Protein–RNA interactions for Protein: Q05919

VPS38, Vacuolar protein sorting-associated protein 38, yeastyeast

Predictions only

Length 439 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
VPS38Q05919 NSR1YGR159C 1245 nt21.92■■□□□ 1.1
VPS38Q05919 YML009W-BYML009W-B 477 nt21.72■■□□□ 1.07
VPS38Q05919 NOP1YDL014W 984 nt20.92■□□□□ 0.94
VPS38Q05919 MDJ1YFL016C 1536 nt19.87■□□□□ 0.77
VPS38Q05919 YKL036CYKL036C 393 nt18.94■□□□□ 0.62
VPS38Q05919 SRX1YKL086W 384 nt18.29■□□□□ 0.52
VPS38Q05919 YJL027CYJL027C 417 nt18.28■□□□□ 0.52
VPS38Q05919 Q0297Q0297 156 nt18.19■□□□□ 0.5
VPS38Q05919 DBP2YNL112W 1641 nt17.43■□□□□ 0.38
VPS38Q05919 YCR051WYCR051W 669 nt17.33■□□□□ 0.36
VPS38Q05919 YBR190WYBR190W 312 nt17.04■□□□□ 0.32
VPS38Q05919 SCS3YGL126W 1143 nt17.03■□□□□ 0.32
VPS38Q05919 TRN1tP(UGG)A 72 nt16.78■□□□□ 0.28
VPS38Q05919 SUF9tP(UGG)F 72 nt16.78■□□□□ 0.28
VPS38Q05919 SUF8tP(UGG)H 72 nt16.78■□□□□ 0.28
VPS38Q05919 tP(UGG)LtP(UGG)L 72 nt16.78■□□□□ 0.28
VPS38Q05919 SUF7tP(UGG)M 72 nt16.78■□□□□ 0.28
VPS38Q05919 tP(UGG)N1tP(UGG)N1 72 nt16.78■□□□□ 0.28
VPS38Q05919 tP(UGG)N2tP(UGG)N2 72 nt16.78■□□□□ 0.28
VPS38Q05919 tP(UGG)O1tP(UGG)O1 72 nt16.78■□□□□ 0.28
VPS38Q05919 SUF11tP(UGG)O2 72 nt16.78■□□□□ 0.28
VPS38Q05919 RTC3YHR087W 336 nt16.65■□□□□ 0.26
VPS38Q05919 CCC1YLR220W 969 nt16.63■□□□□ 0.25
VPS38Q05919 YOL085CYOL085C 342 nt16.43■□□□□ 0.22
VPS38Q05919 RPP1BYDL130W 321 nt16.33■□□□□ 0.2
VPS38Q05919 RVS167YDR388W 1449 nt16.26■□□□□ 0.19
VPS38Q05919 PKP1YIL042C 1185 nt16.24■□□□□ 0.19
VPS38Q05919 SCJ1YMR214W 1134 nt16.12■□□□□ 0.17
VPS38Q05919 PUT4YOR348C 1884 nt15.8■□□□□ 0.12
VPS38Q05919 tP(UGG)O3tP(UGG)O3 72 nt15.75■□□□□ 0.11
VPS38Q05919 SSA3YBL075C 1950 nt15.71■□□□□ 0.11
VPS38Q05919 PET122YER153C 765 nt15.66■□□□□ 0.1
VPS38Q05919 SHR5YOL110W 714 nt15.6■□□□□ 0.09
VPS38Q05919 URN1YPR152C 1398 nt15.44■□□□□ 0.06
VPS38Q05919 ARE1YCR048W 1833 nt15.38■□□□□ 0.05
VPS38Q05919 SCR1SCR1 522 nt15.36■□□□□ 0.05
VPS38Q05919 DEP1YAL013W 1218 nt15.33■□□□□ 0.04
VPS38Q05919 SAH1YER043C 1350 nt15.3■□□□□ 0.04
VPS38Q05919 OPI9YLR338W 858 nt15.28■□□□□ 0.04
VPS38Q05919 POA1YBR022W 534 nt15.28■□□□□ 0.04
VPS38Q05919 YDJ1YNL064C 1230 nt15.23■□□□□ 0.03
VPS38Q05919 YHR049C-AYHR049C-A 297 nt15.19■□□□□ 0.02
VPS38Q05919 RRN5YLR141W 1092 nt15.17■□□□□ 0.02
VPS38Q05919 ATS1YAL020C 1002 nt15.11■□□□□ 0.01
VPS38Q05919 RPN10YHR200W 807 nt15.08■□□□□ 0
VPS38Q05919 YNL208WYNL208W 600 nt15.02■□□□□ -0
VPS38Q05919 BSC6YOL137W 1494 nt15.01□□□□□ -0.01
VPS38Q05919 GAR1YHR089C 618 nt14.97□□□□□ -0.01
VPS38Q05919 YER088W-BYER088W-B 147 nt14.86□□□□□ -0.03
VPS38Q05919 PUN1YLR414C 792 nt14.82□□□□□ -0.04
VPS38Q05919 BUD23YCR047C 828 nt14.81□□□□□ -0.04
VPS38Q05919 PTC2YER089C 1395 nt14.73□□□□□ -0.05
VPS38Q05919 RSB1YOR049C 1065 nt14.73□□□□□ -0.05
VPS38Q05919 YJR018WYJR018W 363 nt14.69□□□□□ -0.06
VPS38Q05919 SPT5YML010W 3192 nt14.61□□□□□ -0.07
VPS38Q05919 NAB2YGL122C 1578 nt14.59□□□□□ -0.07
VPS38Q05919 TIR1YER011W 765 nt14.48□□□□□ -0.09
VPS38Q05919 SSA1YAL005C 1929 nt14.41□□□□□ -0.1
VPS38Q05919 YJR120WYJR120W 351 nt14.4□□□□□ -0.1
VPS38Q05919 FIS1YIL065C 468 nt14.35□□□□□ -0.11
VPS38Q05919 DAL1YIR027C 1383 nt14.32□□□□□ -0.12
VPS38Q05919 FPR4YLR449W 1179 nt14.3□□□□□ -0.12
VPS38Q05919 SSA4YER103W 1929 nt14.28□□□□□ -0.12
VPS38Q05919 RPP2BYDR382W 333 nt14.27□□□□□ -0.13
VPS38Q05919 INM2YDR287W 879 nt14.21□□□□□ -0.13
VPS38Q05919 PHO4YFR034C 939 nt14.19□□□□□ -0.14
VPS38Q05919 MEP2YNL142W 1500 nt14.14□□□□□ -0.15
VPS38Q05919 SRB2YHR041C 633 nt14.1□□□□□ -0.15
VPS38Q05919 PST2YDR032C 597 nt14.07□□□□□ -0.16
VPS38Q05919 YPS1YLR120C 1710 nt14.06□□□□□ -0.16
VPS38Q05919 YBL100CYBL100C 315 nt14.02□□□□□ -0.17
VPS38Q05919 YHR165W-AYHR165W-A 312 nt13.93□□□□□ -0.18
VPS38Q05919 BDH2YAL061W 1254 nt13.93□□□□□ -0.18
VPS38Q05919 DCW1YKL046C 1350 nt13.93□□□□□ -0.18
VPS38Q05919 YDR095CYDR095C 411 nt13.9□□□□□ -0.18
VPS38Q05919 FUN26YAL022C 1554 nt13.84□□□□□ -0.19
VPS38Q05919 WWM1YFL010C 636 nt13.79□□□□□ -0.2
VPS38Q05919 BDF1YLR399C 2061 nt13.76□□□□□ -0.21
VPS38Q05919 TRM9YML014W 840 nt13.74□□□□□ -0.21
VPS38Q05919 ALF1YNL148C 765 nt13.72□□□□□ -0.21
VPS38Q05919 EMI2YDR516C 1503 nt13.72□□□□□ -0.21
VPS38Q05919 LSM3YLR438C-A 270 nt13.67□□□□□ -0.22
VPS38Q05919 PTP1YDL230W 1008 nt13.65□□□□□ -0.22
VPS38Q05919 YMR090WYMR090W 684 nt13.64□□□□□ -0.23
VPS38Q05919 RPP2AYOL039W 321 nt13.64□□□□□ -0.23
VPS38Q05919 CAC2YML102W 1407 nt13.62□□□□□ -0.23
VPS38Q05919 CCT6YDR188W 1641 nt13.61□□□□□ -0.23
VPS38Q05919 SHU1YHL006C 453 nt13.6□□□□□ -0.23
VPS38Q05919 YBR220CYBR220C 1683 nt13.59□□□□□ -0.23
VPS38Q05919 YDL221WYDL221W 552 nt13.58□□□□□ -0.24
VPS38Q05919 TAT1YBR069C 1860 nt13.57□□□□□ -0.24
VPS38Q05919 YFL021C-AYFL021C-A 855 nt13.55□□□□□ -0.24
VPS38Q05919 YGR021WYGR021W 873 nt13.55□□□□□ -0.24
VPS38Q05919 YAL037C-BYAL037C-B 975 nt13.55□□□□□ -0.24
VPS38Q05919 SIS1YNL007C 1059 nt13.53□□□□□ -0.24
VPS38Q05919 SUF2tP(AGG)C 72 nt13.51□□□□□ -0.25
VPS38Q05919 SUF10tP(AGG)N 72 nt13.51□□□□□ -0.25
VPS38Q05919 HOM6YJR139C 1080 nt13.5□□□□□ -0.25
VPS38Q05919 SDH1YKL148C 1923 nt13.49□□□□□ -0.25
VPS38Q05919 IRC15YPL017C 1500 nt13.41□□□□□ -0.26
Retrieved 100 of 7,029 protein–RNA pairs in 10.7 ms