168 aa		4.06	□□□□□ -1.76
CDC9	YDL164C	MSK1	P32048	576 aa		4.06	□□□□□ -1.76
CDC9	YDL164C	OLA1	P38219	394 aa	Known RBP	4.06	□□□□□ -1.76
CDC9	YDL164C	URA8	P38627	578 aa	Predicted RBP	4.06	□□□□□ -1.76
CDC9	YDL164C	PAC11	P40960	533 aa		4.06	□□□□□ -1.76
CDC9	YDL164C	NUP53	Q03790	475 aa		4.06	□□□□□ -1.76
CDC9	YDL164C	EMI2	Q04409	500 aa	Known RBP	4.06	□□□□□ -1.76
CDC9	YDL164C	YMR310C	Q04867	317 aa	Predicted RBP	4.06	□□□□□ -1.76
CDC9	YDL164C	CMS1	Q07897	291 aa	Known RBP	4.06	□□□□□ -1.76
CDC9	YDL164C	PEX27	Q08580	376 aa		4.06	□□□□□ -1.76
CDC9	YDL164C	YOS9	Q99220	542 aa		4.06	□□□□□ -1.76
CDC9	YDL164C	RAD9	P14737	1309 aa		4.06	□□□□□ -1.76
CDC9	YDL164C	SAL1	D6W196	494 aa		4.05	□□□□□ -1.76
CDC9	YDL164C	RAD1	P06777	1100 aa		4.05	□□□□□ -1.76
CDC9	YDL164C	CDC33	P07260	213 aa	Known RBP	4.05	□□□□□ -1.76
CDC9	YDL164C	OSM1	P21375	501 aa	Known RBP	4.05	□□□□□ -1.76
CDC9	YDL164C	MAK32	P23060	363 aa		4.05	□□□□□ -1.76
CDC9	YDL164C	MEI5	P32489	222 aa		4.05	□□□□□ -1.76
CDC9	YDL164C	SKT5	P34226	696 aa		4.05	□□□□□ -1.76
CDC9	YDL164C	PFS1	P38872	237 aa		4.05	□□□□□ -1.76
CDC9	YDL164C	CCT4	P39078	528 aa	Known RBP	4.05	□□□□□ -1.76
CDC9	YDL164C	DSN1	P40568	576 aa		4.05	□□□□□ -1.76
CDC9	YDL164C	TRS85	P46944	698 aa		4.05	□□□□□ -1.76
CDC9	YDL164C	BNA3	P47039	444 aa	Known RBP	4.05	□□□□□ -1.76
CDC9	YDL164C	YNL146W	P53906	100 aa		4.05	□□□□□ -1.76
CDC9	YDL164C	RPM2	Q02773	1202 aa		4.05	□□□□□ -1.76
CDC9	YDL164C	PDR8	Q06149	701 aa		4.05	□□□□□ -1.76
CDC9	YDL164C	MON2	P48563	1636 aa	Predicted RBP	4.05	□□□□□ -1.76
CDC9	YDL164C	RPL24A	P04449	155 aa	Known RBP	4.05	□□□□□ -1.76
CDC9	YDL164C	ZRC1	P20107	442 aa		4.05	□□□□□ -1.76
CDC9	YDL164C	RRT12	P25381	491 aa		4.05	□□□□□ -1.76
CDC9	YDL164C	SHP1	P34223	423 aa		4.05	□□□□□ -1.76
CDC9	YDL164C	RRP1	P35178	278 aa	Predicted RBP	4.05	□□□□□ -1.76
CDC9	YDL164C	DOA1	P36037	715 aa		4.05	□□□□□ -1.76
CDC9	YDL164C	PRS4	P38063	326 aa	Predicted RBP	4.05	□□□□□ -1.76
CDC9	YDL164C	CBR1	P38626	284 aa	Known RBP	4.05	□□□□□ -1.76
CDC9	YDL164C	LNP1	P38878	278 aa		4.05	□□□□□ -1.76
CDC9	YDL164C	FMP52	P40008	231 aa		4.05	□□□□□ -1.76
CDC9	YDL164C	YFL015C	P43578	164 aa		4.05	□□□□□ -1.76
CDC9	YDL164C	GLG2	P47011	380 aa		4.05	□□□□□ -1.76
CDC9	YDL164C	ABM1	P47146	123 aa		4.05	□□□□□ -1.76
CDC9	YDL164C	YJR154W	P47181	346 aa		4.05	□□□□□ -1.76
CDC9	YDL164C	YGR067C	P53243	804 aa		4.05	□□□□□ -1.76
CDC9	YDL164C	ASI1	P54074	624 aa		4.05	□□□□□ -1.76
CDC9	YDL164C	YPL068C	Q02749	293 aa		4.05	□□□□□ -1.76
CDC9	YDL164C	ATG26	Q06321	1198 aa		4.05	□□□□□ -1.76
CDC9	YDL164C	MCA1	Q08601	432 aa		4.05	□□□□□ -1.76
CDC9	YDL164C	MSH5	Q12175	901 aa		4.05	□□□□□ -1.76
CDC9	YDL164C	FSH3	Q99369	266 aa		4.05	□□□□□ -1.76
CDC9	YDL164C	TRM732	Q03496	1420 aa		4.04	□□□□□ -1.76
CDC9	YDL164C	CLN3	P13365	580 aa		4.04	□□□□□ -1.76
CDC9	YDL164C	CTR86	P25355	563 aa		4.04	□□□□□ -1.76
CDC9	YDL164C	ATG7	P38862	630 aa		4.04	□□□□□ -1.76
CDC9	YDL164C	YIL060W	P40519	144 aa		4.04	□□□□□ -1.76
CDC9	YDL164C	TDA10	P42938	290 aa		4.04	□□□□□ -1.76
CDC9	YDL164C	YGR210C	P42942	411 aa		4.04	□□□□□ -1.76
CDC9	YDL164C	MRX5	P47007	382 aa		4.04	□□□□□ -1.76
CDC9	YDL164C	TAF6	P53040	516 aa		4.04	□□□□□ -1.76
CDC9	YDL164C	RRN9	P53437	365 aa		4.04	□□□□□ -1.76
CDC9	YDL164C	DIA1	P54005	336 aa		4.04	□□□□□ -1.76
CDC9	YDL164C	GIP3	Q03016	1276 aa		4.04	□□□□□ -1.76
CDC9	YDL164C	GCN5	Q03330	439 aa		4.04	□□□□□ -1.76
CDC9	YDL164C	YMR209C	Q03648	457 aa		4.04	□□□□□ -1.76
CDC9	YDL164C	HSP31	Q04432	237 aa		4.04	□□□□□ -1.76
CDC9	YDL164C	NAT4	Q04751	285 aa		4.04	□□□□□ -1.76
CDC9	YDL164C	RTT103	Q05543	409 aa		4.04	□□□□□ -1.76
CDC9	YDL164C	COQ11	Q05892	277 aa		4.04	□□□□□ -1.76
CDC9	YDL164C	BUR2	Q05949	395 aa		4.04	□□□□□ -1.76

Retrieved 100 of 5,963 RNA–protein pairs in 19.7 ms