RNA–Protein interactions for RNA: YAR002W

NUP60, Transcript of FG-nucleoporin component of central core of the nuclear pore complex, yeast

Gene NUP60, Length 1,620 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
NUP60	YAR002W	YAR028W	P39548	234 aa		3.75	□□□□□ -1.81
NUP60	YAR002W	YGR153W	P48238	217 aa		3.75	□□□□□ -1.81
NUP60	YAR002W	YGR045C	P53229	120 aa		3.75	□□□□□ -1.81
NUP60	YAR002W	YGR053C	P53234	283 aa		3.75	□□□□□ -1.81
NUP60	YAR002W	HXT15	P54854	567 aa		3.75	□□□□□ -1.81
NUP60	YAR002W	ROD1	Q02805	837 aa		3.75	□□□□□ -1.81
NUP60	YAR002W	SMD2	Q06217	110 aa	Known RBP	3.75	□□□□□ -1.81
NUP60	YAR002W	YDL124W	Q07551	312 aa	Known RBP	3.75	□□□□□ -1.81
NUP60	YAR002W	SLK19	Q08581	821 aa	Known RBP	3.75	□□□□□ -1.81
NUP60	YAR002W	YDR215C	Q12240	137 aa		3.75	□□□□□ -1.81
NUP60	YAR002W	TUS1	Q06412	1307 aa		3.74	□□□□□ -1.81
NUP60	YAR002W	TUF1	P02992	437 aa	Known RBP	3.74	□□□□□ -1.81
NUP60	YAR002W	TOP1	P04786	769 aa		3.74	□□□□□ -1.81
NUP60	YAR002W	RPS9B	P05755	195 aa	Known RBP	3.74	□□□□□ -1.81
NUP60	YAR002W	ADP1	P25371	1049 aa		3.74	□□□□□ -1.81
NUP60	YAR002W	TAT1	P38085	619 aa		3.74	□□□□□ -1.81
NUP60	YAR002W	CST26	P38226	397 aa		3.74	□□□□□ -1.81
NUP60	YAR002W	BCD1	P38772	366 aa		3.74	□□□□□ -1.81
NUP60	YAR002W	VPS45	P38932	577 aa		3.74	□□□□□ -1.81
NUP60	YAR002W	THI6	P41835	540 aa		3.74	□□□□□ -1.81
NUP60	YAR002W	OSW7	P43611	510 aa		3.74	□□□□□ -1.81
NUP60	YAR002W	SPO74	P45819	413 aa		3.74	□□□□□ -1.81
NUP60	YAR002W	JSN1	P47135	1091 aa	Known RBP RIP-Chip data	3.74	□□□□□ -1.81	not detected
NUP60	YAR002W	FAA4	P47912	694 aa	Known RBP	3.74	□□□□□ -1.81
NUP60	YAR002W	YGR237C	P50089	785 aa		3.74	□□□□□ -1.81
NUP60	YAR002W	UBA2	P52488	636 aa		3.74	□□□□□ -1.81
NUP60	YAR002W	MTC3	P53077	123 aa		3.74	□□□□□ -1.81
NUP60	YAR002W	ARI1	P53111	347 aa	Known RBP	3.74	□□□□□ -1.81
NUP60	YAR002W	SDA1	P53313	767 aa	Known RBP	3.74	□□□□□ -1.81
NUP60	YAR002W	YNR063W	P53749	607 aa		3.74	□□□□□ -1.81
NUP60	YAR002W	BNI5	P53890	448 aa	Known RBP	3.74	□□□□□ -1.81
NUP60	YAR002W	CRF1	Q04930	467 aa		3.74	□□□□□ -1.81
NUP60	YAR002W	YCG1	Q06680	1035 aa		3.74	□□□□□ -1.81
NUP60	YAR002W	VIP1	Q06685	1146 aa	Known RBP	3.74	□□□□□ -1.81
NUP60	YAR002W	APL4	Q12028	832 aa		3.74	□□□□□ -1.81
NUP60	YAR002W	FOB1	O13329	566 aa		3.73	□□□□□ -1.81
NUP60	YAR002W	CDC37	P06101	506 aa	Known RBP	3.73	□□□□□ -1.81
NUP60	YAR002W	DED1	P06634	604 aa	Known RBP	3.73	□□□□□ -1.81
NUP60	YAR002W	RPL8A	P17076	256 aa	Known RBP	3.73	□□□□□ -1.81
NUP60	YAR002W	SAM2	P19358	384 aa	Known RBP	3.73	□□□□□ -1.81
NUP60	YAR002W	YCK2	P23292	546 aa	Known RBP	3.73	□□□□□ -1.81
NUP60	YAR002W	MRC1	P25588	1096 aa		3.73	□□□□□ -1.81
NUP60	YAR002W	MKK2	P32491	506 aa		3.73	□□□□□ -1.81
NUP60	YAR002W	YET1	P35723	206 aa		3.73	□□□□□ -1.81
NUP60	YAR002W	NNK1	P36003	928 aa		3.73	□□□□□ -1.81
NUP60	YAR002W	GPT2	P36148	743 aa		3.73	□□□□□ -1.81
NUP60	YAR002W	PXL1	P36166	706 aa		3.73	□□□□□ -1.81
NUP60	YAR002W	STV1	P37296	890 aa		3.73	□□□□□ -1.81
NUP60	YAR002W	ERG7	P38604	731 aa		3.73	□□□□□ -1.81
NUP60	YAR002W	RTT107	P38850	1070 aa		3.73	□□□□□ -1.81
NUP60	YAR002W	CEP3	P40969	608 aa		3.73	□□□□□ -1.81
NUP60	YAR002W	VTC2	P43585	828 aa		3.73	□□□□□ -1.81
NUP60	YAR002W	CIT3	P43635	486 aa		3.73	□□□□□ -1.81
NUP60	YAR002W	AIP1	P46680	615 aa	Known RBP	3.73	□□□□□ -1.81
NUP60	YAR002W	ASE1	P50275	885 aa		3.73	□□□□□ -1.81
NUP60	YAR002W	ELA1	P53861	379 aa	Predicted RBP	3.73	□□□□□ -1.81
NUP60	YAR002W	EBS1	Q03466	884 aa	Known RBP	3.73	□□□□□ -1.81
NUP60	YAR002W	CSM3	Q04659	317 aa		3.73	□□□□□ -1.81
NUP60	YAR002W	SPP382	Q06411	708 aa	Predicted RBP	3.73	□□□□□ -1.81
NUP60	YAR002W	PMA1	P05030	918 aa	Known RBP	3.73	□□□□□ -1.81
NUP60	YAR002W	CKA2	P19454	339 aa		3.73	□□□□□ -1.81
NUP60	YAR002W	MSM1	P22438	575 aa		3.73	□□□□□ -1.81
NUP60	YAR002W	SPO11	P23179	398 aa		3.73	□□□□□ -1.81
NUP60	YAR002W	SYP1	P25623	870 aa	Known RBP	3.73	□□□□□ -1.81
NUP60	YAR002W	SEC65	P29478	273 aa		3.73	□□□□□ -1.81
NUP60	YAR002W	PSO2	P30620	661 aa		3.73	□□□□□ -1.81
NUP60	YAR002W	LYP1	P32487	611 aa		3.73	□□□□□ -1.81
NUP60	YAR002W	PET10	P36139	283 aa		3.73	□□□□□ -1.81
NUP60	YAR002W	PCH2	P38126	564 aa		3.73	□□□□□ -1.81
NUP60	YAR002W	YBL028C	P38202	106 aa		3.73	□□□□□ -1.81
NUP60	YAR002W	CTM1	P38818	585 aa		3.73	□□□□□ -1.81
NUP60	YAR002W	SKN7	P38889	622 aa		3.73	□□□□□ -1.81
NUP60	YAR002W	SPT8	P38915	602 aa		3.73	□□□□□ -1.81
NUP60	YAR002W	FYV8	P46949	817 aa	Known RBP	3.73	□□□□□ -1.81
NUP60	YAR002W	VPS53	P47061	822 aa		3.73	□□□□□ -1.81
NUP60	YAR002W	NNF1	P47149	201 aa		3.73	□□□□□ -1.81
NUP60	YAR002W	LSB1	P53281	241 aa		3.73	□□□□□ -1.81
NUP60	YAR002W	EEB1	Q02891	456 aa		3.73	□□□□□ -1.81
NUP60	YAR002W	SPO20	Q04359	397 aa		3.73	□□□□□ -1.81
NUP60	YAR002W	ADY4	Q05955	493 aa		3.73	□□□□□ -1.81
NUP60	YAR002W	COG4	Q06096	861 aa		3.73	□□□□□ -1.81
NUP60	YAR002W	TLG2	Q08144	397 aa		3.73	□□□□□ -1.81
NUP60	YAR002W	SFI1	Q12369	946 aa		3.73	□□□□□ -1.81
NUP60	YAR002W	MYO1	P08964	1928 aa		3.73	□□□□□ -1.81
NUP60	YAR002W	PET111	P08468	800 aa		3.72	□□□□□ -1.81
NUP60	YAR002W	ISY1	P21374	235 aa	Predicted RBP	3.72	□□□□□ -1.81
NUP60	YAR002W	RAD53	P22216	821 aa		3.72	□□□□□ -1.81
NUP60	YAR002W	GSY1	P23337	708 aa		3.72	□□□□□ -1.81
NUP60	YAR002W	RRP43	P25359	394 aa	Predicted RBP	3.72	□□□□□ -1.81
NUP60	YAR002W	SRO9	P25567	434 aa	Known RBP	3.72	□□□□□ -1.81
NUP60	YAR002W	SMY2	P32909	740 aa	Known RBP	3.72	□□□□□ -1.81
NUP60	YAR002W	MIP6	P38760	659 aa	Known RBP	3.72	□□□□□ -1.81
NUP60	YAR002W	VPS4	P52917	437 aa		3.72	□□□□□ -1.81
NUP60	YAR002W	TYW3	P53177	273 aa		3.72	□□□□□ -1.81
NUP60	YAR002W	CBK1	P53894	756 aa		3.72	□□□□□ -1.81
NUP60	YAR002W	ALF1	P53904	254 aa		3.72	□□□□□ -1.81
NUP60	YAR002W	TRM44	Q02648	567 aa	Known RBP	3.72	□□□□□ -1.81
NUP60	YAR002W	VPS60	Q03390	229 aa		3.72	□□□□□ -1.81
NUP60	YAR002W	AIM33	Q04516	312 aa		3.72	□□□□□ -1.81
NUP60	YAR002W	VPS38	Q05919	439 aa		3.72	□□□□□ -1.81

Retrieved 100 of 5,963 RNA–protein pairs in 17.5 ms