Protein–RNA interactions for Protein: P38210

LDB7, Chromatin structure-remodeling complex protein RSC14, yeastyeast

Predictions only

Length 180 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
LDB7P38210 YML009W-BYML009W-B 477 nt20.47■□□□□ 0.87
LDB7P38210 NSR1YGR159C 1245 nt20.3■□□□□ 0.84
LDB7P38210 NOP1YDL014W 984 nt19.88■□□□□ 0.77
LDB7P38210 YKL036CYKL036C 393 nt18.33■□□□□ 0.52
LDB7P38210 MDJ1YFL016C 1536 nt18.08■□□□□ 0.48
LDB7P38210 Q0297Q0297 156 nt17.37■□□□□ 0.37
LDB7P38210 SRX1YKL086W 384 nt17.35■□□□□ 0.37
LDB7P38210 YJL027CYJL027C 417 nt17.12■□□□□ 0.33
LDB7P38210 SCS3YGL126W 1143 nt16.68■□□□□ 0.26
LDB7P38210 YCR051WYCR051W 669 nt16.49■□□□□ 0.23
LDB7P38210 DBP2YNL112W 1641 nt15.96■□□□□ 0.15
LDB7P38210 YOL085CYOL085C 342 nt15.87■□□□□ 0.13
LDB7P38210 TRN1tP(UGG)A 72 nt15.71■□□□□ 0.11
LDB7P38210 SUF9tP(UGG)F 72 nt15.71■□□□□ 0.11
LDB7P38210 SUF8tP(UGG)H 72 nt15.71■□□□□ 0.11
LDB7P38210 tP(UGG)LtP(UGG)L 72 nt15.71■□□□□ 0.11
LDB7P38210 SUF7tP(UGG)M 72 nt15.71■□□□□ 0.11
LDB7P38210 tP(UGG)N1tP(UGG)N1 72 nt15.71■□□□□ 0.11
LDB7P38210 tP(UGG)N2tP(UGG)N2 72 nt15.71■□□□□ 0.11
LDB7P38210 tP(UGG)O1tP(UGG)O1 72 nt15.71■□□□□ 0.11
LDB7P38210 SUF11tP(UGG)O2 72 nt15.71■□□□□ 0.11
LDB7P38210 PKP1YIL042C 1185 nt15.65■□□□□ 0.1
LDB7P38210 RPP1BYDL130W 321 nt15.6■□□□□ 0.09
LDB7P38210 CCC1YLR220W 969 nt15.56■□□□□ 0.08
LDB7P38210 YBR190WYBR190W 312 nt15.39■□□□□ 0.05
LDB7P38210 RTC3YHR087W 336 nt15.08■□□□□ 0
LDB7P38210 RVS167YDR388W 1449 nt15.04■□□□□ -0
LDB7P38210 SCJ1YMR214W 1134 nt14.96□□□□□ -0.01
LDB7P38210 PET122YER153C 765 nt14.92□□□□□ -0.02
LDB7P38210 ATS1YAL020C 1002 nt14.9□□□□□ -0.02
LDB7P38210 tP(UGG)O3tP(UGG)O3 72 nt14.85□□□□□ -0.03
LDB7P38210 SCR1SCR1 522 nt14.77□□□□□ -0.05
LDB7P38210 SHR5YOL110W 714 nt14.5□□□□□ -0.09
LDB7P38210 RRN5YLR141W 1092 nt14.47□□□□□ -0.09
LDB7P38210 YDJ1YNL064C 1230 nt14.35□□□□□ -0.11
LDB7P38210 YER088W-BYER088W-B 147 nt14.2□□□□□ -0.14
LDB7P38210 RSB1YOR049C 1065 nt14.2□□□□□ -0.14
LDB7P38210 URN1YPR152C 1398 nt14.1□□□□□ -0.15
LDB7P38210 DEP1YAL013W 1218 nt14.1□□□□□ -0.15
LDB7P38210 GAR1YHR089C 618 nt14.06□□□□□ -0.16
LDB7P38210 PUT4YOR348C 1884 nt13.98□□□□□ -0.17
LDB7P38210 RPN10YHR200W 807 nt13.9□□□□□ -0.18
LDB7P38210 OPI9YLR338W 858 nt13.88□□□□□ -0.19
LDB7P38210 YNL208WYNL208W 600 nt13.87□□□□□ -0.19
LDB7P38210 SAH1YER043C 1350 nt13.81□□□□□ -0.2
LDB7P38210 PST2YDR032C 597 nt13.79□□□□□ -0.2
LDB7P38210 ARE1YCR048W 1833 nt13.74□□□□□ -0.21
LDB7P38210 TIR1YER011W 765 nt13.58□□□□□ -0.24
LDB7P38210 YHR049C-AYHR049C-A 297 nt13.58□□□□□ -0.24
LDB7P38210 POA1YBR022W 534 nt13.55□□□□□ -0.24
LDB7P38210 PUN1YLR414C 792 nt13.49□□□□□ -0.25
LDB7P38210 YJR018WYJR018W 363 nt13.44□□□□□ -0.26
LDB7P38210 SSA1YAL005C 1929 nt13.42□□□□□ -0.26
LDB7P38210 PTC2YER089C 1395 nt13.32□□□□□ -0.28
LDB7P38210 BUD23YCR047C 828 nt13.27□□□□□ -0.29
LDB7P38210 YKL097CYKL097C 411 nt13.27□□□□□ -0.29
LDB7P38210 BSC6YOL137W 1494 nt13.26□□□□□ -0.29
LDB7P38210 SHU1YHL006C 453 nt13.25□□□□□ -0.29
LDB7P38210 YJR120WYJR120W 351 nt13.23□□□□□ -0.29
LDB7P38210 RPP2BYDR382W 333 nt13.19□□□□□ -0.3
LDB7P38210 SRB2YHR041C 633 nt13.19□□□□□ -0.3
LDB7P38210 NAB2YGL122C 1578 nt13.15□□□□□ -0.3
LDB7P38210 YAL037C-BYAL037C-B 975 nt13.05□□□□□ -0.32
LDB7P38210 DAL1YIR027C 1383 nt12.99□□□□□ -0.33
LDB7P38210 WWM1YFL010C 636 nt12.99□□□□□ -0.33
LDB7P38210 FIS1YIL065C 468 nt12.99□□□□□ -0.33
LDB7P38210 SSA3YBL075C 1950 nt12.98□□□□□ -0.33
LDB7P38210 FPR4YLR449W 1179 nt12.98□□□□□ -0.33
LDB7P38210 INM2YDR287W 879 nt12.95□□□□□ -0.34
LDB7P38210 YGR021WYGR021W 873 nt12.92□□□□□ -0.34
LDB7P38210 BDH2YAL061W 1254 nt12.91□□□□□ -0.34
LDB7P38210 PHO4YFR034C 939 nt12.87□□□□□ -0.35
LDB7P38210 HOM6YJR139C 1080 nt12.86□□□□□ -0.35
LDB7P38210 YBL100CYBL100C 315 nt12.86□□□□□ -0.35
LDB7P38210 MNP1YGL068W 585 nt12.83□□□□□ -0.36
LDB7P38210 YFL021C-AYFL021C-A 855 nt12.78□□□□□ -0.36
LDB7P38210 LSM3YLR438C-A 270 nt12.72□□□□□ -0.37
LDB7P38210 YOR139CYOR139C 393 nt12.72□□□□□ -0.37
LDB7P38210 FUN26YAL022C 1554 nt12.69□□□□□ -0.38
LDB7P38210 RKM5YLR137W 1104 nt12.68□□□□□ -0.38
LDB7P38210 TRM9YML014W 840 nt12.66□□□□□ -0.38
LDB7P38210 NPL3YDR432W 1245 nt12.65□□□□□ -0.38
LDB7P38210 YPS1YLR120C 1710 nt12.6□□□□□ -0.39
LDB7P38210 YOL037CYOL037C 354 nt12.6□□□□□ -0.39
LDB7P38210 SPT5YML010W 3192 nt12.59□□□□□ -0.39
LDB7P38210 CCT6YDR188W 1641 nt12.54□□□□□ -0.4
LDB7P38210 YDR095CYDR095C 411 nt12.53□□□□□ -0.4
LDB7P38210 ALF1YNL148C 765 nt12.53□□□□□ -0.4
LDB7P38210 YHR165W-AYHR165W-A 312 nt12.48□□□□□ -0.41
LDB7P38210 SUF2tP(AGG)C 72 nt12.44□□□□□ -0.42
LDB7P38210 SUF10tP(AGG)N 72 nt12.44□□□□□ -0.42
LDB7P38210 MEP2YNL142W 1500 nt12.43□□□□□ -0.42
LDB7P38210 SIS1YNL007C 1059 nt12.3□□□□□ -0.44
LDB7P38210 RPP2AYOL039W 321 nt12.29□□□□□ -0.44
LDB7P38210 YLR281CYLR281C 468 nt12.28□□□□□ -0.44
LDB7P38210 WHI5YOR083W 888 nt12.26□□□□□ -0.45
LDB7P38210 DCW1YKL046C 1350 nt12.25□□□□□ -0.45
LDB7P38210 YLR154C-GYLR154C-G 150 nt12.23□□□□□ -0.45
LDB7P38210 PTP1YDL230W 1008 nt12.22□□□□□ -0.45
LDB7P38210 tM(CAU)CtM(CAU)C 72 nt12.22□□□□□ -0.45
Retrieved 100 of 7,029 protein–RNA pairs in 17.2 ms