RNA–Protein interactions for RNA: YKL054C

DEF1, Transcript of RNAPII degradation factor, yeastyeast

Gene DEF1, Length 2,217 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
DEF1YKL054C YPL034WQ03083 165 aa5.97□□□□□ -1.45
DEF1YKL054C USA1Q03714 838 aa5.97□□□□□ -1.45
DEF1YKL054C STE23Q06010 1027 aa5.97□□□□□ -1.45
DEF1YKL054C ATG23Q06671 453 aa5.97□□□□□ -1.45
DEF1YKL054C PDA1P16387 420 aaKnown RBP5.96□□□□□ -1.46
DEF1YKL054C SPO7P18410 259 aa5.96□□□□□ -1.46
DEF1YKL054C KRE6P32486 720 aa5.96□□□□□ -1.46
DEF1YKL054C MSS1P32559 526 aaPredicted RBP5.96□□□□□ -1.46
DEF1YKL054C MSN4P33749 630 aa5.96□□□□□ -1.46
DEF1YKL054C SKI2P35207 1287 aaKnown RBP RIP-Chip data5.96□□□□□ -1.46not detected
DEF1YKL054C TUL1P36096 758 aa5.96□□□□□ -1.46
DEF1YKL054C YJL193WP39542 402 aa5.96□□□□□ -1.46
DEF1YKL054C YGR149WP48236 432 aa5.96□□□□□ -1.46
DEF1YKL054C HOP2P53187 214 aa5.96□□□□□ -1.46
DEF1YKL054C TEX1P53851 422 aaKnown RBP5.96□□□□□ -1.46
DEF1YKL054C YFH1Q07540 174 aa5.96□□□□□ -1.46
DEF1YKL054C RBD2Q12270 262 aa5.96□□□□□ -1.46
DEF1YKL054C YDR061WQ12298 539 aa5.96□□□□□ -1.46
DEF1YKL054C ARG80P07249 177 aa5.95□□□□□ -1.46
DEF1YKL054C VPS34P22543 875 aa5.95□□□□□ -1.46
DEF1YKL054C GEX1P25596 615 aa5.95□□□□□ -1.46
DEF1YKL054C EFB1P32471 206 aaKnown RBP5.95□□□□□ -1.46
DEF1YKL054C YJL070CP40361 888 aa5.95□□□□□ -1.46
DEF1YKL054C IDS2P46958 469 aa5.95□□□□□ -1.46
DEF1YKL054C YGL138CP53122 345 aa5.95□□□□□ -1.46
DEF1YKL054C PNC1P53184 216 aaKnown RBP5.95□□□□□ -1.46
DEF1YKL054C YDR179W-AQ03983 463 aa5.95□□□□□ -1.46
DEF1YKL054C BUD22Q04347 519 aaKnown RBP5.95□□□□□ -1.46
DEF1YKL054C SMA2Q04658 369 aa5.95□□□□□ -1.46
DEF1YKL054C YFT2Q06676 274 aa5.95□□□□□ -1.46
DEF1YKL054C FRE3Q08905 711 aa5.95□□□□□ -1.46
DEF1YKL054C LDB17Q12342 491 aa5.95□□□□□ -1.46
DEF1YKL054C PRB1P09232 635 aa5.95□□□□□ -1.46
DEF1YKL054C RDS1P25611 832 aa5.95□□□□□ -1.46
DEF1YKL054C NDI1P32340 513 aa5.95□□□□□ -1.46
DEF1YKL054C DSS4P32601 143 aa5.95□□□□□ -1.46
DEF1YKL054C BZZ1P38822 633 aa5.95□□□□□ -1.46
DEF1YKL054C PEX7P39108 375 aa5.95□□□□□ -1.46
DEF1YKL054C SCC4P40090 624 aa5.95□□□□□ -1.46
DEF1YKL054C STB2P46679 850 aa5.95□□□□□ -1.46
DEF1YKL054C RFX1P48743 811 aa5.95□□□□□ -1.46
DEF1YKL054C MRPS35P53292 345 aa5.95□□□□□ -1.46
DEF1YKL054C MDM36Q06820 579 aa5.95□□□□□ -1.46
DEF1YKL054C FMP40Q08968 688 aaPredicted RBP5.95□□□□□ -1.46
DEF1YKL054C SEC12P11655 471 aa5.94□□□□□ -1.46
DEF1YKL054C MRP13P12686 339 aa5.94□□□□□ -1.46
DEF1YKL054C PEX1P24004 1043 aa5.94□□□□□ -1.46
DEF1YKL054C MSG5P38590 489 aa5.94□□□□□ -1.46
DEF1YKL054C ASG1P40467 964 aa5.94□□□□□ -1.46
DEF1YKL054C MND2P40577 368 aa5.94□□□□□ -1.46
DEF1YKL054C YFR018CP43599 363 aa5.94□□□□□ -1.46
DEF1YKL054C NET1P47035 1189 aa5.94□□□□□ -1.46
DEF1YKL054C LIA1P47120 325 aaKnown RBP5.94□□□□□ -1.46
DEF1YKL054C YLR297WQ05899 129 aa5.94□□□□□ -1.46
DEF1YKL054C ARR1Q06596 294 aa5.94□□□□□ -1.46
DEF1YKL054C YBR255C-AQ3E776 120 aa5.94□□□□□ -1.46
DEF1YKL054C RFA2P26754 273 aaKnown RBP5.94□□□□□ -1.46
DEF1YKL054C YKL070WP36087 169 aa5.94□□□□□ -1.46
DEF1YKL054C GLG1P36143 616 aa5.94□□□□□ -1.46
DEF1YKL054C PXL1P36166 706 aa5.94□□□□□ -1.46
DEF1YKL054C AGP2P38090 596 aa5.94□□□□□ -1.46
DEF1YKL054C RMD9P53140 646 aaKnown RBP5.94□□□□□ -1.46
DEF1YKL054C SKO1Q02100 647 aa5.94□□□□□ -1.46
DEF1YKL054C RTT109Q07794 436 aa5.94□□□□□ -1.46
DEF1YKL054C NTO1Q12311 748 aa5.94□□□□□ -1.46
DEF1YKL054C RAD61Q99359 647 aa5.94□□□□□ -1.46
DEF1YKL054C YLR278CQ05854 1341 aa5.93□□□□□ -1.46
DEF1YKL054C SCH9P11792 824 aaKnown RBP5.93□□□□□ -1.46
DEF1YKL054C PPH22P23595 377 aa5.93□□□□□ -1.46
DEF1YKL054C COS5P47187 383 aa5.93□□□□□ -1.46
DEF1YKL054C BIO3P50277 480 aa5.93□□□□□ -1.46
DEF1YKL054C YGR054WP53235 642 aaKnown RBP5.93□□□□□ -1.46
DEF1YKL054C COS7Q07788 383 aa5.93□□□□□ -1.46
DEF1YKL054C FRE5Q08908 694 aa5.93□□□□□ -1.46
DEF1YKL054C TAF3Q12297 353 aa5.93□□□□□ -1.46
DEF1YKL054C DFG16Q99234 619 aa5.93□□□□□ -1.46
DEF1YKL054C PRP2P20095 876 aaPredicted RBP5.93□□□□□ -1.46
DEF1YKL054C SRP54P20424 541 aaKnown RBP5.93□□□□□ -1.46
DEF1YKL054C VPS3P23643 1011 aa5.93□□□□□ -1.46
DEF1YKL054C ELO2P25358 347 aa5.93□□□□□ -1.46
DEF1YKL054C COT1P32798 439 aa5.93□□□□□ -1.46
DEF1YKL054C UGP1P32861 499 aaKnown RBP5.93□□□□□ -1.46
DEF1YKL054C FAD1P38913 306 aa5.93□□□□□ -1.46
DEF1YKL054C AFG3P39925 761 aa5.93□□□□□ -1.46
DEF1YKL054C ULP2P40537 1034 aaPredicted RBP5.93□□□□□ -1.46
DEF1YKL054C LSB3P43603 459 aaKnown RBP5.93□□□□□ -1.46
DEF1YKL054C RPA34P47006 233 aaPredicted RBP5.93□□□□□ -1.46
DEF1YKL054C IRC8P47046 822 aa5.93□□□□□ -1.46
DEF1YKL054C COP1P53622 1201 aaKnown RBP5.93□□□□□ -1.46
DEF1YKL054C REX2P54964 269 aaKnown RBP5.93□□□□□ -1.46
DEF1YKL054C NDL1Q06568 189 aa5.93□□□□□ -1.46
DEF1YKL054C YDL007C-AQ2V2Q0 85 aa5.93□□□□□ -1.46
DEF1YKL054C SAG1P20840 650 aa5.92□□□□□ -1.46
DEF1YKL054C MRPL37P36532 105 aa5.92□□□□□ -1.46
DEF1YKL054C ARO9P38840 513 aaPredicted RBP5.92□□□□□ -1.46
DEF1YKL054C TMN3P40071 706 aa5.92□□□□□ -1.46
DEF1YKL054C MCM6P53091 1017 aaKnown RBP5.92□□□□□ -1.46
DEF1YKL054C SPC98P53540 846 aa5.92□□□□□ -1.46
DEF1YKL054C EFM6P53970 246 aa5.92□□□□□ -1.46
DEF1YKL054C AEP3Q12089 606 aa5.92□□□□□ -1.46
Retrieved 100 of 5,963 RNA–protein pairs in 40.3 ms