RNA–Protein interactions for RNA: YDR261C-D

YDR261C-D, Transcript of Retrotransposon TYA Gag and TYB Pol genes, yeast

Gene YDR261C-D, Length 4,815 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
YDR261C-D	YDR261C-D	CIR2	Q08822	631 aa		5.21	□□□□□ -1.58
YDR261C-D	YDR261C-D	THR4	P16120	514 aa	Known RBP	5.21	□□□□□ -1.58
YDR261C-D	YDR261C-D	KIN3	P22209	435 aa		5.21	□□□□□ -1.58
YDR261C-D	YDR261C-D	VPS9	P54787	451 aa		5.21	□□□□□ -1.58
YDR261C-D	YDR261C-D	VHS3	Q08438	674 aa		5.21	□□□□□ -1.58
YDR261C-D	YDR261C-D	GPN2	Q08726	347 aa	Predicted RBP	5.21	□□□□□ -1.58
YDR261C-D	YDR261C-D	PUS1	Q12211	544 aa	Known RBP	5.21	□□□□□ -1.58
YDR261C-D	YDR261C-D	CTF4	Q01454	927 aa		5.2	□□□□□ -1.58
YDR261C-D	YDR261C-D	CWC21	Q03375	135 aa	Known RBP	5.2	□□□□□ -1.58
YDR261C-D	YDR261C-D	MEF1	P25039	761 aa		5.2	□□□□□ -1.58
YDR261C-D	YDR261C-D	NMD3	P38861	518 aa	Known RBP	5.2	□□□□□ -1.58
YDR261C-D	YDR261C-D	IES3	Q12345	250 aa		5.2	□□□□□ -1.58
YDR261C-D	YDR261C-D	MRC1	P25588	1096 aa		5.2	□□□□□ -1.58
YDR261C-D	YDR261C-D	PAP2	P53632	584 aa	Known RBP	5.2	□□□□□ -1.58
YDR261C-D	YDR261C-D	TMA64	Q04600	565 aa	Known RBP	5.2	□□□□□ -1.58
YDR261C-D	YDR261C-D	MRPL40	P36534	297 aa		5.2	□□□□□ -1.58
YDR261C-D	YDR261C-D	MTW1	P39731	289 aa		5.2	□□□□□ -1.58
YDR261C-D	YDR261C-D	YNL011C	P53980	444 aa		5.2	□□□□□ -1.58
YDR261C-D	YDR261C-D	RPN7	Q06103	429 aa	Known RBP	5.2	□□□□□ -1.58
YDR261C-D	YDR261C-D	UTP14	Q04500	899 aa	Known RBP	5.19	□□□□□ -1.58
YDR261C-D	YDR261C-D	BRR1	Q99177	341 aa	Predicted RBP	5.19	□□□□□ -1.58
YDR261C-D	YDR261C-D	UTP22	P53254	1237 aa	Predicted RBP	5.19	□□□□□ -1.58
YDR261C-D	YDR261C-D	MRP8	P35719	219 aa		5.18	□□□□□ -1.58
YDR261C-D	YDR261C-D	VPS27	P40343	622 aa	Known RBP	5.18	□□□□□ -1.58
YDR261C-D	YDR261C-D	MPH1	P40562	993 aa		5.18	□□□□□ -1.58
YDR261C-D	YDR261C-D	YMR111C	Q04461	462 aa	Predicted RBP	5.18	□□□□□ -1.58
YDR261C-D	YDR261C-D	YTA7	P40340	1379 aa		5.18	□□□□□ -1.58
YDR261C-D	YDR261C-D	PRT1	P06103	763 aa	Known RBP	5.18	□□□□□ -1.58
YDR261C-D	YDR261C-D	KRE33	P53914	1056 aa	Known RBP	5.18	□□□□□ -1.58
YDR261C-D	YDR261C-D	RPC31	P17890	251 aa		5.18	□□□□□ -1.58
YDR261C-D	YDR261C-D	UTP18	P40362	594 aa	Predicted RBP	5.18	□□□□□ -1.58
YDR261C-D	YDR261C-D	DJP1	P40564	432 aa		5.18	□□□□□ -1.58
YDR261C-D	YDR261C-D	CGR1	P53188	120 aa		5.18	□□□□□ -1.58
YDR261C-D	YDR261C-D	PET123	P17558	318 aa		5.18	□□□□□ -1.58
YDR261C-D	YDR261C-D	SPC110	P32380	944 aa		5.18	□□□□□ -1.58
YDR261C-D	YDR261C-D	CUS1	Q02554	436 aa	Predicted RBP	5.18	□□□□□ -1.58
YDR261C-D	YDR261C-D	BRE1	Q07457	700 aa	Known RBP	5.18	□□□□□ -1.58
YDR261C-D	YDR261C-D	HOS2	P53096	452 aa	Predicted RBP	5.17	□□□□□ -1.58
YDR261C-D	YDR261C-D	RPL6A	Q02326	176 aa	Known RBP	5.17	□□□□□ -1.58
YDR261C-D	YDR261C-D	VPS60	Q03390	229 aa		5.17	□□□□□ -1.58
YDR261C-D	YDR261C-D	RIO2	P40160	425 aa	Known RBP	5.17	□□□□□ -1.58
YDR261C-D	YDR261C-D	ARD1	P07347	238 aa	Predicted RBP	5.17	□□□□□ -1.58
YDR261C-D	YDR261C-D	YJL049W	P47048	450 aa		5.17	□□□□□ -1.58
YDR261C-D	YDR261C-D	YRO2	P38079	344 aa		5.16	□□□□□ -1.58
YDR261C-D	YDR261C-D	TY4A-J	P47023	414 aa		5.16	□□□□□ -1.58
YDR261C-D	YDR261C-D	VPS24	P36095	224 aa	Known RBP	5.16	□□□□□ -1.58
YDR261C-D	YDR261C-D	TRZ1	P36159	838 aa	Predicted RBP	5.16	□□□□□ -1.58
YDR261C-D	YDR261C-D	ITC1	P53125	1264 aa		5.16	□□□□□ -1.58
YDR261C-D	YDR261C-D	UBP10	P53874	792 aa	Predicted RBP	5.16	□□□□□ -1.58
YDR261C-D	YDR261C-D	RRB1	Q04225	511 aa	Known RBP	5.16	□□□□□ -1.58
YDR261C-D	YDR261C-D	YBL028C	P38202	106 aa		5.16	□□□□□ -1.58
YDR261C-D	YDR261C-D	NOP14	Q99207	810 aa	Known RBP	5.16	□□□□□ -1.58
YDR261C-D	YDR261C-D	SEC20	P28791	383 aa		5.16	□□□□□ -1.58
YDR261C-D	YDR261C-D	MSS116	P15424	664 aa	Known RBP	5.15	□□□□□ -1.58
YDR261C-D	YDR261C-D	EIS1	Q05050	843 aa	Known RBP	5.15	□□□□□ -1.58
YDR261C-D	YDR261C-D	RUD3	Q12234	484 aa	Known RBP	5.15	□□□□□ -1.58
YDR261C-D	YDR261C-D	SMC1	P32908	1225 aa		5.15	□□□□□ -1.58
YDR261C-D	YDR261C-D	RPT2	P40327	437 aa	Known RBP	5.15	□□□□□ -1.58
YDR261C-D	YDR261C-D	TFB3	Q03290	321 aa		5.15	□□□□□ -1.58
YDR261C-D	YDR261C-D	SSA1	P10591	642 aa	Known RBP	5.15	□□□□□ -1.59
YDR261C-D	YDR261C-D	SSA2	P10592	639 aa	Known RBP	5.15	□□□□□ -1.59
YDR261C-D	YDR261C-D	SWI3	P32591	825 aa		5.15	□□□□□ -1.59
YDR261C-D	YDR261C-D	RAD50	P12753	1312 aa		5.14	□□□□□ -1.59
YDR261C-D	YDR261C-D	NSR1	P27476	414 aa	Known RBP RIP-Chip data	5.14	□□□□□ -1.59	not detected
YDR261C-D	YDR261C-D	LAM1	P38851	1228 aa		5.14	□□□□□ -1.59
YDR261C-D	YDR261C-D	KEL1	P38853	1164 aa	Known RBP	5.14	□□□□□ -1.59
YDR261C-D	YDR261C-D	SFB2	P53953	876 aa		5.14	□□□□□ -1.59
YDR261C-D	YDR261C-D	ADY3	Q07732	790 aa		5.14	□□□□□ -1.59
YDR261C-D	YDR261C-D	VMA4	P22203	233 aa	Known RBP	5.14	□□□□□ -1.59
YDR261C-D	YDR261C-D	NKP1	Q12493	238 aa		5.14	□□□□□ -1.59
YDR261C-D	YDR261C-D	SWC3	P31376	625 aa		5.13	□□□□□ -1.59
YDR261C-D	YDR261C-D	SPT16	P32558	1035 aa	Known RBP	5.13	□□□□□ -1.59
YDR261C-D	YDR261C-D	BOI2	P39969	1040 aa		5.13	□□□□□ -1.59
YDR261C-D	YDR261C-D	LAM5	P43560	674 aa		5.13	□□□□□ -1.59
YDR261C-D	YDR261C-D	IOC4	Q04213	475 aa		5.13	□□□□□ -1.59
YDR261C-D	YDR261C-D	SEC2	P17065	759 aa		5.13	□□□□□ -1.59
YDR261C-D	YDR261C-D	TIF3	P34167	436 aa	Known RBP	5.13	□□□□□ -1.59
YDR261C-D	YDR261C-D	SDA1	P53313	767 aa	Known RBP	5.13	□□□□□ -1.59
YDR261C-D	YDR261C-D	SPO19	Q03029	223 aa		5.13	□□□□□ -1.59
YDR261C-D	YDR261C-D	ETT1	Q08421	412 aa	Known RBP	5.13	□□□□□ -1.59
YDR261C-D	YDR261C-D	SSE1	P32589	693 aa	Known RBP	5.13	□□□□□ -1.59
YDR261C-D	YDR261C-D	SET1	P38827	1080 aa	Known RBP	5.13	□□□□□ -1.59
YDR261C-D	YDR261C-D	RSC8	P43609	557 aa	Known RBP	5.13	□□□□□ -1.59
YDR261C-D	YDR261C-D	APL5	Q08951	932 aa	Known RBP	5.13	□□□□□ -1.59
YDR261C-D	YDR261C-D	SWE1	P32944	819 aa		5.12	□□□□□ -1.59
YDR261C-D	YDR261C-D	TIF5	P38431	405 aa	Known RBP	5.12	□□□□□ -1.59
YDR261C-D	YDR261C-D	SEC31	P38968	1273 aa	Known RBP	5.12	□□□□□ -1.59
YDR261C-D	YDR261C-D	LSP1	Q12230	341 aa	Known RBP	5.12	□□□□□ -1.59
YDR261C-D	YDR261C-D	YLL054C	Q12244	843 aa		5.12	□□□□□ -1.59
YDR261C-D	YDR261C-D	NPR3	P38742	1146 aa		5.12	□□□□□ -1.59
YDR261C-D	YDR261C-D	SAP1	P39955	897 aa	Known RBP	5.12	□□□□□ -1.59
YDR261C-D	YDR261C-D	RIA1	P53893	1110 aa		5.12	□□□□□ -1.59
YDR261C-D	YDR261C-D	SFI1	Q12369	946 aa		5.12	□□□□□ -1.59
YDR261C-D	YDR261C-D	SEC26	P41810	973 aa	Known RBP	5.11	□□□□□ -1.59
YDR261C-D	YDR261C-D	FAR11	P53917	953 aa		5.11	□□□□□ -1.59
YDR261C-D	YDR261C-D	SMC6	Q12749	1114 aa		5.11	□□□□□ -1.59
YDR261C-D	YDR261C-D	PWP2	P25635	923 aa	Known RBP	5.11	□□□□□ -1.59
YDR261C-D	YDR261C-D	SPT5	P27692	1063 aa	Known RBP	5.11	□□□□□ -1.59
YDR261C-D	YDR261C-D	FAF1	P40546	346 aa	Predicted RBP	5.11	□□□□□ -1.59
YDR261C-D	YDR261C-D	IES1	P43579	692 aa		5.11	□□□□□ -1.59

Retrieved 100 of 5,963 RNA–protein pairs in 49.3 ms