RNA–Protein interactions for RNA: YGR072W

UPF3, Transcript of Component of the nonsense-mediated mRNA decay (NMD) pathway, yeastyeast

Gene UPF3, Length 1,164 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
UPF3YGR072W EFR3Q03653 782 aaKnown RBP3.67□□□□□ -1.82
UPF3YGR072W YPL216WQ08964 1102 aa3.67□□□□□ -1.82
UPF3YGR072W PRS5Q12265 496 aaKnown RBP3.67□□□□□ -1.82
UPF3YGR072W CPA2P03965 1118 aaKnown RBP3.66□□□□□ -1.82
UPF3YGR072W TPK1P06244 397 aa3.66□□□□□ -1.82
UPF3YGR072W SNF1P06782 633 aaKnown RBP3.66□□□□□ -1.82
UPF3YGR072W SWI4P25302 1093 aaKnown RBP3.66□□□□□ -1.82
UPF3YGR072W MRPL9P31334 269 aa3.66□□□□□ -1.82
UPF3YGR072W MFT1P33441 392 aaKnown RBP3.66□□□□□ -1.82
UPF3YGR072W YBR138CP38277 524 aa3.66□□□□□ -1.82
UPF3YGR072W LNP1P38878 278 aa3.66□□□□□ -1.82
UPF3YGR072W SNO3P43544 222 aa3.66□□□□□ -1.82
UPF3YGR072W SCW4P53334 386 aaKnown RBP3.66□□□□□ -1.82
UPF3YGR072W MEP3P53390 489 aa3.66□□□□□ -1.82
UPF3YGR072W MFM1Q02783 413 aa3.66□□□□□ -1.82
UPF3YGR072W VID22Q05934 901 aa3.66□□□□□ -1.82
UPF3YGR072W AIM6Q07716 390 aa3.66□□□□□ -1.82
UPF3YGR072W TGS1Q12052 315 aa3.66□□□□□ -1.82
UPF3YGR072W NBP2Q12163 236 aa3.66□□□□□ -1.82
UPF3YGR072W ENT1Q12518 454 aa3.66□□□□□ -1.82
UPF3YGR072W RTP1Q12751 981 aa3.66□□□□□ -1.82
UPF3YGR072W YOL087CQ99247 1116 aa3.66□□□□□ -1.82
UPF3YGR072W AQY1P0CD91 305 aa3.65□□□□□ -1.83
UPF3YGR072W PET122P10355 254 aa3.65□□□□□ -1.83
UPF3YGR072W RPC34P32910 317 aa3.65□□□□□ -1.83
UPF3YGR072W LOT5P34234 306 aa3.65□□□□□ -1.83
UPF3YGR072W JNM1P36224 373 aa3.65□□□□□ -1.83
UPF3YGR072W MRPL7P36519 292 aa3.65□□□□□ -1.83
UPF3YGR072W STB5P38699 743 aa3.65□□□□□ -1.83
UPF3YGR072W COS12P53053 380 aa3.65□□□□□ -1.83
UPF3YGR072W YIP4P53093 235 aa3.65□□□□□ -1.83
UPF3YGR072W CBK1P53894 756 aa3.65□□□□□ -1.83
UPF3YGR072W RSC9Q03124 581 aa3.65□□□□□ -1.83
UPF3YGR072W TSR2Q06672 205 aaKnown RBP3.65□□□□□ -1.83
UPF3YGR072W YDR056CQ12025 205 aa3.65□□□□□ -1.83
UPF3YGR072W INH1P01097 85 aa3.64□□□□□ -1.83
UPF3YGR072W CCL1P37366 393 aa3.64□□□□□ -1.83
UPF3YGR072W IFA38P38286 347 aa3.64□□□□□ -1.83
UPF3YGR072W YER010CP40011 234 aa3.64□□□□□ -1.83
UPF3YGR072W RIC1P40395 1056 aa3.64□□□□□ -1.83
UPF3YGR072W IST3P40565 148 aaPredicted RBP3.64□□□□□ -1.83
UPF3YGR072W ZAP1P47043 880 aa3.64□□□□□ -1.83
UPF3YGR072W ICL2Q12031 575 aa3.64□□□□□ -1.83
UPF3YGR072W COX17Q12287 69 aa3.64□□□□□ -1.83
UPF3YGR072W YLR302CO13544 120 aa3.63□□□□□ -1.83
UPF3YGR072W FUM1P08417 488 aaKnown RBP3.63□□□□□ -1.83
UPF3YGR072W SPO16P17122 198 aa3.63□□□□□ -1.83
UPF3YGR072W PRE2P30656 287 aaKnown RBP3.63□□□□□ -1.83
UPF3YGR072W IMP2'P32351 346 aa3.63□□□□□ -1.83
UPF3YGR072W ASK1P35734 292 aa3.63□□□□□ -1.83
UPF3YGR072W APD1P38281 316 aa3.63□□□□□ -1.83
UPF3YGR072W SPC97P38863 823 aa3.63□□□□□ -1.83
UPF3YGR072W PCI8P40512 444 aa3.63□□□□□ -1.83
UPF3YGR072W YJL043WP47053 257 aa3.63□□□□□ -1.83
UPF3YGR072W BNA1P47096 177 aa3.63□□□□□ -1.83
UPF3YGR072W COQ6P53318 479 aa3.63□□□□□ -1.83
UPF3YGR072W ESF2P53743 316 aaKnown RBP3.63□□□□□ -1.83
UPF3YGR072W MTG1Q03151 367 aaPredicted RBP3.63□□□□□ -1.83
UPF3YGR072W CRF1Q04930 467 aa3.63□□□□□ -1.83
UPF3YGR072W YDL073WQ07454 984 aa3.63□□□□□ -1.83
UPF3YGR072W TRM8Q12009 286 aa3.63□□□□□ -1.83
UPF3YGR072W ERG27Q12452 347 aaKnown RBP3.63□□□□□ -1.83
UPF3YGR072W ATP2P00830 511 aaKnown RBP3.62□□□□□ -1.83
UPF3YGR072W GUK1P15454 187 aaKnown RBP3.62□□□□□ -1.83
UPF3YGR072W PDE1P22434 369 aa3.62□□□□□ -1.83
UPF3YGR072W YCR061WP25639 631 aa3.62□□□□□ -1.83
UPF3YGR072W CNE1P27825 502 aa3.62□□□□□ -1.83
UPF3YGR072W PXL1P36166 706 aa3.62□□□□□ -1.83
UPF3YGR072W SDH8P38345 138 aa3.62□□□□□ -1.83
UPF3YGR072W AXL2P38928 823 aa3.62□□□□□ -1.83
UPF3YGR072W NOP16P40007 231 aaKnown RBP3.62□□□□□ -1.83
UPF3YGR072W ARB1P40024 610 aaKnown RBP3.62□□□□□ -1.83
UPF3YGR072W JHD1P40034 492 aa3.62□□□□□ -1.83
UPF3YGR072W YIL161WP40449 235 aaKnown RBP3.62□□□□□ -1.83
UPF3YGR072W ASE1P50275 885 aa3.62□□□□□ -1.83
UPF3YGR072W MDM1Q01846 1127 aa3.62□□□□□ -1.83
UPF3YGR072W GFD1Q04839 188 aaKnown RBP3.62□□□□□ -1.83
UPF3YGR072W NUS1Q12063 375 aa3.62□□□□□ -1.83
UPF3YGR072W MED1Q12321 566 aa3.62□□□□□ -1.83
UPF3YGR072W SUL2Q12325 893 aa3.62□□□□□ -1.83
UPF3YGR072W RVB2Q12464 471 aaKnown RBP3.62□□□□□ -1.83
UPF3YGR072W SKM1Q12469 655 aa3.62□□□□□ -1.83
UPF3YGR072W YMR084WA2P2R3 262 aa3.61□□□□□ -1.83
UPF3YGR072W PRE8P23639 250 aa3.61□□□□□ -1.83
UPF3YGR072W CBF2P32504 956 aa3.61□□□□□ -1.83
UPF3YGR072W CCT4P39078 528 aaKnown RBP3.61□□□□□ -1.83
UPF3YGR072W SRB7P47822 140 aa3.61□□□□□ -1.83
UPF3YGR072W PSP1P50896 841 aaKnown RBP3.61□□□□□ -1.83
UPF3YGR072W COG1P53079 417 aa3.61□□□□□ -1.83
UPF3YGR072W BUD17P53727 317 aa3.61□□□□□ -1.83
UPF3YGR072W BSC5P53755 489 aa3.61□□□□□ -1.83
UPF3YGR072W USA1Q03714 838 aa3.61□□□□□ -1.83
UPF3YGR072W SNO4Q04902 237 aa3.61□□□□□ -1.83
UPF3YGR072W TFC6Q06339 672 aa3.61□□□□□ -1.83
UPF3YGR072W ATG23Q06671 453 aa3.61□□□□□ -1.83
UPF3YGR072W CRT10Q08226 957 aa3.61□□□□□ -1.83
UPF3YGR072W HSP33Q08914 237 aaKnown RBP3.61□□□□□ -1.83
UPF3YGR072W HSP32Q08992 237 aa3.61□□□□□ -1.83
UPF3YGR072W YBR255C-AQ3E776 120 aa3.61□□□□□ -1.83
UPF3YGR072W SEC3P33332 1336 aaKnown RBP3.61□□□□□ -1.83
Retrieved 100 of 5,963 RNA–protein pairs in 14.1 ms