Protein–RNA interactions for Protein: P36534

MRPL40, 54S ribosomal protein L40, mitochondrial, yeastyeast

Predictions only

Length 297 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
MRPL40P36534 YML009W-BYML009W-B 477 nt20.91■□□□□ 0.94
MRPL40P36534 NSR1YGR159C 1245 nt20.67■□□□□ 0.9
MRPL40P36534 NOP1YDL014W 984 nt20.42■□□□□ 0.86
MRPL40P36534 YKL036CYKL036C 393 nt18.94■□□□□ 0.62
MRPL40P36534 MDJ1YFL016C 1536 nt18.18■□□□□ 0.5
MRPL40P36534 Q0297Q0297 156 nt17.89■□□□□ 0.45
MRPL40P36534 SRX1YKL086W 384 nt17.82■□□□□ 0.44
MRPL40P36534 YJL027CYJL027C 417 nt17.7■□□□□ 0.42
MRPL40P36534 SCS3YGL126W 1143 nt17.28■□□□□ 0.36
MRPL40P36534 YCR051WYCR051W 669 nt16.9■□□□□ 0.3
MRPL40P36534 YOL085CYOL085C 342 nt16.37■□□□□ 0.21
MRPL40P36534 DBP2YNL112W 1641 nt16.12■□□□□ 0.17
MRPL40P36534 PKP1YIL042C 1185 nt16.08■□□□□ 0.16
MRPL40P36534 RPP1BYDL130W 321 nt16.05■□□□□ 0.16
MRPL40P36534 TRN1tP(UGG)A 72 nt16.02■□□□□ 0.16
MRPL40P36534 SUF9tP(UGG)F 72 nt16.02■□□□□ 0.16
MRPL40P36534 SUF8tP(UGG)H 72 nt16.02■□□□□ 0.16
MRPL40P36534 tP(UGG)LtP(UGG)L 72 nt16.02■□□□□ 0.16
MRPL40P36534 SUF7tP(UGG)M 72 nt16.02■□□□□ 0.16
MRPL40P36534 tP(UGG)N1tP(UGG)N1 72 nt16.02■□□□□ 0.16
MRPL40P36534 tP(UGG)N2tP(UGG)N2 72 nt16.02■□□□□ 0.16
MRPL40P36534 tP(UGG)O1tP(UGG)O1 72 nt16.02■□□□□ 0.16
MRPL40P36534 SUF11tP(UGG)O2 72 nt16.02■□□□□ 0.16
MRPL40P36534 CCC1YLR220W 969 nt15.83■□□□□ 0.12
MRPL40P36534 SCJ1YMR214W 1134 nt15.63■□□□□ 0.09
MRPL40P36534 YBR190WYBR190W 312 nt15.51■□□□□ 0.07
MRPL40P36534 ATS1YAL020C 1002 nt15.48■□□□□ 0.07
MRPL40P36534 PET122YER153C 765 nt15.29■□□□□ 0.04
MRPL40P36534 RVS167YDR388W 1449 nt15.28■□□□□ 0.04
MRPL40P36534 SCR1SCR1 522 nt15.23■□□□□ 0.03
MRPL40P36534 tP(UGG)O3tP(UGG)O3 72 nt15.19■□□□□ 0.02
MRPL40P36534 RTC3YHR087W 336 nt15.17■□□□□ 0.02
MRPL40P36534 RRN5YLR141W 1092 nt14.86□□□□□ -0.03
MRPL40P36534 SHR5YOL110W 714 nt14.76□□□□□ -0.05
MRPL40P36534 YDJ1YNL064C 1230 nt14.73□□□□□ -0.05
MRPL40P36534 RSB1YOR049C 1065 nt14.62□□□□□ -0.07
MRPL40P36534 YER088W-BYER088W-B 147 nt14.57□□□□□ -0.08
MRPL40P36534 SSA3YBL075C 1950 nt14.56□□□□□ -0.08
MRPL40P36534 GAR1YHR089C 618 nt14.34□□□□□ -0.11
MRPL40P36534 PST2YDR032C 597 nt14.31□□□□□ -0.12
MRPL40P36534 URN1YPR152C 1398 nt14.24□□□□□ -0.13
MRPL40P36534 DEP1YAL013W 1218 nt14.24□□□□□ -0.13
MRPL40P36534 RPN10YHR200W 807 nt14.13□□□□□ -0.15
MRPL40P36534 YNL208WYNL208W 600 nt14.09□□□□□ -0.15
MRPL40P36534 OPI9YLR338W 858 nt14.02□□□□□ -0.17
MRPL40P36534 PUT4YOR348C 1884 nt13.93□□□□□ -0.18
MRPL40P36534 YKL097CYKL097C 411 nt13.92□□□□□ -0.18
MRPL40P36534 TIR1YER011W 765 nt13.87□□□□□ -0.19
MRPL40P36534 SAH1YER043C 1350 nt13.86□□□□□ -0.19
MRPL40P36534 ARE1YCR048W 1833 nt13.71□□□□□ -0.21
MRPL40P36534 SHU1YHL006C 453 nt13.69□□□□□ -0.22
MRPL40P36534 PUN1YLR414C 792 nt13.65□□□□□ -0.22
MRPL40P36534 SSA1YAL005C 1929 nt13.63□□□□□ -0.23
MRPL40P36534 YJR018WYJR018W 363 nt13.61□□□□□ -0.23
MRPL40P36534 YHR049C-AYHR049C-A 297 nt13.57□□□□□ -0.24
MRPL40P36534 POA1YBR022W 534 nt13.51□□□□□ -0.25
MRPL40P36534 RPP2BYDR382W 333 nt13.41□□□□□ -0.26
MRPL40P36534 YAL037C-BYAL037C-B 975 nt13.41□□□□□ -0.26
MRPL40P36534 PTC2YER089C 1395 nt13.4□□□□□ -0.26
MRPL40P36534 SRB2YHR041C 633 nt13.38□□□□□ -0.27
MRPL40P36534 YJR120WYJR120W 351 nt13.38□□□□□ -0.27
MRPL40P36534 YGR021WYGR021W 873 nt13.29□□□□□ -0.28
MRPL40P36534 BUD23YCR047C 828 nt13.27□□□□□ -0.29
MRPL40P36534 WWM1YFL010C 636 nt13.25□□□□□ -0.29
MRPL40P36534 NAB2YGL122C 1578 nt13.23□□□□□ -0.29
MRPL40P36534 YOR139CYOR139C 393 nt13.22□□□□□ -0.29
MRPL40P36534 HOM6YJR139C 1080 nt13.2□□□□□ -0.3
MRPL40P36534 BSC6YOL137W 1494 nt13.2□□□□□ -0.3
MRPL40P36534 NPL3YDR432W 1245 nt13.15□□□□□ -0.3
MRPL40P36534 INM2YDR287W 879 nt13.13□□□□□ -0.31
MRPL40P36534 MNP1YGL068W 585 nt13.13□□□□□ -0.31
MRPL40P36534 BDH2YAL061W 1254 nt13.13□□□□□ -0.31
MRPL40P36534 DAL1YIR027C 1383 nt13.09□□□□□ -0.31
MRPL40P36534 YFL021C-AYFL021C-A 855 nt13.09□□□□□ -0.31
MRPL40P36534 FIS1YIL065C 468 nt13.04□□□□□ -0.32
MRPL40P36534 YOL037CYOL037C 354 nt13.04□□□□□ -0.32
MRPL40P36534 FPR4YLR449W 1179 nt13.03□□□□□ -0.32
MRPL40P36534 RKM5YLR137W 1104 nt13.01□□□□□ -0.33
MRPL40P36534 YBL100CYBL100C 315 nt13.01□□□□□ -0.33
MRPL40P36534 LSM3YLR438C-A 270 nt13□□□□□ -0.33
MRPL40P36534 PHO4YFR034C 939 nt12.95□□□□□ -0.34
MRPL40P36534 TRM9YML014W 840 nt12.87□□□□□ -0.35
MRPL40P36534 FUN26YAL022C 1554 nt12.85□□□□□ -0.35
MRPL40P36534 CCT6YDR188W 1641 nt12.72□□□□□ -0.37
MRPL40P36534 tM(CAU)CtM(CAU)C 72 nt12.71□□□□□ -0.37
MRPL40P36534 IMT4tM(CAU)E 72 nt12.71□□□□□ -0.37
MRPL40P36534 IMT3tM(CAU)J3 72 nt12.71□□□□□ -0.37
MRPL40P36534 IMT1tM(CAU)O1 72 nt12.71□□□□□ -0.37
MRPL40P36534 IMT2tM(CAU)P 72 nt12.71□□□□□ -0.37
MRPL40P36534 YLR281CYLR281C 468 nt12.67□□□□□ -0.38
MRPL40P36534 ALF1YNL148C 765 nt12.67□□□□□ -0.38
MRPL40P36534 SUF2tP(AGG)C 72 nt12.65□□□□□ -0.38
MRPL40P36534 SUF10tP(AGG)N 72 nt12.65□□□□□ -0.38
MRPL40P36534 YPS1YLR120C 1710 nt12.64□□□□□ -0.39
MRPL40P36534 YDR095CYDR095C 411 nt12.61□□□□□ -0.39
MRPL40P36534 WHI5YOR083W 888 nt12.61□□□□□ -0.39
MRPL40P36534 PUS2YGL063W 1113 nt12.59□□□□□ -0.39
MRPL40P36534 PAC11YDR488C 1602 nt12.53□□□□□ -0.4
MRPL40P36534 YHR165W-AYHR165W-A 312 nt12.51□□□□□ -0.41
MRPL40P36534 YLR154C-GYLR154C-G 150 nt12.51□□□□□ -0.41
Retrieved 100 of 7,029 protein–RNA pairs in 13.5 ms