Protein–RNA interactions for Protein: P40343

VPS27, Vacuolar protein sorting-associated protein 27, yeastyeast

Known RBP Predictions only

Length 622 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
VPS27P40343 YML009W-BYML009W-B 477 nt25.89■■□□□ 1.74
VPS27P40343 NSR1YGR159C 1245 nt25.85■■□□□ 1.73
VPS27P40343 NOP1YDL014W 984 nt25■■□□□ 1.59
VPS27P40343 MDJ1YFL016C 1536 nt23.25■■□□□ 1.31
VPS27P40343 YKL036CYKL036C 393 nt22.88■■□□□ 1.25
VPS27P40343 SRX1YKL086W 384 nt21.85■■□□□ 1.09
VPS27P40343 Q0297Q0297 156 nt21.8■■□□□ 1.08
VPS27P40343 YJL027CYJL027C 417 nt21.41■■□□□ 1.02
VPS27P40343 YCR051WYCR051W 669 nt20.78■□□□□ 0.92
VPS27P40343 SCS3YGL126W 1143 nt20.72■□□□□ 0.91
VPS27P40343 DBP2YNL112W 1641 nt20.44■□□□□ 0.86
VPS27P40343 TRN1tP(UGG)A 72 nt19.9■□□□□ 0.78
VPS27P40343 SUF9tP(UGG)F 72 nt19.9■□□□□ 0.78
VPS27P40343 SUF8tP(UGG)H 72 nt19.9■□□□□ 0.78
VPS27P40343 tP(UGG)LtP(UGG)L 72 nt19.9■□□□□ 0.78
VPS27P40343 SUF7tP(UGG)M 72 nt19.9■□□□□ 0.78
VPS27P40343 tP(UGG)N1tP(UGG)N1 72 nt19.9■□□□□ 0.78
VPS27P40343 tP(UGG)N2tP(UGG)N2 72 nt19.9■□□□□ 0.78
VPS27P40343 tP(UGG)O1tP(UGG)O1 72 nt19.9■□□□□ 0.78
VPS27P40343 SUF11tP(UGG)O2 72 nt19.9■□□□□ 0.78
VPS27P40343 YOL085CYOL085C 342 nt19.84■□□□□ 0.77
VPS27P40343 YBR190WYBR190W 312 nt19.81■□□□□ 0.76
VPS27P40343 CCC1YLR220W 969 nt19.79■□□□□ 0.76
VPS27P40343 PKP1YIL042C 1185 nt19.65■□□□□ 0.74
VPS27P40343 RPP1BYDL130W 321 nt19.58■□□□□ 0.72
VPS27P40343 RTC3YHR087W 336 nt19.44■□□□□ 0.7
VPS27P40343 RVS167YDR388W 1449 nt19.15■□□□□ 0.66
VPS27P40343 SCJ1YMR214W 1134 nt19.04■□□□□ 0.64
VPS27P40343 PET122YER153C 765 nt18.78■□□□□ 0.6
VPS27P40343 tP(UGG)O3tP(UGG)O3 72 nt18.77■□□□□ 0.6
VPS27P40343 SCR1SCR1 522 nt18.48■□□□□ 0.55
VPS27P40343 ATS1YAL020C 1002 nt18.46■□□□□ 0.55
VPS27P40343 SHR5YOL110W 714 nt18.42■□□□□ 0.54
VPS27P40343 RRN5YLR141W 1092 nt18.22■□□□□ 0.51
VPS27P40343 PUT4YOR348C 1884 nt18.18■□□□□ 0.5
VPS27P40343 YDJ1YNL064C 1230 nt18.11■□□□□ 0.49
VPS27P40343 URN1YPR152C 1398 nt18.09■□□□□ 0.49
VPS27P40343 DEP1YAL013W 1218 nt18.08■□□□□ 0.48
VPS27P40343 SAH1YER043C 1350 nt17.84■□□□□ 0.45
VPS27P40343 YER088W-BYER088W-B 147 nt17.84■□□□□ 0.45
VPS27P40343 OPI9YLR338W 858 nt17.84■□□□□ 0.45
VPS27P40343 GAR1YHR089C 618 nt17.83■□□□□ 0.44
VPS27P40343 ARE1YCR048W 1833 nt17.8■□□□□ 0.44
VPS27P40343 RSB1YOR049C 1065 nt17.79■□□□□ 0.44
VPS27P40343 RPN10YHR200W 807 nt17.71■□□□□ 0.43
VPS27P40343 YNL208WYNL208W 600 nt17.68■□□□□ 0.42
VPS27P40343 POA1YBR022W 534 nt17.65■□□□□ 0.42
VPS27P40343 YHR049C-AYHR049C-A 297 nt17.59■□□□□ 0.41
VPS27P40343 SSA3YBL075C 1950 nt17.46■□□□□ 0.39
VPS27P40343 PUN1YLR414C 792 nt17.31■□□□□ 0.36
VPS27P40343 BSC6YOL137W 1494 nt17.28■□□□□ 0.36
VPS27P40343 YJR018WYJR018W 363 nt17.24■□□□□ 0.35
VPS27P40343 BUD23YCR047C 828 nt17.21■□□□□ 0.35
VPS27P40343 TIR1YER011W 765 nt17.21■□□□□ 0.35
VPS27P40343 PTC2YER089C 1395 nt17.19■□□□□ 0.34
VPS27P40343 PST2YDR032C 597 nt17.13■□□□□ 0.33
VPS27P40343 SSA1YAL005C 1929 nt17.07■□□□□ 0.32
VPS27P40343 NAB2YGL122C 1578 nt16.95■□□□□ 0.3
VPS27P40343 YJR120WYJR120W 351 nt16.92■□□□□ 0.3
VPS27P40343 RPP2BYDR382W 333 nt16.81■□□□□ 0.28
VPS27P40343 SRB2YHR041C 633 nt16.77■□□□□ 0.28
VPS27P40343 FPR4YLR449W 1179 nt16.73■□□□□ 0.27
VPS27P40343 DAL1YIR027C 1383 nt16.69■□□□□ 0.26
VPS27P40343 FIS1YIL065C 468 nt16.69■□□□□ 0.26
VPS27P40343 INM2YDR287W 879 nt16.61■□□□□ 0.25
VPS27P40343 SPT5YML010W 3192 nt16.55■□□□□ 0.24
VPS27P40343 PHO4YFR034C 939 nt16.55■□□□□ 0.24
VPS27P40343 SHU1YHL006C 453 nt16.52■□□□□ 0.24
VPS27P40343 WWM1YFL010C 636 nt16.45■□□□□ 0.22
VPS27P40343 YBL100CYBL100C 315 nt16.45■□□□□ 0.22
VPS27P40343 BDH2YAL061W 1254 nt16.43■□□□□ 0.22
VPS27P40343 YAL037C-BYAL037C-B 975 nt16.4■□□□□ 0.22
VPS27P40343 YKL097CYKL097C 411 nt16.34■□□□□ 0.21
VPS27P40343 YPS1YLR120C 1710 nt16.29■□□□□ 0.2
VPS27P40343 FUN26YAL022C 1554 nt16.25■□□□□ 0.19
VPS27P40343 MEP2YNL142W 1500 nt16.21■□□□□ 0.19
VPS27P40343 YGR021WYGR021W 873 nt16.2■□□□□ 0.18
VPS27P40343 TRM9YML014W 840 nt16.18■□□□□ 0.18
VPS27P40343 YHR165W-AYHR165W-A 312 nt16.17■□□□□ 0.18
VPS27P40343 HOM6YJR139C 1080 nt16.17■□□□□ 0.18
VPS27P40343 YDR095CYDR095C 411 nt16.14■□□□□ 0.17
VPS27P40343 LSM3YLR438C-A 270 nt16.14■□□□□ 0.17
VPS27P40343 YFL021C-AYFL021C-A 855 nt16.12■□□□□ 0.17
VPS27P40343 MNP1YGL068W 585 nt16.12■□□□□ 0.17
VPS27P40343 SSA4YER103W 1929 nt16.09■□□□□ 0.17
VPS27P40343 ALF1YNL148C 765 nt16.08■□□□□ 0.16
VPS27P40343 DCW1YKL046C 1350 nt16.01■□□□□ 0.15
VPS27P40343 CCT6YDR188W 1641 nt15.98■□□□□ 0.15
VPS27P40343 RKM5YLR137W 1104 nt15.93■□□□□ 0.14
VPS27P40343 SUF2tP(AGG)C 72 nt15.87■□□□□ 0.13
VPS27P40343 SUF10tP(AGG)N 72 nt15.87■□□□□ 0.13
VPS27P40343 RPP2AYOL039W 321 nt15.85■□□□□ 0.13
VPS27P40343 PTP1YDL230W 1008 nt15.82■□□□□ 0.12
VPS27P40343 SIS1YNL007C 1059 nt15.8■□□□□ 0.12
VPS27P40343 EMI2YDR516C 1503 nt15.78■□□□□ 0.12
VPS27P40343 CAC2YML102W 1407 nt15.77■□□□□ 0.11
VPS27P40343 YOR139CYOR139C 393 nt15.74■□□□□ 0.11
VPS27P40343 NPL3YDR432W 1245 nt15.67■□□□□ 0.1
VPS27P40343 YOL037CYOL037C 354 nt15.66■□□□□ 0.1
VPS27P40343 YMR090WYMR090W 684 nt15.65■□□□□ 0.1
Retrieved 100 of 7,029 protein–RNA pairs in 15.9 ms