Protein–RNA interactions for Protein: P41233

Abca1, ATP-binding cassette sub-family A member 1, mousemouse

Predictions only

Length 2,261 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Abca1P41233 Gm25239-201ENSMUST00000174915 86 ntBASIC32.22■■■□□ 2.75
Abca1P41233 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC29.88■■■□□ 2.37
Abca1P41233 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC29.46■■■□□ 2.31
Abca1P41233 Gm24109-201ENSMUST00000175489 103 ntBASIC28.09■■■□□ 2.09
Abca1P41233 Gm15042-201ENSMUST00000120212 883 ntBASIC27.71■■■□□ 2.03
Abca1P41233 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC27.24■■□□□ 1.95
Abca1P41233 Gm15045-201ENSMUST00000117359 883 ntBASIC27.13■■□□□ 1.93
Abca1P41233 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC27.09■■□□□ 1.93
Abca1P41233 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC27.01■■□□□ 1.91
Abca1P41233 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC26.92■■□□□ 1.9
Abca1P41233 Gm23366-201ENSMUST00000175022 89 ntBASIC26.76■■□□□ 1.87
Abca1P41233 AC153911.1-202ENSMUST00000218534 1034 ntBASIC26.31■■□□□ 1.8
Abca1P41233 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
Abca1P41233 Gm20732-201ENSMUST00000175699 686 ntTSL 3 BASIC26.07■■□□□ 1.76
Abca1P41233 Fgf2-204ENSMUST00000138563 1240 ntAPPRIS P2 TSL 5 BASIC26.04■■□□□ 1.76
Abca1P41233 Fgf18-201ENSMUST00000020507 1086 ntAPPRIS P1 TSL 1 (best) BASIC26■■□□□ 1.75
Abca1P41233 Asmt-201ENSMUST00000178693 1191 ntAPPRIS P1 TSL 1 (best) BASIC25.9■■□□□ 1.74
Abca1P41233 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC25.88■■□□□ 1.73
Abca1P41233 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC25.78■■□□□ 1.72
Abca1P41233 Pkig-201ENSMUST00000064703 1036 ntAPPRIS P1 TSL 1 (best) BASIC25.71■■□□□ 1.71
Abca1P41233 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC25.65■■□□□ 1.7
Abca1P41233 Drap1-203ENSMUST00000113674 939 ntTSL 2 BASIC25.58■■□□□ 1.69
Abca1P41233 Gm25238-201ENSMUST00000174914 89 ntBASIC25.51■■□□□ 1.67
Abca1P41233 Rexo2-201ENSMUST00000034524 1077 ntAPPRIS P1 TSL 1 (best) BASIC25.5■■□□□ 1.67
Abca1P41233 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC25.31■■□□□ 1.64
Abca1P41233 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC25.1■■□□□ 1.61
Abca1P41233 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.6
Abca1P41233 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
Abca1P41233 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC25■■□□□ 1.59
Abca1P41233 Syce2-204ENSMUST00000170296 929 ntAPPRIS ALT2 TSL 2 BASIC24.97■■□□□ 1.59
Abca1P41233 Crk-202ENSMUST00000093115 965 ntTSL 1 (best) BASIC24.92■■□□□ 1.58
Abca1P41233 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC24.91■■□□□ 1.58
Abca1P41233 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC24.81■■□□□ 1.56
Abca1P41233 Tmem240-201ENSMUST00000127188 1308 ntAPPRIS P1 TSL 2 BASIC24.74■■□□□ 1.55
Abca1P41233 Crk-204ENSMUST00000108426 671 ntTSL 3 BASIC24.72■■□□□ 1.55
Abca1P41233 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC24.67■■□□□ 1.54
Abca1P41233 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC24.63■■□□□ 1.53
Abca1P41233 Rnf149-204ENSMUST00000195705 389 ntTSL 3 BASIC24.58■■□□□ 1.52
Abca1P41233 Gm25262-201ENSMUST00000174934 133 ntBASIC24.55■■□□□ 1.52
Abca1P41233 Psd-208ENSMUST00000224556 2034 ntBASIC24.45■■□□□ 1.5
Abca1P41233 Tprgl-202ENSMUST00000105639 642 ntTSL 5 BASIC24.42■■□□□ 1.5
Abca1P41233 Ppp2cb-201ENSMUST00000009774 1469 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
Abca1P41233 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC24.4■■□□□ 1.5
Abca1P41233 Gm27325-201ENSMUST00000175467 74 ntBASIC24.37■■□□□ 1.49
Abca1P41233 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
Abca1P41233 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC24.34■■□□□ 1.49
Abca1P41233 Drap1-201ENSMUST00000025853 992 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
Abca1P41233 B430219N15Rik-202ENSMUST00000180853 1105 ntBASIC24.27■■□□□ 1.48
Abca1P41233 Kctd9-204ENSMUST00000150768 1302 ntAPPRIS P1 TSL 5 BASIC24.24■■□□□ 1.47
Abca1P41233 Gm26115-201ENSMUST00000175605 87 ntBASIC24.15■■□□□ 1.46
Abca1P41233 Mapk3-201ENSMUST00000050201 1267 ntAPPRIS ALT2 TSL 3 BASIC24.13■■□□□ 1.45
Abca1P41233 Glrx5-203ENSMUST00000223244 793 ntTSL 5 BASIC24.12■■□□□ 1.45
Abca1P41233 BC030336-205ENSMUST00000208454 813 ntTSL 2 BASIC24.11■■□□□ 1.45
Abca1P41233 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC24.07■■□□□ 1.44
Abca1P41233 Gm8109-201ENSMUST00000194076 746 ntBASIC24.05■■□□□ 1.44
Abca1P41233 Rab21-202ENSMUST00000218831 843 ntBASIC24.05■■□□□ 1.44
Abca1P41233 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC24.02■■□□□ 1.44
Abca1P41233 Gsx2-202ENSMUST00000160104 1182 ntTSL 1 (best) BASIC23.95■■□□□ 1.43
Abca1P41233 Bcl7c-201ENSMUST00000061468 1132 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
Abca1P41233 Pkdcc-204ENSMUST00000170794 2446 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
Abca1P41233 Olfm1-203ENSMUST00000102879 1072 ntTSL 1 (best) BASIC23.91■■□□□ 1.42
Abca1P41233 Cacng8-201ENSMUST00000092351 1380 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
Abca1P41233 Fam122a-201ENSMUST00000099556 855 ntAPPRIS P1 BASIC23.8■■□□□ 1.4
Abca1P41233 Fam220a-203ENSMUST00000118121 919 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
Abca1P41233 Zic2-201ENSMUST00000075888 2440 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
Abca1P41233 Crebl2-202ENSMUST00000111937 612 ntTSL 3 BASIC23.74■■□□□ 1.39
Abca1P41233 Sh3glb2-214ENSMUST00000163668 1733 ntTSL 5 BASIC23.73■■□□□ 1.39
Abca1P41233 Svbp-202ENSMUST00000097908 832 ntTSL 2 BASIC23.7■■□□□ 1.38
Abca1P41233 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC23.64■■□□□ 1.38
Abca1P41233 B3gat3-201ENSMUST00000096243 1601 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
Abca1P41233 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
Abca1P41233 Tmed7-201ENSMUST00000036030 1436 ntTSL 5 BASIC23.6■■□□□ 1.37
Abca1P41233 Mbd2-202ENSMUST00000114946 1290 ntTSL 1 (best) BASIC23.53■■□□□ 1.36
Abca1P41233 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
Abca1P41233 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC23.48■■□□□ 1.35
Abca1P41233 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC23.46■■□□□ 1.35
Abca1P41233 Gpr137c-202ENSMUST00000147957 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC23.45■■□□□ 1.35
Abca1P41233 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC23.45■■□□□ 1.34
Abca1P41233 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC23.43■■□□□ 1.34
Abca1P41233 Nrgn-201ENSMUST00000065668 1453 ntAPPRIS P1 TSL 1 (best) BASIC23.42■■□□□ 1.34
Abca1P41233 Maz-202ENSMUST00000205461 796 ntTSL 5 BASIC23.4■■□□□ 1.34
Abca1P41233 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC23.4■■□□□ 1.34
Abca1P41233 Ino80b-202ENSMUST00000113935 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC23.37■■□□□ 1.33
Abca1P41233 Pabpn1-201ENSMUST00000022808 1030 ntAPPRIS P2 TSL 1 (best) BASIC23.36■■□□□ 1.33
Abca1P41233 Enho-201ENSMUST00000127306 1269 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
Abca1P41233 Vps37d-201ENSMUST00000067935 1544 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
Abca1P41233 Gm17082-201ENSMUST00000166043 1091 ntBASIC23.3■■□□□ 1.32
Abca1P41233 Wtip-201ENSMUST00000038537 1962 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
Abca1P41233 Tmed7-203ENSMUST00000151189 1348 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
Abca1P41233 Clec2l-201ENSMUST00000114874 1428 ntAPPRIS P1 TSL 2 BASIC23.12■■□□□ 1.29
Abca1P41233 Gm12339-201ENSMUST00000127424 728 ntTSL 3 BASIC23.11■■□□□ 1.29
Abca1P41233 Gm24804-201ENSMUST00000174982 85 ntBASIC23.11■■□□□ 1.29
Abca1P41233 Ubtd2-201ENSMUST00000051053 1012 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
Abca1P41233 Nkx1-1-201ENSMUST00000173348 1209 ntAPPRIS P1 TSL 5 BASIC23.09■■□□□ 1.29
Abca1P41233 Gm27322-201ENSMUST00000184007 104 ntBASIC23.04■■□□□ 1.28
Abca1P41233 Agap3-206ENSMUST00000212381 1191 ntTSL 5 BASIC23.04■■□□□ 1.28
Abca1P41233 Fcho2-204ENSMUST00000179563 1586 ntTSL 5 BASIC23.03■■□□□ 1.28
Abca1P41233 Bzw1-202ENSMUST00000186949 1492 ntTSL 5 BASIC23.03■■□□□ 1.28
Abca1P41233 Hnrnpd-203ENSMUST00000112939 1670 ntAPPRIS ALT2 TSL 5 BASIC23.02■■□□□ 1.27
Abca1P41233 Atoh7-201ENSMUST00000044059 1629 ntAPPRIS P1 BASIC23.01■■□□□ 1.27
Retrieved 100 of 76,532 protein–RNA pairs in 14.7 ms