Protein–RNA interactions for Protein: A0A075B603

Trav6-6, T cell receptor alpha variable 6-6 (Fragment), mousemouse

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav6-6A0A075B603 Gm25239-201ENSMUST00000174915 86 ntBASIC25.41■■□□□ 1.66
Trav6-6A0A075B603 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC24.99■■□□□ 1.59
Trav6-6A0A075B603 Pkdcc-204ENSMUST00000170794 2446 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
Trav6-6A0A075B603 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC24.07■■□□□ 1.44
Trav6-6A0A075B603 Zic2-201ENSMUST00000075888 2440 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
Trav6-6A0A075B603 Psd-208ENSMUST00000224556 2034 ntBASIC23.77■■□□□ 1.4
Trav6-6A0A075B603 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
Trav6-6A0A075B603 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
Trav6-6A0A075B603 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
Trav6-6A0A075B603 Gm15042-201ENSMUST00000120212 883 ntBASIC22.74■■□□□ 1.23
Trav6-6A0A075B603 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
Trav6-6A0A075B603 Rab12-201ENSMUST00000070538 2057 ntAPPRIS ALT2 TSL 1 (best) BASIC22.65■■□□□ 1.22
Trav6-6A0A075B603 Tmem259-201ENSMUST00000052885 2225 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
Trav6-6A0A075B603 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
Trav6-6A0A075B603 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC22.5■■□□□ 1.19
Trav6-6A0A075B603 Foxd3-201ENSMUST00000087285 2324 ntAPPRIS P1 BASIC22.46■■□□□ 1.19
Trav6-6A0A075B603 Gm12100-201ENSMUST00000150255 1933 ntTSL 1 (best) BASIC22.42■■□□□ 1.18
Trav6-6A0A075B603 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
Trav6-6A0A075B603 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
Trav6-6A0A075B603 Gm15045-201ENSMUST00000117359 883 ntBASIC22.27■■□□□ 1.16
Trav6-6A0A075B603 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
Trav6-6A0A075B603 Wtip-201ENSMUST00000038537 1962 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
Trav6-6A0A075B603 Gm26588-201ENSMUST00000181064 2098 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
Trav6-6A0A075B603 Msantd2-201ENSMUST00000048604 2291 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.15
Trav6-6A0A075B603 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC22.14■■□□□ 1.13
Trav6-6A0A075B603 Six3-202ENSMUST00000175898 2419 ntAPPRIS P2 TSL 1 (best) BASIC22■■□□□ 1.11
Trav6-6A0A075B603 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
Trav6-6A0A075B603 Mapkapk5-201ENSMUST00000031410 2234 ntAPPRIS P2 TSL 1 (best) BASIC21.9■■□□□ 1.1
Trav6-6A0A075B603 Gm42596-201ENSMUST00000196305 1958 ntBASIC21.85■■□□□ 1.09
Trav6-6A0A075B603 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.08
Trav6-6A0A075B603 Gm24109-201ENSMUST00000175489 103 ntBASIC21.73■■□□□ 1.07
Trav6-6A0A075B603 Ube2ql1-201ENSMUST00000065118 2674 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Trav6-6A0A075B603 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC21.61■■□□□ 1.05
Trav6-6A0A075B603 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
Trav6-6A0A075B603 Tcfl5-201ENSMUST00000037877 2225 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
Trav6-6A0A075B603 Gm26699-201ENSMUST00000180825 2291 ntTSL 5 BASIC21.55■■□□□ 1.04
Trav6-6A0A075B603 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC21.54■■□□□ 1.04
Trav6-6A0A075B603 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC21.51■■□□□ 1.03
Trav6-6A0A075B603 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC21.51■■□□□ 1.03
Trav6-6A0A075B603 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC21.48■■□□□ 1.03
Trav6-6A0A075B603 Sept3-202ENSMUST00000116423 2467 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
Trav6-6A0A075B603 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC21.42■■□□□ 1.02
Trav6-6A0A075B603 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
Trav6-6A0A075B603 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC21.38■■□□□ 1.01
Trav6-6A0A075B603 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC21.37■■□□□ 1.01
Trav6-6A0A075B603 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Trav6-6A0A075B603 Gm23366-201ENSMUST00000175022 89 ntBASIC21.35■■□□□ 1.01
Trav6-6A0A075B603 Brsk2-203ENSMUST00000078200 2363 ntAPPRIS P4 TSL 1 (best) BASIC21.31■■□□□ 1
Trav6-6A0A075B603 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC21.29■■□□□ 1
Trav6-6A0A075B603 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Trav6-6A0A075B603 Hnrnpa0-201ENSMUST00000007980 2678 ntAPPRIS P1 BASIC21.22■□□□□ 0.99
Trav6-6A0A075B603 Epcam-201ENSMUST00000053577 2040 ntAPPRIS P1 TSL 5 BASIC21.2■□□□□ 0.98
Trav6-6A0A075B603 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Trav6-6A0A075B603 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Trav6-6A0A075B603 Ldb1-208ENSMUST00000185355 2088 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
Trav6-6A0A075B603 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC21.05■□□□□ 0.96
Trav6-6A0A075B603 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
Trav6-6A0A075B603 Samd1-201ENSMUST00000095228 2071 ntAPPRIS P1 TSL 5 BASIC20.97■□□□□ 0.95
Trav6-6A0A075B603 Stk24-201ENSMUST00000079817 2676 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Trav6-6A0A075B603 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC20.93■□□□□ 0.94
Trav6-6A0A075B603 Gm10524-201ENSMUST00000181931 1893 ntBASIC20.92■□□□□ 0.94
Trav6-6A0A075B603 AC153911.1-202ENSMUST00000218534 1034 ntBASIC20.89■□□□□ 0.93
Trav6-6A0A075B603 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Trav6-6A0A075B603 Cdk9-201ENSMUST00000009699 1733 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Trav6-6A0A075B603 Fam196a-201ENSMUST00000171394 2490 ntAPPRIS P1 TSL 5 BASIC20.86■□□□□ 0.93
Trav6-6A0A075B603 Rundc3a-201ENSMUST00000006750 2046 ntAPPRIS P2 TSL 1 (best) BASIC20.84■□□□□ 0.93
Trav6-6A0A075B603 St3gal5-201ENSMUST00000069994 2258 ntAPPRIS P3 TSL 1 (best) BASIC20.79■□□□□ 0.92
Trav6-6A0A075B603 Tmeff1-201ENSMUST00000030032 2461 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
Trav6-6A0A075B603 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
Trav6-6A0A075B603 Ccdc9-202ENSMUST00000118976 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
Trav6-6A0A075B603 Wsb2-201ENSMUST00000031309 2421 ntAPPRIS P2 TSL 1 (best) BASIC20.7■□□□□ 0.9
Trav6-6A0A075B603 Tlx1-201ENSMUST00000026236 2065 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Trav6-6A0A075B603 Ap1ar-210ENSMUST00000200409 2580 ntTSL 5 BASIC20.63■□□□□ 0.89
Trav6-6A0A075B603 Reps1-206ENSMUST00000154718 2402 ntTSL 5 BASIC20.62■□□□□ 0.89
Trav6-6A0A075B603 Sh3glb2-201ENSMUST00000028214 1810 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Trav6-6A0A075B603 Gm26859-201ENSMUST00000181743 1852 ntTSL 5 BASIC20.58■□□□□ 0.89
Trav6-6A0A075B603 Fndc10-201ENSMUST00000099265 2140 ntAPPRIS P1 BASIC20.57■□□□□ 0.88
Trav6-6A0A075B603 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Trav6-6A0A075B603 Rpia-201ENSMUST00000066134 1829 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Trav6-6A0A075B603 Nrg3-202ENSMUST00000168810 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
Trav6-6A0A075B603 Cxxc4-203ENSMUST00000181904 5694 ntAPPRIS P2 TSL 5 BASIC20.53■□□□□ 0.88
Trav6-6A0A075B603 Fam241a-202ENSMUST00000199273 2234 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Trav6-6A0A075B603 Ccm2l-201ENSMUST00000109800 2158 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
Trav6-6A0A075B603 Gnai2-201ENSMUST00000055704 2215 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Trav6-6A0A075B603 Atp1b3-201ENSMUST00000034983 1994 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Trav6-6A0A075B603 CT025624.2-201ENSMUST00000223609 1909 ntBASIC20.41■□□□□ 0.86
Trav6-6A0A075B603 Nkx3-2-201ENSMUST00000060820 1718 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Trav6-6A0A075B603 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Trav6-6A0A075B603 Mta3-202ENSMUST00000112349 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
Trav6-6A0A075B603 Ldb1-207ENSMUST00000156585 2014 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
Trav6-6A0A075B603 Rab12-205ENSMUST00000167962 2010 ntAPPRIS P2 TSL 1 (best) BASIC20.31■□□□□ 0.84
Trav6-6A0A075B603 Ywhaz-204ENSMUST00000110362 2122 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Trav6-6A0A075B603 Atoh7-201ENSMUST00000044059 1629 ntAPPRIS P1 BASIC20.27■□□□□ 0.84
Trav6-6A0A075B603 Trabd-203ENSMUST00000165690 1941 ntAPPRIS P2 TSL 1 (best) BASIC20.27■□□□□ 0.84
Trav6-6A0A075B603 Hoxd8-201ENSMUST00000019749 2634 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.84
Trav6-6A0A075B603 Plin1-206ENSMUST00000205915 2817 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Trav6-6A0A075B603 Zxdb-201ENSMUST00000101388 5619 ntAPPRIS P1 BASIC20.2■□□□□ 0.82
Trav6-6A0A075B603 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC20.19■□□□□ 0.82
Trav6-6A0A075B603 Dennd1b-209ENSMUST00000200533 1853 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
Trav6-6A0A075B603 Drap1-201ENSMUST00000025853 992 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Retrieved 100 of 76,532 protein–RNA pairs in 26.2 ms