Protein–RNA interactions for Protein: P06839

RAD3, General transcription and DNA repair factor IIH helicase subunit XPD, yeastyeast

Predictions only

Length 778 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
RAD3P06839 YML009W-BYML009W-B 477 nt20.51■□□□□ 0.87
RAD3P06839 NSR1YGR159C 1245 nt20.21■□□□□ 0.83
RAD3P06839 NOP1YDL014W 984 nt20.16■□□□□ 0.82
RAD3P06839 YKL036CYKL036C 393 nt18.89■□□□□ 0.61
RAD3P06839 MDJ1YFL016C 1536 nt18.33■□□□□ 0.52
RAD3P06839 Q0297Q0297 156 nt17.78■□□□□ 0.44
RAD3P06839 YJL027CYJL027C 417 nt17.65■□□□□ 0.42
RAD3P06839 SRX1YKL086W 384 nt17.62■□□□□ 0.41
RAD3P06839 SCS3YGL126W 1143 nt17.33■□□□□ 0.36
RAD3P06839 YCR051WYCR051W 669 nt16.65■□□□□ 0.26
RAD3P06839 SSA3YBL075C 1950 nt16.37■□□□□ 0.21
RAD3P06839 YOL085CYOL085C 342 nt16.34■□□□□ 0.21
RAD3P06839 DBP2YNL112W 1641 nt16.01■□□□□ 0.15
RAD3P06839 PKP1YIL042C 1185 nt15.96■□□□□ 0.15
RAD3P06839 RPP1BYDL130W 321 nt15.93■□□□□ 0.14
RAD3P06839 SCJ1YMR214W 1134 nt15.88■□□□□ 0.13
RAD3P06839 TRN1tP(UGG)A 72 nt15.73■□□□□ 0.11
RAD3P06839 SUF9tP(UGG)F 72 nt15.73■□□□□ 0.11
RAD3P06839 SUF8tP(UGG)H 72 nt15.73■□□□□ 0.11
RAD3P06839 tP(UGG)LtP(UGG)L 72 nt15.73■□□□□ 0.11
RAD3P06839 SUF7tP(UGG)M 72 nt15.73■□□□□ 0.11
RAD3P06839 tP(UGG)N1tP(UGG)N1 72 nt15.73■□□□□ 0.11
RAD3P06839 tP(UGG)N2tP(UGG)N2 72 nt15.73■□□□□ 0.11
RAD3P06839 tP(UGG)O1tP(UGG)O1 72 nt15.73■□□□□ 0.11
RAD3P06839 SUF11tP(UGG)O2 72 nt15.73■□□□□ 0.11
RAD3P06839 YBR190WYBR190W 312 nt15.73■□□□□ 0.11
RAD3P06839 ATS1YAL020C 1002 nt15.61■□□□□ 0.09
RAD3P06839 CCC1YLR220W 969 nt15.46■□□□□ 0.07
RAD3P06839 RTC3YHR087W 336 nt15.34■□□□□ 0.05
RAD3P06839 PET122YER153C 765 nt15.13■□□□□ 0.01
RAD3P06839 SCR1SCR1 522 nt15.09■□□□□ 0.01
RAD3P06839 tP(UGG)O3tP(UGG)O3 72 nt14.97□□□□□ -0.01
RAD3P06839 RVS167YDR388W 1449 nt14.84□□□□□ -0.03
RAD3P06839 PUT4YOR348C 1884 nt14.76□□□□□ -0.05
RAD3P06839 RRN5YLR141W 1092 nt14.72□□□□□ -0.05
RAD3P06839 YDJ1YNL064C 1230 nt14.55□□□□□ -0.08
RAD3P06839 RSB1YOR049C 1065 nt14.5□□□□□ -0.09
RAD3P06839 YER088W-BYER088W-B 147 nt14.46□□□□□ -0.09
RAD3P06839 PST2YDR032C 597 nt14.42□□□□□ -0.1
RAD3P06839 SHR5YOL110W 714 nt14.42□□□□□ -0.1
RAD3P06839 ARE1YCR048W 1833 nt14.33□□□□□ -0.12
RAD3P06839 POA1YBR022W 534 nt14.23□□□□□ -0.13
RAD3P06839 URN1YPR152C 1398 nt14.18□□□□□ -0.14
RAD3P06839 SAH1YER043C 1350 nt14.16□□□□□ -0.14
RAD3P06839 SSA4YER103W 1929 nt14.15□□□□□ -0.14
RAD3P06839 YHR049C-AYHR049C-A 297 nt14.13□□□□□ -0.15
RAD3P06839 OPI9YLR338W 858 nt14.08□□□□□ -0.16
RAD3P06839 SPT5YML010W 3192 nt14.05□□□□□ -0.16
RAD3P06839 GAR1YHR089C 618 nt14.05□□□□□ -0.16
RAD3P06839 BSC6YOL137W 1494 nt14.05□□□□□ -0.16
RAD3P06839 DEP1YAL013W 1218 nt14.02□□□□□ -0.17
RAD3P06839 YKL097CYKL097C 411 nt14□□□□□ -0.17
RAD3P06839 RPN10YHR200W 807 nt13.79□□□□□ -0.2
RAD3P06839 PAC11YDR488C 1602 nt13.75□□□□□ -0.21
RAD3P06839 BUD23YCR047C 828 nt13.73□□□□□ -0.21
RAD3P06839 BDF1YLR399C 2061 nt13.73□□□□□ -0.21
RAD3P06839 SHU1YHL006C 453 nt13.71□□□□□ -0.21
RAD3P06839 YNL208WYNL208W 600 nt13.71□□□□□ -0.21
RAD3P06839 PUN1YLR414C 792 nt13.66□□□□□ -0.22
RAD3P06839 TIR1YER011W 765 nt13.61□□□□□ -0.23
RAD3P06839 PTC2YER089C 1395 nt13.6□□□□□ -0.23
RAD3P06839 TAT1YBR069C 1860 nt13.5□□□□□ -0.25
RAD3P06839 NAB2YGL122C 1578 nt13.49□□□□□ -0.25
RAD3P06839 YJR018WYJR018W 363 nt13.48□□□□□ -0.25
RAD3P06839 NVJ2YPR091C 2313 nt13.45□□□□□ -0.26
RAD3P06839 YOR139CYOR139C 393 nt13.38□□□□□ -0.27
RAD3P06839 SSA1YAL005C 1929 nt13.36□□□□□ -0.27
RAD3P06839 YAL037C-BYAL037C-B 975 nt13.32□□□□□ -0.28
RAD3P06839 FIS1YIL065C 468 nt13.31□□□□□ -0.28
RAD3P06839 MEP2YNL142W 1500 nt13.23□□□□□ -0.29
RAD3P06839 YJR120WYJR120W 351 nt13.23□□□□□ -0.29
RAD3P06839 DAL1YIR027C 1383 nt13.2□□□□□ -0.3
RAD3P06839 NPL3YDR432W 1245 nt13.17□□□□□ -0.3
RAD3P06839 SRB2YHR041C 633 nt13.17□□□□□ -0.3
RAD3P06839 FPR4YLR449W 1179 nt13.16□□□□□ -0.3
RAD3P06839 YGR021WYGR021W 873 nt13.14□□□□□ -0.31
RAD3P06839 PHO4YFR034C 939 nt13.11□□□□□ -0.31
RAD3P06839 HOM6YJR139C 1080 nt13.09□□□□□ -0.31
RAD3P06839 YPS1YLR120C 1710 nt13.05□□□□□ -0.32
RAD3P06839 INM2YDR287W 879 nt13.04□□□□□ -0.32
RAD3P06839 DCW1YKL046C 1350 nt13.04□□□□□ -0.32
RAD3P06839 WWM1YFL010C 636 nt13.03□□□□□ -0.32
RAD3P06839 RPP2BYDR382W 333 nt13.02□□□□□ -0.33
RAD3P06839 YOL037CYOL037C 354 nt13.02□□□□□ -0.33
RAD3P06839 MNP1YGL068W 585 nt12.99□□□□□ -0.33
RAD3P06839 YHR165W-AYHR165W-A 312 nt12.92□□□□□ -0.34
RAD3P06839 FPS1YLL043W 2010 nt12.91□□□□□ -0.34
RAD3P06839 YFL021C-AYFL021C-A 855 nt12.9□□□□□ -0.34
RAD3P06839 YDR095CYDR095C 411 nt12.89□□□□□ -0.35
RAD3P06839 RKM5YLR137W 1104 nt12.89□□□□□ -0.35
RAD3P06839 YBL100CYBL100C 315 nt12.86□□□□□ -0.35
RAD3P06839 tM(CAU)CtM(CAU)C 72 nt12.84□□□□□ -0.35
RAD3P06839 IMT4tM(CAU)E 72 nt12.84□□□□□ -0.35
RAD3P06839 IMT3tM(CAU)J3 72 nt12.84□□□□□ -0.35
RAD3P06839 IMT1tM(CAU)O1 72 nt12.84□□□□□ -0.35
RAD3P06839 IMT2tM(CAU)P 72 nt12.84□□□□□ -0.35
RAD3P06839 YBR220CYBR220C 1683 nt12.83□□□□□ -0.35
RAD3P06839 EMI2YDR516C 1503 nt12.83□□□□□ -0.36
RAD3P06839 BDH2YAL061W 1254 nt12.82□□□□□ -0.36
RAD3P06839 LSM3YLR438C-A 270 nt12.76□□□□□ -0.37
Retrieved 100 of 7,029 protein–RNA pairs in 162.5 ms