RNA–Protein interactions for RNA: ENSMUST00000041643.3

Pcif1-201, Transcript of Phosphorylated CTD-interacting factor 1, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Pcif1, Length 5,772 nt, Biotype protein coding, Subcellular localisation Cytoplasm .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Pcif1-201ENSMUST00000041643 Ighv2-7A0A075B5Q8 116 aa9.16□□□□□ -0.94
Pcif1-201ENSMUST00000041643 H2al1nQ497L1 109 aa9.16□□□□□ -0.94
Pcif1-201ENSMUST00000041643 CrygcQ61597 174 aa9.16□□□□□ -0.94
Pcif1-201ENSMUST00000041643 Nhlrc1Q8BR37 401 aa9.16□□□□□ -0.94
Pcif1-201ENSMUST00000041643 Igkv3-1A0A075B5P1 119 aa9.16□□□□□ -0.94
Pcif1-201ENSMUST00000041643 Trav14n-2A0A0G2JDF5 121 aa9.16□□□□□ -0.94
Pcif1-201ENSMUST00000041643 Nop10Q9CQS2 64 aa9.16□□□□□ -0.94
Pcif1-201ENSMUST00000041643 Gm933J3QPC1 141 aa9.15□□□□□ -0.94
Pcif1-201ENSMUST00000041643 Gm11733Q8BQP1 125 aa9.15□□□□□ -0.94
Pcif1-201ENSMUST00000041643 IgipA0A1B0GR74 53 aa9.15□□□□□ -0.94
Pcif1-201ENSMUST00000041643 Dmrt3Q80WT2 476 aa9.15□□□□□ -0.94
Pcif1-201ENSMUST00000041643 Ube2cQ9D1C1 179 aa9.15□□□□□ -0.94
Pcif1-201ENSMUST00000041643 Card19Q9D1I2 183 aa9.15□□□□□ -0.94
Pcif1-201ENSMUST00000041643 Gvin1Q80SU7 2427 aa9.15□□□□□ -0.94
Pcif1-201ENSMUST00000041643 Ndufa4Q62425 82 aaKnown RBP9.15□□□□□ -0.94
Pcif1-201ENSMUST00000041643 P01748 117 aa9.15□□□□□ -0.95
Pcif1-201ENSMUST00000041643 P01791 123 aa9.15□□□□□ -0.95
Pcif1-201ENSMUST00000041643 Gm21370Q3T9V6 190 aa9.15□□□□□ -0.95
Pcif1-201ENSMUST00000041643 Zmat4Q8BZ94 229 aa9.15□□□□□ -0.95
Pcif1-201ENSMUST00000041643 Plac1Q9JI83 173 aa9.15□□□□□ -0.95
Pcif1-201ENSMUST00000041643 Igkv3-9A0A140T8P4 119 aa9.14□□□□□ -0.95
Pcif1-201ENSMUST00000041643 Gm45717A0A1B0GT68 152 aa9.14□□□□□ -0.95
Pcif1-201ENSMUST00000041643 Foxi1Q922I5 372 aa9.14□□□□□ -0.95
Pcif1-201ENSMUST00000041643 Sec11aQ9R0P6 179 aa9.14□□□□□ -0.95
Pcif1-201ENSMUST00000041643 Mrps12O35680 139 aa9.14□□□□□ -0.95
Pcif1-201ENSMUST00000041643 Ep300B2RWS6 2412 aa9.14□□□□□ -0.95
Pcif1-201ENSMUST00000041643 Q9CX25 107 aa9.14□□□□□ -0.95
Pcif1-201ENSMUST00000041643 Gm904Q3V2L5 102 aa9.13□□□□□ -0.95
Pcif1-201ENSMUST00000041643 Oxld1Q9CR10 201 aa9.13□□□□□ -0.95
Pcif1-201ENSMUST00000041643 8030423J24RikQ9CX45 142 aa9.13□□□□□ -0.95
Pcif1-201ENSMUST00000041643 PkdrejQ9Z0T6 2126 aa9.13□□□□□ -0.95
Pcif1-201ENSMUST00000041643 Brd3osA0A1B0GRB6 84 aa9.13□□□□□ -0.95
Pcif1-201ENSMUST00000041643 Sptan1P16546 2472 aaKnown RBP9.13□□□□□ -0.95
Pcif1-201ENSMUST00000041643 Tmem238A9JSM3 176 aa9.13□□□□□ -0.95
Pcif1-201ENSMUST00000041643 Trav14-2A0A075B694 121 aa9.13□□□□□ -0.95
Pcif1-201ENSMUST00000041643 SeboxP70368 190 aa9.13□□□□□ -0.95
Pcif1-201ENSMUST00000041643 Rnf183Q8QZS5 190 aa9.13□□□□□ -0.95
Pcif1-201ENSMUST00000041643 Spata45Q9CVW4 97 aa9.13□□□□□ -0.95
Pcif1-201ENSMUST00000041643 Igkv8-34A0A0G2JDU0 121 aa9.12□□□□□ -0.95
Pcif1-201ENSMUST00000041643 Ndufb4Q9CQC7 129 aa9.12□□□□□ -0.95
Pcif1-201ENSMUST00000041643 Tac4Q99N14 128 aa9.12□□□□□ -0.95
Pcif1-201ENSMUST00000041643 Igkv8-24A0A140T8P5 121 aa9.12□□□□□ -0.95
Pcif1-201ENSMUST00000041643 Edn2P22389 175 aa9.12□□□□□ -0.95
Pcif1-201ENSMUST00000041643 March3Q8BRX9 218 aa9.12□□□□□ -0.95
Pcif1-201ENSMUST00000041643 Iglv1A0A075B663 117 aa9.12□□□□□ -0.95
Pcif1-201ENSMUST00000041643 Ccl17F6R5P4 103 aa9.12□□□□□ -0.95
Pcif1-201ENSMUST00000041643 P01811 117 aa9.11□□□□□ -0.95
Pcif1-201ENSMUST00000041643 Tmem86bQ497J1 226 aa9.11□□□□□ -0.95
Pcif1-201ENSMUST00000041643 Cend1Q9JKC6 149 aa9.11□□□□□ -0.95
Pcif1-201ENSMUST00000041643 P01728 117 aa9.11□□□□□ -0.95
Pcif1-201ENSMUST00000041643 Srsf2Q62093 221 aaKnown RBP9.11□□□□□ -0.95
Pcif1-201ENSMUST00000041643 Chac1Q8R3J5 223 aa9.11□□□□□ -0.95
Pcif1-201ENSMUST00000041643 Dppa2Q9CWH0 301 aa9.11□□□□□ -0.95
Pcif1-201ENSMUST00000041643 1810032O08RikE9PZV8 113 aa9.11□□□□□ -0.95
Pcif1-201ENSMUST00000041643 Defb2P82020 71 aa9.11□□□□□ -0.95
Pcif1-201ENSMUST00000041643 Trav9n-2A0A0G2JDP3 113 aa9.11□□□□□ -0.95
Pcif1-201ENSMUST00000041643 Gm867A0A1W2P7T4 151 aa9.11□□□□□ -0.95
Pcif1-201ENSMUST00000041643 Ang4Q3TMQ6 144 aa9.11□□□□□ -0.95
Pcif1-201ENSMUST00000041643 5730522E02RikQ5SP45 163 aa9.11□□□□□ -0.95
Pcif1-201ENSMUST00000041643 Heatr5aQ5PRF0 2038 aa9.11□□□□□ -0.95
Pcif1-201ENSMUST00000041643 1500009C09RikD3YYW9 81 aa9.1□□□□□ -0.95
Pcif1-201ENSMUST00000041643 Defa4P28311 92 aa9.1□□□□□ -0.95
Pcif1-201ENSMUST00000041643 Ankrd39Q9D2X0 183 aa9.1□□□□□ -0.95
Pcif1-201ENSMUST00000041643 Znf664Q4VA44 261 aa9.1□□□□□ -0.95
Pcif1-201ENSMUST00000041643 Odf3l1Q810P2 275 aa9.1□□□□□ -0.95
Pcif1-201ENSMUST00000041643 RetnQ99P87 114 aa9.1□□□□□ -0.95
Pcif1-201ENSMUST00000041643 SNORCQ9CXL7 121 aa9.1□□□□□ -0.95
Pcif1-201ENSMUST00000041643 Piezo1E2JF22 2547 aa9.1□□□□□ -0.95
Pcif1-201ENSMUST00000041643 Col5a1O88207 1838 aa9.1□□□□□ -0.95
Pcif1-201ENSMUST00000041643 Gm21060J3KMU4 56 aa9.1□□□□□ -0.95
Pcif1-201ENSMUST00000041643 Hbb-bsA8DUK4 147 aa9.1□□□□□ -0.95
Pcif1-201ENSMUST00000041643 Tex54G3UW99 86 aa9.1□□□□□ -0.95
Pcif1-201ENSMUST00000041643 Hbb-b1P02088 147 aa9.1□□□□□ -0.95
Pcif1-201ENSMUST00000041643 Olfr311Q5NC59 308 aa9.1□□□□□ -0.95
Pcif1-201ENSMUST00000041643 Akap6E9Q9K8 2307 aa9.09□□□□□ -0.95
Pcif1-201ENSMUST00000041643 P01753 117 aa9.09□□□□□ -0.95
Pcif1-201ENSMUST00000041643 Prss58Q8BW11 241 aa9.09□□□□□ -0.95
Pcif1-201ENSMUST00000041643 Slamf6Q9ET39 351 aa9.09□□□□□ -0.95
Pcif1-201ENSMUST00000041643 Alms1Q8K4E0 3251 aa9.09□□□□□ -0.95
Pcif1-201ENSMUST00000041643 Gm11444F6QMA6 170 aa9.09□□□□□ -0.95
Pcif1-201ENSMUST00000041643 Phpt1Q9DAK9 124 aa9.09□□□□□ -0.95
Pcif1-201ENSMUST00000041643 Hist2h2beQ64524 126 aa9.09□□□□□ -0.95
Pcif1-201ENSMUST00000041643 Abca1P41233 2261 aa9.09□□□□□ -0.95
Pcif1-201ENSMUST00000041643 Ucn2Q99ML8 113 aa9.09□□□□□ -0.95
Pcif1-201ENSMUST00000041643 Rs1Q9Z1L4 224 aa9.09□□□□□ -0.95
Pcif1-201ENSMUST00000041643 Defa20Q45VN2 95 aa9.08□□□□□ -0.96
Pcif1-201ENSMUST00000041643 Igkv3-2A0A075B5P0 119 aa9.08□□□□□ -0.96
Pcif1-201ENSMUST00000041643 Cox17P56394 63 aa9.08□□□□□ -0.96
Pcif1-201ENSMUST00000041643 Edn1P22387 202 aa9.08□□□□□ -0.96
Pcif1-201ENSMUST00000041643 Ighv1-53A0A075B5W3 117 aa9.08□□□□□ -0.96
Pcif1-201ENSMUST00000041643 1700020N15RikL7MTX3 112 aa9.07□□□□□ -0.96
Pcif1-201ENSMUST00000041643 Ndufs7Q9DC70 224 aa9.07□□□□□ -0.96
Pcif1-201ENSMUST00000041643 Cspg4Q8VHY0 2327 aa9.07□□□□□ -0.96
Pcif1-201ENSMUST00000041643 Vmn1r197Q8R265 298 aa9.07□□□□□ -0.96
Pcif1-201ENSMUST00000041643 Bud31Q6PGH1 103 aa9.07□□□□□ -0.96
Pcif1-201ENSMUST00000041643 Tcte2E9PY37 120 aa9.07□□□□□ -0.96
Pcif1-201ENSMUST00000041643 Gm10226O88253 85 aa9.07□□□□□ -0.96
Pcif1-201ENSMUST00000041643 Igll1P20764 209 aa9.07□□□□□ -0.96
Pcif1-201ENSMUST00000041643 Trav6-6A0A075B603 114 aa9.07□□□□□ -0.96
Pcif1-201ENSMUST00000041643 SbsponQ3UPR9 264 aa9.07□□□□□ -0.96
Retrieved 100 of 22,080 RNA–protein pairs in 60.8 ms