RNA–Protein interactions for RNA: YAR002W

NUP60, Transcript of FG-nucleoporin component of central core of the nuclear pore complex, yeastyeast

Gene NUP60, Length 1,620 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
NUP60YAR002W FAP1P53971 965 aa8.75□□□□□ -1.01
NUP60YAR002W MTC1P47018 478 aaKnown RBP8.46□□□□□ -1.06
NUP60YAR002W DRS1P32892 752 aaKnown RBP8.42□□□□□ -1.06
NUP60YAR002W PRY3P47033 881 aa8.24□□□□□ -1.09
NUP60YAR002W AAD16Q02895 342 aa7.75□□□□□ -1.17
NUP60YAR002W HAA1Q12753 694 aaKnown RBP7.67□□□□□ -1.18
NUP60YAR002W PRI1P10363 409 aa7.66□□□□□ -1.18
NUP60YAR002W YCK3P39962 524 aa7.63□□□□□ -1.19
NUP60YAR002W BFR2Q06631 534 aaKnown RBP7.3□□□□□ -1.24
NUP60YAR002W ISW2Q08773 1120 aa7.27□□□□□ -1.25
NUP60YAR002W TSR3Q12094 313 aaKnown RBP7.21□□□□□ -1.26
NUP60YAR002W RPG1P38249 964 aaKnown RBP7.2□□□□□ -1.26
NUP60YAR002W DIP2Q12220 943 aaPredicted RBP7.17□□□□□ -1.26
NUP60YAR002W AVT3P36062 692 aa7.07□□□□□ -1.28
NUP60YAR002W MRPL32P25348 183 aa6.96□□□□□ -1.3
NUP60YAR002W YGL015CP33199 130 aa6.93□□□□□ -1.3
NUP60YAR002W TFA1P36100 482 aa6.87□□□□□ -1.31
NUP60YAR002W RSE1Q04693 1361 aaKnown RBP6.78□□□□□ -1.32
NUP60YAR002W BUD31P25337 157 aaPredicted RBP6.73□□□□□ -1.33
NUP60YAR002W RPL17AP05740 184 aaKnown RBP6.51□□□□□ -1.37
NUP60YAR002W RPL17BP46990 184 aaKnown RBP6.51□□□□□ -1.37
NUP60YAR002W REB1P21538 810 aa6.47□□□□□ -1.37
NUP60YAR002W CDC27P38042 758 aa6.38□□□□□ -1.39
NUP60YAR002W SIS1P25294 352 aaKnown RBP6.37□□□□□ -1.39
NUP60YAR002W UBP10P53874 792 aaPredicted RBP6.35□□□□□ -1.39
NUP60YAR002W MAP2P38174 421 aaKnown RBP6.32□□□□□ -1.4
NUP60YAR002W SPT21P35209 758 aa6.25□□□□□ -1.41
NUP60YAR002W UBP9P39967 754 aa6.24□□□□□ -1.41
NUP60YAR002W RIM101P33400 625 aa6.18□□□□□ -1.42
NUP60YAR002W TIF4632P39936 914 aaKnown RBP6.14□□□□□ -1.43
NUP60YAR002W YKR023WP36119 530 aaKnown RBP6.13□□□□□ -1.43
NUP60YAR002W TGL3P40308 642 aa6.1□□□□□ -1.43
NUP60YAR002W HOP09932 586 aa6.04□□□□□ -1.44
NUP60YAR002W DCD1P06773 312 aa6.03□□□□□ -1.44
NUP60YAR002W SCY1P53009 804 aa6.03□□□□□ -1.44
NUP60YAR002W SLX5P32828 619 aaKnown RBP6.03□□□□□ -1.44
NUP60YAR002W TFC8Q12308 588 aa6.02□□□□□ -1.45
NUP60YAR002W SGS1P35187 1447 aa5.99□□□□□ -1.45
NUP60YAR002W OXP1P28273 1286 aa5.99□□□□□ -1.45
NUP60YAR002W PTP3P40048 928 aa5.96□□□□□ -1.45
NUP60YAR002W YIL055CP40523 627 aaKnown RBP5.94□□□□□ -1.46
NUP60YAR002W SSP1P38871 571 aa5.93□□□□□ -1.46
NUP60YAR002W YAH1Q12184 172 aaKnown RBP5.9□□□□□ -1.46
NUP60YAR002W RQC2Q12532 1038 aaKnown RBP5.88□□□□□ -1.47
NUP60YAR002W INO80P53115 1489 aa5.88□□□□□ -1.47
NUP60YAR002W ARP8Q12386 881 aaKnown RBP RIP-Chip data5.86□□□□□ -1.47not detected
NUP60YAR002W RSM7P47150 247 aa5.83□□□□□ -1.48
NUP60YAR002W YLR271WQ06152 274 aa5.82□□□□□ -1.48
NUP60YAR002W TCB3Q03640 1545 aaKnown RBP5.79□□□□□ -1.48
NUP60YAR002W BCH2P36122 765 aa5.79□□□□□ -1.48
NUP60YAR002W YBL029C-AQ3E756 94 aa5.78□□□□□ -1.48
NUP60YAR002W SPA2P23201 1466 aaKnown RBP5.76□□□□□ -1.49
NUP60YAR002W SSN2P38931 1420 aa5.74□□□□□ -1.49
NUP60YAR002W AI2P03876 854 aa5.73□□□□□ -1.49
NUP60YAR002W MGA2P40578 1113 aa5.72□□□□□ -1.49
NUP60YAR002W TY1B-DR4Q07793 1604 aa5.71□□□□□ -1.49
NUP60YAR002W BBC1P47068 1157 aa5.71□□□□□ -1.5
NUP60YAR002W MST1P07236 462 aa5.69□□□□□ -1.5
NUP60YAR002W MON2P48563 1636 aaPredicted RBP5.68□□□□□ -1.5
NUP60YAR002W EPS1P40557 701 aa5.67□□□□□ -1.5
NUP60YAR002W VNX1P42839 908 aa5.67□□□□□ -1.5
NUP60YAR002W YJL171CP46992 396 aa5.67□□□□□ -1.5
NUP60YAR002W PSD2P53037 1138 aaKnown RBP5.67□□□□□ -1.5
NUP60YAR002W YOR238WQ08634 303 aa5.67□□□□□ -1.5
NUP60YAR002W SPP1Q03012 353 aa5.65□□□□□ -1.51
NUP60YAR002W DMA1P38823 416 aa5.64□□□□□ -1.51
NUP60YAR002W CST9Q06032 482 aa5.63□□□□□ -1.51
NUP60YAR002W BDF1P35817 686 aa5.63□□□□□ -1.51
NUP60YAR002W HSL1P34244 1518 aa5.62□□□□□ -1.51
NUP60YAR002W SPT6P23615 1451 aaKnown RBP5.6□□□□□ -1.51
NUP60YAR002W AIR2Q12476 344 aaKnown RBP5.59□□□□□ -1.51
NUP60YAR002W WSC3Q12215 556 aa5.58□□□□□ -1.52
NUP60YAR002W SWR1Q05471 1514 aa5.58□□□□□ -1.52
NUP60YAR002W FKH1P40466 484 aa5.55□□□□□ -1.52
NUP60YAR002W MRM1P25270 412 aa5.54□□□□□ -1.52
NUP60YAR002W HIR3P47171 1648 aa5.52□□□□□ -1.53
NUP60YAR002W NSR1P27476 414 aaKnown RBP RIP-Chip data5.51□□□□□ -1.53not detected
NUP60YAR002W TIF11P38912 153 aaKnown RBP5.51□□□□□ -1.53
NUP60YAR002W YAP5P40574 245 aa5.5□□□□□ -1.53
NUP60YAR002W RTG3P38165 486 aa5.49□□□□□ -1.53
NUP60YAR002W XRN1P22147 1528 aaKnown RBP5.48□□□□□ -1.53
NUP60YAR002W BMT6Q12291 365 aa5.48□□□□□ -1.53
NUP60YAR002W GTT3P39996 337 aa5.45□□□□□ -1.54
NUP60YAR002W RAM2P29703 316 aa5.44□□□□□ -1.54
NUP60YAR002W RCR1P38212 213 aa5.44□□□□□ -1.54
NUP60YAR002W LDB19Q12502 818 aa5.44□□□□□ -1.54
NUP60YAR002W REV3P14284 1504 aa5.41□□□□□ -1.54
NUP60YAR002W VPS29P38759 282 aa5.41□□□□□ -1.54
NUP60YAR002W DNA2P38859 1522 aa5.4□□□□□ -1.55
NUP60YAR002W ULI1P43604 169 aa5.39□□□□□ -1.55
NUP60YAR002W MAK11P20484 414 aaKnown RBP5.38□□□□□ -1.55
NUP60YAR002W YMR1P47147 688 aaKnown RBP RIP-Chip data5.38□□□□□ -1.55not detected
NUP60YAR002W KOG1P38873 1557 aa5.38□□□□□ -1.55
NUP60YAR002W SIN3P22579 1536 aa5.38□□□□□ -1.55
NUP60YAR002W THO2P53552 1597 aaKnown RBP5.36□□□□□ -1.55
NUP60YAR002W SAS10Q12136 610 aaPredicted RBP5.36□□□□□ -1.55
NUP60YAR002W IOC2Q12072 812 aa5.35□□□□□ -1.55
NUP60YAR002W SSK2P53599 1579 aa5.35□□□□□ -1.55
NUP60YAR002W SET1P38827 1080 aaKnown RBP5.34□□□□□ -1.55
NUP60YAR002W DBP1P24784 617 aaKnown RBP5.34□□□□□ -1.56
Retrieved 100 of 5,963 RNA–protein pairs in 23.5 ms