RNA–Protein interactions for RNA: YGR072W

UPF3, Transcript of Component of the nonsense-mediated mRNA decay (NMD) pathway, yeastyeast

Gene UPF3, Length 1,164 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
UPF3YGR072W MTC1P47018 478 aaKnown RBP16.49■□□□□ 0.23
UPF3YGR072W FAP1P53971 965 aa15.77■□□□□ 0.12
UPF3YGR072W PRY3P47033 881 aa14.86□□□□□ -0.03
UPF3YGR072W DRS1P32892 752 aaKnown RBP14.59□□□□□ -0.07
UPF3YGR072W AAD16Q02895 342 aa14.38□□□□□ -0.11
UPF3YGR072W PRI1P10363 409 aa14.37□□□□□ -0.11
UPF3YGR072W YCK3P39962 524 aa14.05□□□□□ -0.16
UPF3YGR072W HAA1Q12753 694 aaKnown RBP13.87□□□□□ -0.19
UPF3YGR072W ISW2Q08773 1120 aa13.83□□□□□ -0.2
UPF3YGR072W RPG1P38249 964 aaKnown RBP13.75□□□□□ -0.21
UPF3YGR072W TSR3Q12094 313 aaKnown RBP13.56□□□□□ -0.24
UPF3YGR072W DIP2Q12220 943 aaPredicted RBP13.09□□□□□ -0.31
UPF3YGR072W MRPL32P25348 183 aa13□□□□□ -0.33
UPF3YGR072W RSE1Q04693 1361 aaKnown RBP12.87□□□□□ -0.35
UPF3YGR072W YGL015CP33199 130 aa12.69□□□□□ -0.38
UPF3YGR072W REB1P21538 810 aa12.54□□□□□ -0.4
UPF3YGR072W RPL17AP05740 184 aaKnown RBP12.53□□□□□ -0.4
UPF3YGR072W RPL17BP46990 184 aaKnown RBP12.53□□□□□ -0.4
UPF3YGR072W AVT3P36062 692 aa12.4□□□□□ -0.42
UPF3YGR072W CDC27P38042 758 aa12.24□□□□□ -0.45
UPF3YGR072W YKR023WP36119 530 aaKnown RBP12.01□□□□□ -0.49
UPF3YGR072W BUD31P25337 157 aaPredicted RBP11.99□□□□□ -0.49
UPF3YGR072W MAP2P38174 421 aaKnown RBP11.94□□□□□ -0.5
UPF3YGR072W UBP10P53874 792 aaPredicted RBP11.94□□□□□ -0.5
UPF3YGR072W SPT21P35209 758 aa11.93□□□□□ -0.5
UPF3YGR072W HOP09932 586 aa11.77□□□□□ -0.53
UPF3YGR072W DCD1P06773 312 aa11.76□□□□□ -0.53
UPF3YGR072W TFC8Q12308 588 aa11.74□□□□□ -0.53
UPF3YGR072W BFR2Q06631 534 aaKnown RBP11.73□□□□□ -0.53
UPF3YGR072W SCY1P53009 804 aa11.55□□□□□ -0.56
UPF3YGR072W TIF4632P39936 914 aaKnown RBP11.46□□□□□ -0.57
UPF3YGR072W SLX5P32828 619 aaKnown RBP11.43□□□□□ -0.58
UPF3YGR072W TGL3P40308 642 aa11.43□□□□□ -0.58
UPF3YGR072W SIS1P25294 352 aaKnown RBP11.34□□□□□ -0.59
UPF3YGR072W RIM101P33400 625 aa11.34□□□□□ -0.59
UPF3YGR072W BCH2P36122 765 aa11.34□□□□□ -0.59
UPF3YGR072W UBP9P39967 754 aa11.31□□□□□ -0.6
UPF3YGR072W EPS1P40557 701 aa10.99□□□□□ -0.65
UPF3YGR072W BDF1P35817 686 aa10.97□□□□□ -0.65
UPF3YGR072W OXP1P28273 1286 aa10.95□□□□□ -0.66
UPF3YGR072W MST1P07236 462 aa10.87□□□□□ -0.67
UPF3YGR072W YBL029C-AQ3E756 94 aa10.84□□□□□ -0.67
UPF3YGR072W PTP3P40048 928 aa10.79□□□□□ -0.68
UPF3YGR072W YOR238WQ08634 303 aa10.78□□□□□ -0.68
UPF3YGR072W YIL055CP40523 627 aaKnown RBP10.76□□□□□ -0.69
UPF3YGR072W VNX1P42839 908 aa10.68□□□□□ -0.7
UPF3YGR072W NSR1P27476 414 aaKnown RBP RIP-Chip data10.67□□□□□ -0.7not detected
UPF3YGR072W BBC1P47068 1157 aa10.62□□□□□ -0.71
UPF3YGR072W RSM7P47150 247 aa10.61□□□□□ -0.71
UPF3YGR072W YAP5P40574 245 aa10.59□□□□□ -0.71
UPF3YGR072W AI2P03876 854 aa10.58□□□□□ -0.72
UPF3YGR072W SPP1Q03012 353 aa10.58□□□□□ -0.72
UPF3YGR072W WSC3Q12215 556 aa10.55□□□□□ -0.72
UPF3YGR072W YAH1Q12184 172 aaKnown RBP10.51□□□□□ -0.73
UPF3YGR072W AIR2Q12476 344 aaKnown RBP10.43□□□□□ -0.74
UPF3YGR072W TIF11P38912 153 aaKnown RBP10.42□□□□□ -0.74
UPF3YGR072W FKH1P40466 484 aa10.38□□□□□ -0.75
UPF3YGR072W GTT3P39996 337 aa10.37□□□□□ -0.75
UPF3YGR072W YJL171CP46992 396 aa10.35□□□□□ -0.75
UPF3YGR072W YLR271WQ06152 274 aa10.3□□□□□ -0.76
UPF3YGR072W PIB1Q06651 286 aa10.28□□□□□ -0.76
UPF3YGR072W LDB19Q12502 818 aa10.28□□□□□ -0.76
UPF3YGR072W ULI1P43604 169 aa10.25□□□□□ -0.77
UPF3YGR072W IOC2Q12072 812 aa10.24□□□□□ -0.77
UPF3YGR072W PSD2P53037 1138 aaKnown RBP10.23□□□□□ -0.77
UPF3YGR072W MRM1P25270 412 aa10.17□□□□□ -0.78
UPF3YGR072W BMT6Q12291 365 aa10.16□□□□□ -0.78
UPF3YGR072W MSB4Q12317 492 aa10.09□□□□□ -0.79
UPF3YGR072W EAP1P36041 632 aaKnown RBP10.05□□□□□ -0.8
UPF3YGR072W SET4P42948 560 aa10.03□□□□□ -0.8
UPF3YGR072W RTG1P32607 177 aa10.02□□□□□ -0.81
UPF3YGR072W TFA1P36100 482 aa10.02□□□□□ -0.81
UPF3YGR072W YOL036WQ08206 761 aa10.02□□□□□ -0.81
UPF3YGR072W TRP5P00931 707 aaKnown RBP10.01□□□□□ -0.81
UPF3YGR072W YMR1P47147 688 aaKnown RBP RIP-Chip data9.97□□□□□ -0.81not detected
UPF3YGR072W VPS29P38759 282 aa9.96□□□□□ -0.82
UPF3YGR072W NCR1Q12200 1170 aa9.96□□□□□ -0.82
UPF3YGR072W DBP1P24784 617 aaKnown RBP9.95□□□□□ -0.82
UPF3YGR072W YFR006WP43590 535 aa9.94□□□□□ -0.82
UPF3YGR072W ARP8Q12386 881 aaKnown RBP RIP-Chip data9.94□□□□□ -0.82not detected
UPF3YGR072W SSP1P38871 571 aa9.93□□□□□ -0.82
UPF3YGR072W YNL035CP53962 389 aaKnown RBP9.91□□□□□ -0.82
UPF3YGR072W CST9Q06032 482 aa9.9□□□□□ -0.82
UPF3YGR072W VMA1P17255 1071 aaKnown RBP9.89□□□□□ -0.83
UPF3YGR072W SEC61P32915 480 aa9.88□□□□□ -0.83
UPF3YGR072W RTG3P38165 486 aa9.88□□□□□ -0.83
UPF3YGR072W STS1P38637 319 aa9.88□□□□□ -0.83
UPF3YGR072W SAM3Q08986 587 aa9.85□□□□□ -0.83
UPF3YGR072W MGA2P40578 1113 aa9.78□□□□□ -0.84
UPF3YGR072W RCR1P38212 213 aa9.75□□□□□ -0.85
UPF3YGR072W TFG1P41895 735 aaPredicted RBP9.75□□□□□ -0.85
UPF3YGR072W DAN4P47179 1161 aa9.75□□□□□ -0.85
UPF3YGR072W SAP30P38429 201 aa9.73□□□□□ -0.85
UPF3YGR072W JIP4Q03361 876 aa9.69□□□□□ -0.86
UPF3YGR072W GYP5Q12344 894 aa9.68□□□□□ -0.86
UPF3YGR072W YDL129WQ07555 291 aa9.66□□□□□ -0.86
UPF3YGR072W BCK2P33306 851 aa9.65□□□□□ -0.86
UPF3YGR072W ABP1P15891 592 aaKnown RBP9.64□□□□□ -0.87
UPF3YGR072W HTA1P04911 132 aaKnown RBP9.62□□□□□ -0.87
UPF3YGR072W HTA2P04912 132 aa9.62□□□□□ -0.87
Retrieved 100 of 5,963 RNA–protein pairs in 12.5 ms