RNA–Protein interactions for RNA: YPL045W

VPS16, Transcript of Subunit of the HOPS and the CORVET complexes, yeastyeast

Gene VPS16, Length 2,397 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
VPS16YPL045W ROY1Q04847 553 aa2.42□□□□□ -2.02
VPS16YPL045W VPS38Q05919 439 aa2.42□□□□□ -2.02
VPS16YPL045W CRN1Q06440 651 aa2.42□□□□□ -2.02
VPS16YPL045W MRI1Q06489 411 aaKnown RBP2.42□□□□□ -2.02
VPS16YPL045W ATG29Q12092 213 aa2.42□□□□□ -2.02
VPS16YPL045W TRM13Q12383 476 aa2.42□□□□□ -2.02
VPS16YPL045W TSC11P40061 1430 aa2.42□□□□□ -2.02
VPS16YPL045W EST1P17214 699 aaPredicted RBP2.42□□□□□ -2.02
VPS16YPL045W KGD2P19262 463 aaPredicted RBP2.42□□□□□ -2.02
VPS16YPL045W YIH1P25637 258 aa2.42□□□□□ -2.02
VPS16YPL045W MGM1P32266 881 aa2.42□□□□□ -2.02
VPS16YPL045W PDB1P32473 366 aaKnown RBP2.42□□□□□ -2.02
VPS16YPL045W PMT1P33775 817 aa2.42□□□□□ -2.02
VPS16YPL045W MNN2P38069 597 aa2.42□□□□□ -2.02
VPS16YPL045W LNP1P38878 278 aa2.42□□□□□ -2.02
VPS16YPL045W CTK2P46962 323 aa2.42□□□□□ -2.02
VPS16YPL045W NPA3P47122 385 aa2.42□□□□□ -2.02
VPS16YPL045W BUD17P53727 317 aa2.42□□□□□ -2.02
VPS16YPL045W YAT1P80235 687 aa2.42□□□□□ -2.02
VPS16YPL045W RPA49Q01080 415 aaPredicted RBP2.42□□□□□ -2.02
VPS16YPL045W MFM1Q02783 413 aa2.42□□□□□ -2.02
VPS16YPL045W PRP42Q03776 544 aaKnown RBP2.42□□□□□ -2.02
VPS16YPL045W YSH1Q06224 779 aaPredicted RBP2.42□□□□□ -2.02
VPS16YPL045W YDL086WQ07505 273 aa2.42□□□□□ -2.02
VPS16YPL045W FMP45Q07651 309 aa2.42□□□□□ -2.02
VPS16YPL045W YDL242WQ07746 117 aa2.42□□□□□ -2.02
VPS16YPL045W USV1Q12132 391 aa2.42□□□□□ -2.02
VPS16YPL045W FRE6Q12473 712 aa2.42□□□□□ -2.02
VPS16YPL045W DFG16Q99234 619 aa2.42□□□□□ -2.02
VPS16YPL045W SPO14P36126 1683 aa2.41□□□□□ -2.02
VPS16YPL045W COX1P00401 534 aa2.41□□□□□ -2.02
VPS16YPL045W GAL80P04387 435 aa2.41□□□□□ -2.02
VPS16YPL045W YPK1P12688 680 aaKnown RBP2.41□□□□□ -2.02
VPS16YPL045W MDH1P17505 334 aaKnown RBP RIP-Chip data2.41□□□□□ -2.02not detected
VPS16YPL045W AMD2P22580 549 aa2.41□□□□□ -2.02
VPS16YPL045W PUP2P32379 260 aa2.41□□□□□ -2.02
VPS16YPL045W WBP1P33767 430 aaKnown RBP2.41□□□□□ -2.02
VPS16YPL045W CMC1P36064 111 aa2.41□□□□□ -2.02
VPS16YPL045W CCL1P37366 393 aa2.41□□□□□ -2.02
VPS16YPL045W AGP2P38090 596 aa2.41□□□□□ -2.02
VPS16YPL045W POL12P38121 705 aaPredicted RBP2.41□□□□□ -2.02
VPS16YPL045W OTU2P38747 307 aaKnown RBP2.41□□□□□ -2.02
VPS16YPL045W YNG2P38806 282 aaKnown RBP2.41□□□□□ -2.02
VPS16YPL045W FMP52P40008 231 aa2.41□□□□□ -2.02
VPS16YPL045W MEP1P40260 492 aa2.41□□□□□ -2.02
VPS16YPL045W VMA13P41807 478 aaKnown RBP2.41□□□□□ -2.02
VPS16YPL045W MAF1P41910 395 aa2.41□□□□□ -2.02
VPS16YPL045W SAE2P46946 345 aa2.41□□□□□ -2.02
VPS16YPL045W TCB2P48231 1178 aa2.41□□□□□ -2.02
VPS16YPL045W MSE1P48525 536 aa2.41□□□□□ -2.02
VPS16YPL045W STR3P53101 465 aaKnown RBP2.41□□□□□ -2.02
VPS16YPL045W NMA2P53204 395 aa2.41□□□□□ -2.02
VPS16YPL045W BUD22Q04347 519 aaKnown RBP2.41□□□□□ -2.02
VPS16YPL045W SWA2Q06677 668 aa2.41□□□□□ -2.02
VPS16YPL045W LUC7Q07508 261 aaPredicted RBP2.41□□□□□ -2.02
VPS16YPL045W NFI1Q12216 726 aa2.41□□□□□ -2.02
VPS16YPL045W GPM3Q12326 303 aa2.41□□□□□ -2.02
VPS16YPL045W AFI1Q99222 893 aa2.41□□□□□ -2.02
VPS16YPL045W AI5_ALPHAQ9ZZX1 630 aa2.41□□□□□ -2.02
VPS16YPL045W NUP159P40477 1460 aa2.41□□□□□ -2.02
VPS16YPL045W IRC20Q06554 1556 aa2.41□□□□□ -2.02
VPS16YPL045W ABF1P14164 731 aa2.41□□□□□ -2.02
VPS16YPL045W VMA2P16140 517 aaKnown RBP2.41□□□□□ -2.02
VPS16YPL045W SRP54P20424 541 aaKnown RBP2.41□□□□□ -2.02
VPS16YPL045W TRX1P22217 103 aaKnown RBP2.41□□□□□ -2.02
VPS16YPL045W CPR2P23285 205 aa2.41□□□□□ -2.02
VPS16YPL045W CNE1P27825 502 aa2.41□□□□□ -2.02
VPS16YPL045W ERV1P27882 189 aa2.41□□□□□ -2.02
VPS16YPL045W SYN8P31377 255 aa2.41□□□□□ -2.02
VPS16YPL045W TCD2P36101 447 aaKnown RBP2.41□□□□□ -2.02
VPS16YPL045W AFG3P39925 761 aa2.41□□□□□ -2.02
VPS16YPL045W YJL055WP47044 245 aa2.41□□□□□ -2.02
VPS16YPL045W MSY1P48527 492 aa2.41□□□□□ -2.02
VPS16YPL045W CTR1P49573 406 aa2.41□□□□□ -2.02
VPS16YPL045W YIP4P53093 235 aa2.41□□□□□ -2.02
VPS16YPL045W TWF1P53250 332 aa2.41□□□□□ -2.02
VPS16YPL045W YGR151CP53287 111 aa2.41□□□□□ -2.02
VPS16YPL045W RIA1P53893 1110 aa2.41□□□□□ -2.02
VPS16YPL045W YNL092WP53934 400 aa2.41□□□□□ -2.02
VPS16YPL045W CTF4Q01454 927 aa2.41□□□□□ -2.02
VPS16YPL045W UBP16Q02863 499 aa2.41□□□□□ -2.02
VPS16YPL045W YPL107WQ02873 248 aa2.41□□□□□ -2.02
VPS16YPL045W YDR239CQ03780 787 aa2.41□□□□□ -2.02
VPS16YPL045W UFO1Q04511 668 aa2.41□□□□□ -2.02
VPS16YPL045W RQC1Q05468 723 aaKnown RBP2.41□□□□□ -2.02
VPS16YPL045W YDR341CQ05506 607 aaKnown RBP2.41□□□□□ -2.02
VPS16YPL045W YPL216WQ08964 1102 aa2.41□□□□□ -2.02
VPS16YPL045W KEL3Q08979 651 aaPredicted RBP2.41□□□□□ -2.02
VPS16YPL045W SPE3Q12074 293 aaKnown RBP2.41□□□□□ -2.02
VPS16YPL045W AVL9Q12500 764 aa2.41□□□□□ -2.02
VPS16YPL045W LTE1P07866 1435 aa2.4□□□□□ -2.02
VPS16YPL045W AAC1P04710 309 aa2.4□□□□□ -2.03
VPS16YPL045W REC107P21651 314 aa2.4□□□□□ -2.03
VPS16YPL045W VMA16P23968 213 aa2.4□□□□□ -2.03
VPS16YPL045W POT1P27796 417 aaKnown RBP RIP-Chip data2.4□□□□□ -2.03not detected
VPS16YPL045W PAP1P29468 568 aaKnown RBP2.4□□□□□ -2.03
VPS16YPL045W MRE11P32829 692 aa2.4□□□□□ -2.03
VPS16YPL045W SEC66P33754 206 aa2.4□□□□□ -2.03
VPS16YPL045W HES1P35843 434 aa2.4□□□□□ -2.03
VPS16YPL045W APL3P38065 1025 aa2.4□□□□□ -2.03
Retrieved 100 of 5,963 RNA–protein pairs in 21.3 ms