RNA–Protein interactions for RNA: YDL164C

CDC9, Transcript of DNA ligase found in the nucleus and mitochondria, yeastyeast

Gene CDC9, Length 2,268 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
CDC9YDL164C DRS1P32892 752 aaKnown RBP9.59□□□□□ -0.87
CDC9YDL164C MTC1P47018 478 aaKnown RBP9.07□□□□□ -0.96
CDC9YDL164C TFA1P36100 482 aa8.93□□□□□ -0.98
CDC9YDL164C BFR2Q06631 534 aaKnown RBP8.66□□□□□ -1.02
CDC9YDL164C AVT3P36062 692 aa8.17□□□□□ -1.1
CDC9YDL164C RQC2Q12532 1038 aaKnown RBP8.12□□□□□ -1.11
CDC9YDL164C TAF7Q05021 590 aa8.08□□□□□ -1.12
CDC9YDL164C DIP2Q12220 943 aaPredicted RBP7.87□□□□□ -1.15
CDC9YDL164C DMA1P38823 416 aa7.74□□□□□ -1.17
CDC9YDL164C LEO1P38439 464 aa7.48□□□□□ -1.21
CDC9YDL164C FAP1P53971 965 aa7.37□□□□□ -1.23
CDC9YDL164C ISW2Q08773 1120 aa7.35□□□□□ -1.23
CDC9YDL164C RSE1Q04693 1361 aaKnown RBP7.29□□□□□ -1.24
CDC9YDL164C PRI1P10363 409 aa7.29□□□□□ -1.24
CDC9YDL164C RPG1P38249 964 aaKnown RBP7.25□□□□□ -1.25
CDC9YDL164C ABP1P15891 592 aaKnown RBP7.18□□□□□ -1.26
CDC9YDL164C PTP3P40048 928 aa7.14□□□□□ -1.27
CDC9YDL164C AAD16Q02895 342 aa7.12□□□□□ -1.27
CDC9YDL164C LEU3P08638 886 aa7.09□□□□□ -1.27
CDC9YDL164C SAS10Q12136 610 aaPredicted RBP7.07□□□□□ -1.28
CDC9YDL164C RPL17AP05740 184 aaKnown RBP7.01□□□□□ -1.29
CDC9YDL164C RPL17BP46990 184 aaKnown RBP7.01□□□□□ -1.29
CDC9YDL164C DMA2P53924 522 aa7.01□□□□□ -1.29
CDC9YDL164C REB1P21538 810 aa6.92□□□□□ -1.3
CDC9YDL164C IFH1P39520 1085 aa6.89□□□□□ -1.31
CDC9YDL164C PRY3P47033 881 aa6.89□□□□□ -1.31
CDC9YDL164C SSP1P38871 571 aa6.88□□□□□ -1.31
CDC9YDL164C TSR3Q12094 313 aaKnown RBP6.88□□□□□ -1.31
CDC9YDL164C RIM101P33400 625 aa6.86□□□□□ -1.31
CDC9YDL164C SPT21P35209 758 aa6.8□□□□□ -1.32
CDC9YDL164C OXP1P28273 1286 aa6.75□□□□□ -1.33
CDC9YDL164C RPN1P38764 993 aaKnown RBP6.73□□□□□ -1.33
CDC9YDL164C ORC1P54784 914 aaPredicted RBP6.73□□□□□ -1.33
CDC9YDL164C IOC4Q04213 475 aa6.73□□□□□ -1.33
CDC9YDL164C RLF2Q12495 606 aa6.73□□□□□ -1.33
CDC9YDL164C YLR271WQ06152 274 aa6.7□□□□□ -1.34
CDC9YDL164C NAP1P25293 417 aaKnown RBP6.62□□□□□ -1.35
CDC9YDL164C MRPL32P25348 183 aa6.6□□□□□ -1.35
CDC9YDL164C CKB1P43639 278 aa6.6□□□□□ -1.35
CDC9YDL164C YAH1Q12184 172 aaKnown RBP6.6□□□□□ -1.35
CDC9YDL164C YCK3P39962 524 aa6.59□□□□□ -1.35
CDC9YDL164C CST9Q06032 482 aa6.58□□□□□ -1.36
CDC9YDL164C YKR023WP36119 530 aaKnown RBP6.57□□□□□ -1.36
CDC9YDL164C HAA1Q12753 694 aaKnown RBP6.53□□□□□ -1.36
CDC9YDL164C MGA2P40578 1113 aa6.52□□□□□ -1.37
CDC9YDL164C NOP8Q08287 484 aaPredicted RBP6.52□□□□□ -1.37
CDC9YDL164C YML020WQ03722 664 aa6.5□□□□□ -1.37
CDC9YDL164C ARP8Q12386 881 aaKnown RBP RIP-Chip data6.48□□□□□ -1.37not detected
CDC9YDL164C YPR148CQ06523 435 aa6.47□□□□□ -1.37
CDC9YDL164C TFC8Q12308 588 aa6.44□□□□□ -1.38
CDC9YDL164C SPB4P25808 606 aaPredicted RBP6.43□□□□□ -1.38
CDC9YDL164C RAM2P29703 316 aa6.43□□□□□ -1.38
CDC9YDL164C KIN1P13185 1064 aa6.42□□□□□ -1.38
CDC9YDL164C CDC27P38042 758 aa6.42□□□□□ -1.38
CDC9YDL164C HOP09932 586 aa6.41□□□□□ -1.38
CDC9YDL164C PSD2P53037 1138 aaKnown RBP6.4□□□□□ -1.38
CDC9YDL164C DSF2P38213 736 aa6.39□□□□□ -1.39
CDC9YDL164C SET1P38827 1080 aaKnown RBP6.39□□□□□ -1.39
CDC9YDL164C VPS70P47161 811 aa6.39□□□□□ -1.39
CDC9YDL164C GUA1P38625 525 aaKnown RBP6.37□□□□□ -1.39
CDC9YDL164C AIM44Q99299 758 aa6.37□□□□□ -1.39
CDC9YDL164C DCD1P06773 312 aa6.37□□□□□ -1.39
CDC9YDL164C YIL055CP40523 627 aaKnown RBP6.37□□□□□ -1.39
CDC9YDL164C MAM3Q12296 706 aa6.37□□□□□ -1.39
CDC9YDL164C SLX8P40072 274 aa6.35□□□□□ -1.39
CDC9YDL164C RSM7P47150 247 aa6.35□□□□□ -1.39
CDC9YDL164C RCR1P38212 213 aa6.33□□□□□ -1.4
CDC9YDL164C GLC3P32775 704 aa6.32□□□□□ -1.4
CDC9YDL164C YNR021WP53723 404 aaKnown RBP6.31□□□□□ -1.4
CDC9YDL164C SUB2Q07478 446 aaKnown RBP6.31□□□□□ -1.4
CDC9YDL164C MRX12P47084 519 aa6.29□□□□□ -1.4
CDC9YDL164C NUP42P49686 430 aaKnown RBP6.29□□□□□ -1.4
CDC9YDL164C PBS2P08018 668 aa6.28□□□□□ -1.4
CDC9YDL164C DIT2P21595 489 aa6.28□□□□□ -1.4
CDC9YDL164C GEF1P37020 779 aa6.27□□□□□ -1.41
CDC9YDL164C AIM7Q12156 149 aa6.27□□□□□ -1.41
CDC9YDL164C BCH2P36122 765 aa6.25□□□□□ -1.41
CDC9YDL164C SSA1P10591 642 aaKnown RBP6.24□□□□□ -1.41
CDC9YDL164C URN1Q06525 465 aaKnown RBP6.23□□□□□ -1.41
CDC9YDL164C PKC1P24583 1151 aa6.23□□□□□ -1.41
CDC9YDL164C PAM1P37304 830 aaKnown RBP6.22□□□□□ -1.41
CDC9YDL164C AI2P03876 854 aa6.22□□□□□ -1.41
CDC9YDL164C GLN1P32288 370 aaKnown RBP6.22□□□□□ -1.41
CDC9YDL164C TFB3Q03290 321 aa6.22□□□□□ -1.41
CDC9YDL164C ATG36P46983 293 aa6.21□□□□□ -1.42
CDC9YDL164C YGL015CP33199 130 aa6.18□□□□□ -1.42
CDC9YDL164C IES2P40154 320 aa6.18□□□□□ -1.42
CDC9YDL164C UBP10P53874 792 aaPredicted RBP6.17□□□□□ -1.42
CDC9YDL164C HPC2Q01448 625 aa6.17□□□□□ -1.42
CDC9YDL164C SEN54Q02825 467 aaPredicted RBP6.16□□□□□ -1.42
CDC9YDL164C MAP2P38174 421 aaKnown RBP6.14□□□□□ -1.43
CDC9YDL164C ATG32P40458 529 aa6.13□□□□□ -1.43
CDC9YDL164C EPS1P40557 701 aa6.13□□□□□ -1.43
CDC9YDL164C BBC1P47068 1157 aa6.13□□□□□ -1.43
CDC9YDL164C LAM6Q08001 693 aa6.13□□□□□ -1.43
CDC9YDL164C MAK11P20484 414 aaKnown RBP6.11□□□□□ -1.43
CDC9YDL164C BIM1P40013 344 aa6.11□□□□□ -1.43
CDC9YDL164C SCY1P53009 804 aa6.11□□□□□ -1.43
CDC9YDL164C NOB1Q08444 459 aaKnown RBP6.11□□□□□ -1.43
CDC9YDL164C ERG12P07277 443 aa6.1□□□□□ -1.43
Retrieved 100 of 5,963 RNA–protein pairs in 9.3 ms