RNA–Protein interactions for RNA: YDR261C-D

YDR261C-D, Transcript of Retrotransposon TYA Gag and TYB Pol genes, yeast

Gene YDR261C-D, Length 4,815 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
YDR261C-D	YDR261C-D	RQC2	Q12532	1038 aa	Known RBP	7.45	□□□□□ -1.22
YDR261C-D	YDR261C-D	MNN4	P36044	1178 aa		6.64	□□□□□ -1.35
YDR261C-D	YDR261C-D	TAF7	Q05021	590 aa		6.49	□□□□□ -1.37
YDR261C-D	YDR261C-D	TFA1	P36100	482 aa		6.44	□□□□□ -1.38
YDR261C-D	YDR261C-D	BFR2	Q06631	534 aa	Known RBP	6.43	□□□□□ -1.38
YDR261C-D	YDR261C-D	AIM44	Q99299	758 aa		6.42	□□□□□ -1.38
YDR261C-D	YDR261C-D	CAB3	P36076	571 aa		6.34	□□□□□ -1.4
YDR261C-D	YDR261C-D	FPR3	P38911	411 aa	Known RBP	6.27	□□□□□ -1.41
YDR261C-D	YDR261C-D	FUN12	P39730	1002 aa	Known RBP	6.2	□□□□□ -1.42
YDR261C-D	YDR261C-D	YRB30	P53107	440 aa	Predicted RBP	6.17	□□□□□ -1.42
YDR261C-D	YDR261C-D	QCR6	P00127	147 aa		6.16	□□□□□ -1.42
YDR261C-D	YDR261C-D	ASF1	P32447	279 aa		6.13	□□□□□ -1.43
YDR261C-D	YDR261C-D	RNA1	P11745	407 aa	Known RBP	6.12	□□□□□ -1.43
YDR261C-D	YDR261C-D	DRS1	P32892	752 aa	Known RBP	6.08	□□□□□ -1.44
YDR261C-D	YDR261C-D	NOP2	P40991	618 aa	Known RBP	6.04	□□□□□ -1.44
YDR261C-D	YDR261C-D	LEO1	P38439	464 aa		6.01	□□□□□ -1.45
YDR261C-D	YDR261C-D	RIX1	P38883	763 aa	Predicted RBP	5.99	□□□□□ -1.45
YDR261C-D	YDR261C-D	TOP1	P04786	769 aa		5.92	□□□□□ -1.46
YDR261C-D	YDR261C-D	DEF1	P35732	738 aa	Known RBP	5.91	□□□□□ -1.46
YDR261C-D	YDR261C-D	RPS0B	P46654	252 aa	Known RBP	5.91	□□□□□ -1.46
YDR261C-D	YDR261C-D	EBP2	P36049	427 aa	Known RBP	5.9	□□□□□ -1.46
YDR261C-D	YDR261C-D	NAP1	P25293	417 aa	Known RBP	5.85	□□□□□ -1.47
YDR261C-D	YDR261C-D	EAF7	P53911	425 aa	Known RBP	5.85	□□□□□ -1.47
YDR261C-D	YDR261C-D	CBF5	P33322	483 aa	Known RBP RIP-Chip data	5.85	□□□□□ -1.47	not detected
YDR261C-D	YDR261C-D	HSP82	P02829	709 aa	Known RBP	5.85	□□□□□ -1.47
YDR261C-D	YDR261C-D	NAB3	P38996	802 aa	Known RBP RIP-Chip data	5.84	□□□□□ -1.47	not detected
YDR261C-D	YDR261C-D	RPS0A	P32905	252 aa	Known RBP	5.78	□□□□□ -1.48
YDR261C-D	YDR261C-D	PSH1	Q12161	406 aa		5.78	□□□□□ -1.48
YDR261C-D	YDR261C-D	HSC82	P15108	705 aa	Known RBP	5.76	□□□□□ -1.49
YDR261C-D	YDR261C-D	SAS10	Q12136	610 aa	Predicted RBP	5.75	□□□□□ -1.49
YDR261C-D	YDR261C-D	SPT2	P06843	333 aa	Predicted RBP	5.74	□□□□□ -1.49
YDR261C-D	YDR261C-D	RLP24	Q07915	199 aa	Known RBP	5.71	□□□□□ -1.5
YDR261C-D	YDR261C-D	FPR4	Q06205	392 aa	Predicted RBP	5.69	□□□□□ -1.5
YDR261C-D	YDR261C-D	SIS2	P36024	562 aa		5.69	□□□□□ -1.5
YDR261C-D	YDR261C-D	LEU3	P08638	886 aa		5.67	□□□□□ -1.5
YDR261C-D	YDR261C-D	NOP56	Q12460	504 aa	Known RBP RIP-Chip data	5.67	□□□□□ -1.5	not detected
YDR261C-D	YDR261C-D	MTC1	P47018	478 aa	Known RBP	5.66	□□□□□ -1.5
YDR261C-D	YDR261C-D	DOS2	P54858	310 aa		5.65	□□□□□ -1.5
YDR261C-D	YDR261C-D	SCT1	P32784	759 aa		5.63	□□□□□ -1.51
YDR261C-D	YDR261C-D	YMR124W	P39523	943 aa	Known RBP	5.63	□□□□□ -1.51
YDR261C-D	YDR261C-D	RPN1	P38764	993 aa	Known RBP	5.62	□□□□□ -1.51
YDR261C-D	YDR261C-D	YTA6	P40328	754 aa		5.61	□□□□□ -1.51
YDR261C-D	YDR261C-D	NOP58	Q12499	511 aa	Known RBP	5.61	□□□□□ -1.51
YDR261C-D	YDR261C-D	COG8	Q04632	607 aa		5.6	□□□□□ -1.51
YDR261C-D	YDR261C-D	NOP7	P53261	605 aa	Known RBP	5.58	□□□□□ -1.52
YDR261C-D	YDR261C-D	RLF2	Q12495	606 aa		5.58	□□□□□ -1.52
YDR261C-D	YDR261C-D	ESC2	Q06340	456 aa		5.56	□□□□□ -1.52
YDR261C-D	YDR261C-D	MFT1	P33441	392 aa	Known RBP	5.56	□□□□□ -1.52
YDR261C-D	YDR261C-D	SWD1	P39706	426 aa		5.56	□□□□□ -1.52
YDR261C-D	YDR261C-D	NST1	P53935	1240 aa		5.55	□□□□□ -1.52
YDR261C-D	YDR261C-D	YFR016C	P43597	1233 aa	Known RBP	5.55	□□□□□ -1.52
YDR261C-D	YDR261C-D	KRI1	P42846	591 aa	Known RBP	5.55	□□□□□ -1.52
YDR261C-D	YDR261C-D	SUB1	P54000	292 aa	Known RBP	5.55	□□□□□ -1.52
YDR261C-D	YDR261C-D	DIP2	Q12220	943 aa	Predicted RBP	5.54	□□□□□ -1.52
YDR261C-D	YDR261C-D	MSH4	P40965	878 aa	Predicted RBP	5.54	□□□□□ -1.52
YDR261C-D	YDR261C-D	CDC11	P32458	415 aa		5.53	□□□□□ -1.52
YDR261C-D	YDR261C-D	PLP2	Q12017	286 aa		5.53	□□□□□ -1.52
YDR261C-D	YDR261C-D	NNF2	P53253	936 aa		5.52	□□□□□ -1.53
YDR261C-D	YDR261C-D	OSW7	P43611	510 aa		5.52	□□□□□ -1.53
YDR261C-D	YDR261C-D	HOS4	P40480	1083 aa		5.51	□□□□□ -1.53
YDR261C-D	YDR261C-D	TOA1	P32773	286 aa		5.51	□□□□□ -1.53
YDR261C-D	YDR261C-D	URN1	Q06525	465 aa	Known RBP	5.5	□□□□□ -1.53
YDR261C-D	YDR261C-D	ENP1	P38333	483 aa	Known RBP	5.49	□□□□□ -1.53
YDR261C-D	YDR261C-D	BTN2	P53286	410 aa		5.49	□□□□□ -1.53
YDR261C-D	YDR261C-D	YGL081W	P53156	320 aa		5.48	□□□□□ -1.53
YDR261C-D	YDR261C-D	NMD2	P38798	1089 aa	Known RBP	5.48	□□□□□ -1.53
YDR261C-D	YDR261C-D	DPB3	P27344	201 aa		5.48	□□□□□ -1.53
YDR261C-D	YDR261C-D	VPS72	Q03388	795 aa		5.47	□□□□□ -1.53
YDR261C-D	YDR261C-D	NOC3	Q07896	663 aa	Predicted RBP	5.47	□□□□□ -1.53
YDR261C-D	YDR261C-D	TCB2	P48231	1178 aa		5.46	□□□□□ -1.53
YDR261C-D	YDR261C-D	SKI2	P35207	1287 aa	Known RBP RIP-Chip data	5.46	□□□□□ -1.54	not detected
YDR261C-D	YDR261C-D	LTV1	P34078	463 aa		5.46	□□□□□ -1.54
YDR261C-D	YDR261C-D	GLE1	Q12315	538 aa		5.45	□□□□□ -1.54
YDR261C-D	YDR261C-D	YSH1	Q06224	779 aa	Predicted RBP	5.45	□□□□□ -1.54
YDR261C-D	YDR261C-D	MDM38	Q08179	573 aa		5.45	□□□□□ -1.54
YDR261C-D	YDR261C-D	HGH1	P48362	394 aa	Known RBP	5.44	□□□□□ -1.54
YDR261C-D	YDR261C-D	AVT3	P36062	692 aa		5.44	□□□□□ -1.54
YDR261C-D	YDR261C-D	EFB1	P32471	206 aa	Known RBP	5.44	□□□□□ -1.54
YDR261C-D	YDR261C-D	POL5	P39985	1022 aa	Known RBP	5.43	□□□□□ -1.54
YDR261C-D	YDR261C-D	TSR1	Q07381	788 aa	Known RBP	5.43	□□□□□ -1.54
YDR261C-D	YDR261C-D	SPB4	P25808	606 aa	Predicted RBP	5.43	□□□□□ -1.54
YDR261C-D	YDR261C-D	RPG1	P38249	964 aa	Known RBP	5.43	□□□□□ -1.54
YDR261C-D	YDR261C-D	DSL1	P53847	754 aa		5.42	□□□□□ -1.54
YDR261C-D	YDR261C-D	JIP3	O13555	125 aa		5.41	□□□□□ -1.54
YDR261C-D	YDR261C-D	SEG2	P34250	1132 aa		5.41	□□□□□ -1.54
YDR261C-D	YDR261C-D	SNU71	P53207	620 aa	Known RBP	5.41	□□□□□ -1.54
YDR261C-D	YDR261C-D	SPT7	P35177	1332 aa		5.41	□□□□□ -1.54
YDR261C-D	YDR261C-D	ESF2	P53743	316 aa	Known RBP	5.4	□□□□□ -1.55
YDR261C-D	YDR261C-D	SAS3	P34218	831 aa		5.4	□□□□□ -1.55
YDR261C-D	YDR261C-D	JJJ1	P53863	590 aa		5.4	□□□□□ -1.55
YDR261C-D	YDR261C-D	SET2	P46995	733 aa	Known RBP	5.39	□□□□□ -1.55
YDR261C-D	YDR261C-D	YPR148C	Q06523	435 aa		5.39	□□□□□ -1.55
YDR261C-D	YDR261C-D	CLC1	P17891	233 aa		5.39	□□□□□ -1.55
YDR261C-D	YDR261C-D	RPC37	P36121	282 aa		5.39	□□□□□ -1.55
YDR261C-D	YDR261C-D	DEP1	P31385	405 aa		5.39	□□□□□ -1.55
YDR261C-D	YDR261C-D	ORC1	P54784	914 aa	Predicted RBP	5.39	□□□□□ -1.55
YDR261C-D	YDR261C-D	IFH1	P39520	1085 aa		5.38	□□□□□ -1.55
YDR261C-D	YDR261C-D	HUL5	P53119	910 aa		5.38	□□□□□ -1.55
YDR261C-D	YDR261C-D	YLH47	Q06493	454 aa		5.38	□□□□□ -1.55
YDR261C-D	YDR261C-D	TAN1	P53072	289 aa	Predicted RBP	5.37	□□□□□ -1.55

Retrieved 100 of 5,963 RNA–protein pairs in 334.5 ms