Protein–RNA interactions for Protein: A0A0G2JDP3

Trav9n-2, T cell receptor alpha variable 9D-2 (Fragment), mousemouse

Predictions only

Length 113 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav9n-2A0A0G2JDP3 Gm25239-201ENSMUST00000174915 86 ntBASIC26.26■■□□□ 1.79
Trav9n-2A0A0G2JDP3 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
Trav9n-2A0A0G2JDP3 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC24.11■■□□□ 1.45
Trav9n-2A0A0G2JDP3 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
Trav9n-2A0A0G2JDP3 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
Trav9n-2A0A0G2JDP3 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC23.81■■□□□ 1.4
Trav9n-2A0A0G2JDP3 Gm15042-201ENSMUST00000120212 883 ntBASIC23.33■■□□□ 1.33
Trav9n-2A0A0G2JDP3 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
Trav9n-2A0A0G2JDP3 Psd-208ENSMUST00000224556 2034 ntBASIC22.91■■□□□ 1.26
Trav9n-2A0A0G2JDP3 Gm15045-201ENSMUST00000117359 883 ntBASIC22.85■■□□□ 1.25
Trav9n-2A0A0G2JDP3 Gm24109-201ENSMUST00000175489 103 ntBASIC22.55■■□□□ 1.2
Trav9n-2A0A0G2JDP3 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC22.54■■□□□ 1.2
Trav9n-2A0A0G2JDP3 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
Trav9n-2A0A0G2JDP3 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC22.46■■□□□ 1.19
Trav9n-2A0A0G2JDP3 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
Trav9n-2A0A0G2JDP3 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC22.11■■□□□ 1.13
Trav9n-2A0A0G2JDP3 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
Trav9n-2A0A0G2JDP3 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
Trav9n-2A0A0G2JDP3 Pkdcc-204ENSMUST00000170794 2446 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
Trav9n-2A0A0G2JDP3 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC22.04■■□□□ 1.12
Trav9n-2A0A0G2JDP3 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC22.04■■□□□ 1.12
Trav9n-2A0A0G2JDP3 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
Trav9n-2A0A0G2JDP3 Gm23366-201ENSMUST00000175022 89 ntBASIC21.99■■□□□ 1.11
Trav9n-2A0A0G2JDP3 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC21.98■■□□□ 1.11
Trav9n-2A0A0G2JDP3 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC21.95■■□□□ 1.1
Trav9n-2A0A0G2JDP3 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
Trav9n-2A0A0G2JDP3 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
Trav9n-2A0A0G2JDP3 Zic2-201ENSMUST00000075888 2440 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
Trav9n-2A0A0G2JDP3 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
Trav9n-2A0A0G2JDP3 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC21.82■■□□□ 1.08
Trav9n-2A0A0G2JDP3 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Trav9n-2A0A0G2JDP3 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Trav9n-2A0A0G2JDP3 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC21.63■■□□□ 1.05
Trav9n-2A0A0G2JDP3 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC21.62■■□□□ 1.05
Trav9n-2A0A0G2JDP3 Wtip-201ENSMUST00000038537 1962 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
Trav9n-2A0A0G2JDP3 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Trav9n-2A0A0G2JDP3 AC153911.1-202ENSMUST00000218534 1034 ntBASIC21.45■■□□□ 1.02
Trav9n-2A0A0G2JDP3 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC21.44■■□□□ 1.02
Trav9n-2A0A0G2JDP3 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC21.36■■□□□ 1.01
Trav9n-2A0A0G2JDP3 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
Trav9n-2A0A0G2JDP3 Rab12-201ENSMUST00000070538 2057 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
Trav9n-2A0A0G2JDP3 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC21.23■□□□□ 0.99
Trav9n-2A0A0G2JDP3 Tmem259-201ENSMUST00000052885 2225 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Trav9n-2A0A0G2JDP3 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC21.08■□□□□ 0.97
Trav9n-2A0A0G2JDP3 Gm10524-201ENSMUST00000181931 1893 ntBASIC21.05■□□□□ 0.96
Trav9n-2A0A0G2JDP3 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
Trav9n-2A0A0G2JDP3 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Trav9n-2A0A0G2JDP3 Cdk9-201ENSMUST00000009699 1733 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Trav9n-2A0A0G2JDP3 Foxd3-201ENSMUST00000087285 2324 ntAPPRIS P1 BASIC20.93■□□□□ 0.94
Trav9n-2A0A0G2JDP3 Gm20732-201ENSMUST00000175699 686 ntTSL 3 BASIC20.88■□□□□ 0.93
Trav9n-2A0A0G2JDP3 Gm12100-201ENSMUST00000150255 1933 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
Trav9n-2A0A0G2JDP3 Sh3glb2-201ENSMUST00000028214 1810 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Trav9n-2A0A0G2JDP3 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Trav9n-2A0A0G2JDP3 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Trav9n-2A0A0G2JDP3 Rexo2-201ENSMUST00000034524 1077 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Trav9n-2A0A0G2JDP3 Pkig-201ENSMUST00000064703 1036 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Trav9n-2A0A0G2JDP3 Nkx3-2-201ENSMUST00000060820 1718 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Trav9n-2A0A0G2JDP3 Fgf2-204ENSMUST00000138563 1240 ntAPPRIS P2 TSL 5 BASIC20.64■□□□□ 0.89
Trav9n-2A0A0G2JDP3 CT025624.2-201ENSMUST00000223609 1909 ntBASIC20.64■□□□□ 0.89
Trav9n-2A0A0G2JDP3 Mta3-202ENSMUST00000112349 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
Trav9n-2A0A0G2JDP3 Drap1-201ENSMUST00000025853 992 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Trav9n-2A0A0G2JDP3 Gm25238-201ENSMUST00000174914 89 ntBASIC20.59■□□□□ 0.89
Trav9n-2A0A0G2JDP3 Ube2ql1-201ENSMUST00000065118 2674 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Trav9n-2A0A0G2JDP3 Rab12-205ENSMUST00000167962 2010 ntAPPRIS P2 TSL 1 (best) BASIC20.55■□□□□ 0.88
Trav9n-2A0A0G2JDP3 Atoh7-201ENSMUST00000044059 1629 ntAPPRIS P1 BASIC20.55■□□□□ 0.88
Trav9n-2A0A0G2JDP3 Trabd-203ENSMUST00000165690 1941 ntAPPRIS P2 TSL 1 (best) BASIC20.55■□□□□ 0.88
Trav9n-2A0A0G2JDP3 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC20.54■□□□□ 0.88
Trav9n-2A0A0G2JDP3 Drap1-203ENSMUST00000113674 939 ntTSL 2 BASIC20.54■□□□□ 0.88
Trav9n-2A0A0G2JDP3 Gm42596-201ENSMUST00000196305 1958 ntBASIC20.53■□□□□ 0.88
Trav9n-2A0A0G2JDP3 Gm26699-201ENSMUST00000180825 2291 ntTSL 5 BASIC20.53■□□□□ 0.88
Trav9n-2A0A0G2JDP3 Sh3glb2-214ENSMUST00000163668 1733 ntTSL 5 BASIC20.51■□□□□ 0.87
Trav9n-2A0A0G2JDP3 Gm27325-201ENSMUST00000175467 74 ntBASIC20.5■□□□□ 0.87
Trav9n-2A0A0G2JDP3 Fgf18-201ENSMUST00000020507 1086 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Trav9n-2A0A0G2JDP3 Glt8d1-201ENSMUST00000022476 2018 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Trav9n-2A0A0G2JDP3 Sept3-202ENSMUST00000116423 2467 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Trav9n-2A0A0G2JDP3 Rnf149-204ENSMUST00000195705 389 ntTSL 3 BASIC20.36■□□□□ 0.85
Trav9n-2A0A0G2JDP3 Nrgn-201ENSMUST00000065668 1453 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Trav9n-2A0A0G2JDP3 Ccm2l-201ENSMUST00000109800 2158 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
Trav9n-2A0A0G2JDP3 Cacng8-201ENSMUST00000092351 1380 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Trav9n-2A0A0G2JDP3 Fbxo6-203ENSMUST00000105706 1938 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Trav9n-2A0A0G2JDP3 Vsig8-201ENSMUST00000061835 1801 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Trav9n-2A0A0G2JDP3 Syce2-204ENSMUST00000170296 929 ntAPPRIS ALT2 TSL 2 BASIC20.19■□□□□ 0.82
Trav9n-2A0A0G2JDP3 Epcam-201ENSMUST00000053577 2040 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
Trav9n-2A0A0G2JDP3 Ldb1-208ENSMUST00000185355 2088 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Trav9n-2A0A0G2JDP3 G6pc3-202ENSMUST00000078975 1573 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Trav9n-2A0A0G2JDP3 Atp1b3-201ENSMUST00000034983 1994 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Trav9n-2A0A0G2JDP3 Stard10-201ENSMUST00000032927 1400 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Trav9n-2A0A0G2JDP3 Vps37d-201ENSMUST00000067935 1544 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Trav9n-2A0A0G2JDP3 Tcfl5-201ENSMUST00000037877 2225 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
Trav9n-2A0A0G2JDP3 Tprgl-202ENSMUST00000105639 642 ntTSL 5 BASIC20.07■□□□□ 0.8
Trav9n-2A0A0G2JDP3 Asmt-201ENSMUST00000178693 1191 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Trav9n-2A0A0G2JDP3 Abhd17a-204ENSMUST00000191440 1529 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
Trav9n-2A0A0G2JDP3 Zxdb-201ENSMUST00000101388 5619 ntAPPRIS P1 BASIC20.06■□□□□ 0.8
Trav9n-2A0A0G2JDP3 Tmed7-201ENSMUST00000036030 1436 ntTSL 5 BASIC20.05■□□□□ 0.8
Trav9n-2A0A0G2JDP3 Msantd2-201ENSMUST00000048604 2291 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Trav9n-2A0A0G2JDP3 Jdp2-203ENSMUST00000177587 1645 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
Trav9n-2A0A0G2JDP3 Chmp4b-201ENSMUST00000044277 1616 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Trav9n-2A0A0G2JDP3 Crk-204ENSMUST00000108426 671 ntTSL 3 BASIC19.99■□□□□ 0.79
Trav9n-2A0A0G2JDP3 Crk-202ENSMUST00000093115 965 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
Trav9n-2A0A0G2JDP3 Samd1-201ENSMUST00000095228 2071 ntAPPRIS P1 TSL 5 BASIC19.99■□□□□ 0.79
Retrieved 100 of 76,532 protein–RNA pairs in 17.3 ms