Protein–RNA interactions for Protein: A0A075B603

Trav6-6, T cell receptor alpha variable 6-6 (Fragment), mousemouse

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav6-6A0A075B603 Gm25239-201ENSMUST00000174915 86 ntBASIC25,41■■□□□ 1,66
Trav6-6A0A075B603 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC24,99■■□□□ 1,59
Trav6-6A0A075B603 Pkdcc-204ENSMUST00000170794 2446 ntAPPRIS P1 TSL 1 (best) BASIC24,52■■□□□ 1,52
Trav6-6A0A075B603 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC24,07■■□□□ 1,44
Trav6-6A0A075B603 Zic2-201ENSMUST00000075888 2440 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1,43
Trav6-6A0A075B603 Psd-208ENSMUST00000224556 2034 ntBASIC23,77■■□□□ 1,4
Trav6-6A0A075B603 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC23,76■■□□□ 1,39
Trav6-6A0A075B603 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC23,23■■□□□ 1,31
Trav6-6A0A075B603 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC23,07■■□□□ 1,28
Trav6-6A0A075B603 Gm15042-201ENSMUST00000120212 883 ntBASIC22,74■■□□□ 1,23
Trav6-6A0A075B603 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC22,69■■□□□ 1,22
Trav6-6A0A075B603 Rab12-201ENSMUST00000070538 2057 ntAPPRIS ALT2 TSL 1 (best) BASIC22,65■■□□□ 1,22
Trav6-6A0A075B603 Tmem259-201ENSMUST00000052885 2225 ntAPPRIS P1 TSL 1 (best) BASIC22,65■■□□□ 1,22
Trav6-6A0A075B603 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC22,57■■□□□ 1,2
Trav6-6A0A075B603 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC22,5■■□□□ 1,19
Trav6-6A0A075B603 Foxd3-201ENSMUST00000087285 2324 ntAPPRIS P1 BASIC22,46■■□□□ 1,19
Trav6-6A0A075B603 Gm12100-201ENSMUST00000150255 1933 ntTSL 1 (best) BASIC22,42■■□□□ 1,18
Trav6-6A0A075B603 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC22,41■■□□□ 1,18
Trav6-6A0A075B603 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC22,36■■□□□ 1,17
Trav6-6A0A075B603 Gm15045-201ENSMUST00000117359 883 ntBASIC22,27■■□□□ 1,16
Trav6-6A0A075B603 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC22,25■■□□□ 1,15
Trav6-6A0A075B603 Wtip-201ENSMUST00000038537 1962 ntAPPRIS P1 TSL 1 (best) BASIC22,23■■□□□ 1,15
Trav6-6A0A075B603 Gm26588-201ENSMUST00000181064 2098 ntTSL 1 (best) BASIC22,22■■□□□ 1,15
Trav6-6A0A075B603 Msantd2-201ENSMUST00000048604 2291 ntAPPRIS P1 TSL 1 (best) BASIC22,2■■□□□ 1,15
Trav6-6A0A075B603 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC22,14■■□□□ 1,13
Trav6-6A0A075B603 Six3-202ENSMUST00000175898 2419 ntAPPRIS P2 TSL 1 (best) BASIC22■■□□□ 1,11
Trav6-6A0A075B603 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC21,92■■□□□ 1,1
Trav6-6A0A075B603 Mapkapk5-201ENSMUST00000031410 2234 ntAPPRIS P2 TSL 1 (best) BASIC21,9■■□□□ 1,1
Trav6-6A0A075B603 Gm42596-201ENSMUST00000196305 1958 ntBASIC21,85■■□□□ 1,09
Trav6-6A0A075B603 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC21,77■■□□□ 1,08
Trav6-6A0A075B603 Gm24109-201ENSMUST00000175489 103 ntBASIC21,73■■□□□ 1,07
Trav6-6A0A075B603 Ube2ql1-201ENSMUST00000065118 2674 ntAPPRIS P1 TSL 1 (best) BASIC21,7■■□□□ 1,06
Trav6-6A0A075B603 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC21,61■■□□□ 1,05
Trav6-6A0A075B603 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC21,58■■□□□ 1,05
Trav6-6A0A075B603 Tcfl5-201ENSMUST00000037877 2225 ntAPPRIS P1 TSL 1 (best) BASIC21,58■■□□□ 1,05
Trav6-6A0A075B603 Gm26699-201ENSMUST00000180825 2291 ntTSL 5 BASIC21,55■■□□□ 1,04
Trav6-6A0A075B603 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC21,54■■□□□ 1,04
Trav6-6A0A075B603 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC21,51■■□□□ 1,03
Trav6-6A0A075B603 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC21,51■■□□□ 1,03
Trav6-6A0A075B603 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC21,48■■□□□ 1,03
Trav6-6A0A075B603 Sept3-202ENSMUST00000116423 2467 ntAPPRIS P1 TSL 1 (best) BASIC21,47■■□□□ 1,03
Trav6-6A0A075B603 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC21,42■■□□□ 1,02
Trav6-6A0A075B603 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC21,38■■□□□ 1,01
Trav6-6A0A075B603 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC21,38■■□□□ 1,01
Trav6-6A0A075B603 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC21,37■■□□□ 1,01
Trav6-6A0A075B603 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC21,36■■□□□ 1,01
Trav6-6A0A075B603 Gm23366-201ENSMUST00000175022 89 ntBASIC21,35■■□□□ 1,01
Trav6-6A0A075B603 Brsk2-203ENSMUST00000078200 2363 ntAPPRIS P4 TSL 1 (best) BASIC21,31■■□□□ 1
Trav6-6A0A075B603 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC21,29■■□□□ 1
Trav6-6A0A075B603 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC21,28■■□□□ 1
Trav6-6A0A075B603 Hnrnpa0-201ENSMUST00000007980 2678 ntAPPRIS P1 BASIC21,22■□□□□ 0,99
Trav6-6A0A075B603 Epcam-201ENSMUST00000053577 2040 ntAPPRIS P1 TSL 5 BASIC21,2■□□□□ 0,98
Trav6-6A0A075B603 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC21,18■□□□□ 0,98
Trav6-6A0A075B603 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC21,17■□□□□ 0,98
Trav6-6A0A075B603 Ldb1-208ENSMUST00000185355 2088 ntTSL 1 (best) BASIC21,14■□□□□ 0,97
Trav6-6A0A075B603 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC21,05■□□□□ 0,96
Trav6-6A0A075B603 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC21,03■□□□□ 0,96
Trav6-6A0A075B603 Samd1-201ENSMUST00000095228 2071 ntAPPRIS P1 TSL 5 BASIC20,97■□□□□ 0,95
Trav6-6A0A075B603 Stk24-201ENSMUST00000079817 2676 ntAPPRIS P1 TSL 1 (best) BASIC20,93■□□□□ 0,94
Trav6-6A0A075B603 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC20,93■□□□□ 0,94
Trav6-6A0A075B603 Gm10524-201ENSMUST00000181931 1893 ntBASIC20,92■□□□□ 0,94
Trav6-6A0A075B603 AC153911.1-202ENSMUST00000218534 1034 ntBASIC20,89■□□□□ 0,93
Trav6-6A0A075B603 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC20,88■□□□□ 0,93
Trav6-6A0A075B603 Cdk9-201ENSMUST00000009699 1733 ntAPPRIS P1 TSL 1 (best) BASIC20,87■□□□□ 0,93
Trav6-6A0A075B603 Fam196a-201ENSMUST00000171394 2490 ntAPPRIS P1 TSL 5 BASIC20,86■□□□□ 0,93
Trav6-6A0A075B603 Rundc3a-201ENSMUST00000006750 2046 ntAPPRIS P2 TSL 1 (best) BASIC20,84■□□□□ 0,93
Trav6-6A0A075B603 St3gal5-201ENSMUST00000069994 2258 ntAPPRIS P3 TSL 1 (best) BASIC20,79■□□□□ 0,92
Trav6-6A0A075B603 Tmeff1-201ENSMUST00000030032 2461 ntAPPRIS P1 TSL 1 (best) BASIC20,77■□□□□ 0,91
Trav6-6A0A075B603 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC20,75■□□□□ 0,91
Trav6-6A0A075B603 Ccdc9-202ENSMUST00000118976 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC20,75■□□□□ 0,91
Trav6-6A0A075B603 Wsb2-201ENSMUST00000031309 2421 ntAPPRIS P2 TSL 1 (best) BASIC20,7■□□□□ 0,9
Trav6-6A0A075B603 Tlx1-201ENSMUST00000026236 2065 ntAPPRIS P1 TSL 1 (best) BASIC20,65■□□□□ 0,9
Trav6-6A0A075B603 Ap1ar-210ENSMUST00000200409 2580 ntTSL 5 BASIC20,63■□□□□ 0,89
Trav6-6A0A075B603 Reps1-206ENSMUST00000154718 2402 ntTSL 5 BASIC20,62■□□□□ 0,89
Trav6-6A0A075B603 Sh3glb2-201ENSMUST00000028214 1810 ntAPPRIS P1 TSL 1 (best) BASIC20,6■□□□□ 0,89
Trav6-6A0A075B603 Gm26859-201ENSMUST00000181743 1852 ntTSL 5 BASIC20,58■□□□□ 0,89
Trav6-6A0A075B603 Fndc10-201ENSMUST00000099265 2140 ntAPPRIS P1 BASIC20,57■□□□□ 0,88
Trav6-6A0A075B603 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC20,57■□□□□ 0,88
Trav6-6A0A075B603 Rpia-201ENSMUST00000066134 1829 ntAPPRIS P1 TSL 1 (best) BASIC20,57■□□□□ 0,88
Trav6-6A0A075B603 Nrg3-202ENSMUST00000168810 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC20,56■□□□□ 0,88
Trav6-6A0A075B603 Cxxc4-203ENSMUST00000181904 5694 ntAPPRIS P2 TSL 5 BASIC20,53■□□□□ 0,88
Trav6-6A0A075B603 Fam241a-202ENSMUST00000199273 2234 ntAPPRIS P1 TSL 1 (best) BASIC20,5■□□□□ 0,87
Trav6-6A0A075B603 Ccm2l-201ENSMUST00000109800 2158 ntAPPRIS P1 TSL 5 BASIC20,46■□□□□ 0,87
Trav6-6A0A075B603 Gnai2-201ENSMUST00000055704 2215 ntAPPRIS P1 TSL 1 (best) BASIC20,44■□□□□ 0,86
Trav6-6A0A075B603 Atp1b3-201ENSMUST00000034983 1994 ntAPPRIS P1 TSL 1 (best) BASIC20,44■□□□□ 0,86
Trav6-6A0A075B603 CT025624.2-201ENSMUST00000223609 1909 ntBASIC20,41■□□□□ 0,86
Trav6-6A0A075B603 Nkx3-2-201ENSMUST00000060820 1718 ntAPPRIS P1 TSL 1 (best) BASIC20,4■□□□□ 0,86
Trav6-6A0A075B603 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC20,38■□□□□ 0,85
Trav6-6A0A075B603 Mta3-202ENSMUST00000112349 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC20,36■□□□□ 0,85
Trav6-6A0A075B603 Ldb1-207ENSMUST00000156585 2014 ntTSL 1 (best) BASIC20,34■□□□□ 0,85
Trav6-6A0A075B603 Rab12-205ENSMUST00000167962 2010 ntAPPRIS P2 TSL 1 (best) BASIC20,31■□□□□ 0,84
Trav6-6A0A075B603 Ywhaz-204ENSMUST00000110362 2122 ntAPPRIS P1 TSL 1 (best) BASIC20,29■□□□□ 0,84
Trav6-6A0A075B603 Atoh7-201ENSMUST00000044059 1629 ntAPPRIS P1 BASIC20,27■□□□□ 0,84
Trav6-6A0A075B603 Trabd-203ENSMUST00000165690 1941 ntAPPRIS P2 TSL 1 (best) BASIC20,27■□□□□ 0,84
Trav6-6A0A075B603 Hoxd8-201ENSMUST00000019749 2634 ntAPPRIS P3 TSL 1 (best) BASIC20,27■□□□□ 0,84
Trav6-6A0A075B603 Plin1-206ENSMUST00000205915 2817 ntAPPRIS P1 TSL 1 (best) BASIC20,26■□□□□ 0,83
Trav6-6A0A075B603 Zxdb-201ENSMUST00000101388 5619 ntAPPRIS P1 BASIC20,2■□□□□ 0,82
Trav6-6A0A075B603 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC20,19■□□□□ 0,82
Trav6-6A0A075B603 Dennd1b-209ENSMUST00000200533 1853 ntTSL 1 (best) BASIC20,18■□□□□ 0,82
Trav6-6A0A075B603 Drap1-201ENSMUST00000025853 992 ntAPPRIS P1 TSL 1 (best) BASIC20,16■□□□□ 0,82
Retrieved 100 of 76,532 protein–RNA pairs in 11,6 ms