RNA–Protein interactions for RNA: YDR027C

VPS54, Transcript of Component of the GARP (Golgi-associated retrograde protein) complex, yeastyeast

Gene VPS54, Length 2,670 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
VPS54YDR027C SLU7Q02775 382 aaKnown RBP2.51□□□□□ -2.01
VPS54YDR027C SSL1Q04673 461 aaPredicted RBP2.51□□□□□ -2.01
VPS54YDR027C YRO2P38079 344 aa2.5□□□□□ -2.01
VPS54YDR027C YBR238CP38330 731 aaKnown RBP2.5□□□□□ -2.01
VPS54YDR027C DAS1P47005 663 aa2.5□□□□□ -2.01
VPS54YDR027C SHE9Q04172 456 aa2.5□□□□□ -2.01
VPS54YDR027C SWM1Q12379 170 aa2.5□□□□□ -2.01
VPS54YDR027C RFA1P22336 621 aaKnown RBP2.5□□□□□ -2.01
VPS54YDR027C SDP1P40479 209 aa2.5□□□□□ -2.01
VPS54YDR027C YIL108WP40483 696 aaKnown RBP2.5□□□□□ -2.01
VPS54YDR027C YKE2P52553 114 aa2.5□□□□□ -2.01
VPS54YDR027C ERG5P54781 538 aa2.5□□□□□ -2.01
VPS54YDR027C VPS16Q03308 798 aa2.5□□□□□ -2.01
VPS54YDR027C DLT1Q04216 342 aa2.5□□□□□ -2.01
VPS54YDR027C FRE5Q08908 694 aa2.5□□□□□ -2.01
VPS54YDR027C NPP1P25353 742 aa2.49□□□□□ -2.01
VPS54YDR027C TRM11Q12463 433 aa2.49□□□□□ -2.01
VPS54YDR027C CTF13P35203 478 aa2.49□□□□□ -2.01
VPS54YDR027C OPI10Q08202 246 aa2.49□□□□□ -2.01
VPS54YDR027C RPD3P32561 433 aa2.48□□□□□ -2.01
VPS54YDR027C TYE7P33122 291 aaPredicted RBP2.48□□□□□ -2.01
VPS54YDR027C MRP8P35719 219 aa2.48□□□□□ -2.01
VPS54YDR027C PPS1P38148 807 aa2.48□□□□□ -2.01
VPS54YDR027C YHL017WP38745 532 aa2.48□□□□□ -2.01
VPS54YDR027C ELO3P40319 345 aa2.48□□□□□ -2.01
VPS54YDR027C SDS3P40505 327 aa2.48□□□□□ -2.01
VPS54YDR027C CCM1P48237 864 aaPredicted RBP2.48□□□□□ -2.01
VPS54YDR027C FBP1P09201 348 aa2.48□□□□□ -2.01
VPS54YDR027C CAF20P12962 161 aaKnown RBP2.48□□□□□ -2.01
VPS54YDR027C PRI2P20457 528 aa2.48□□□□□ -2.01
VPS54YDR027C CTF8P38877 133 aa2.48□□□□□ -2.01
VPS54YDR027C PBY1P38254 753 aa2.47□□□□□ -2.01
VPS54YDR027C CEP3P40969 608 aa2.47□□□□□ -2.01
VPS54YDR027C SNM1P40993 198 aa2.47□□□□□ -2.01
VPS54YDR027C PIN2Q12057 282 aa2.47□□□□□ -2.01
VPS54YDR027C DNF1P32660 1571 aa2.47□□□□□ -2.01
VPS54YDR027C RPS9AO13516 197 aaKnown RBP2.47□□□□□ -2.01
VPS54YDR027C SCT1P32784 759 aa2.47□□□□□ -2.01
VPS54YDR027C SIT1P39980 628 aa2.47□□□□□ -2.01
VPS54YDR027C FKH2P41813 862 aa2.47□□□□□ -2.01
VPS54YDR027C YKR011CQ02209 353 aa2.47□□□□□ -2.01
VPS54YDR027C CRR1Q05790 422 aa2.47□□□□□ -2.01
VPS54YDR027C ADY4Q05955 493 aa2.47□□□□□ -2.01
VPS54YDR027C MDS3P53094 1487 aa2.47□□□□□ -2.01
VPS54YDR027C BNI1P41832 1953 aa2.46□□□□□ -2.01
VPS54YDR027C AFR1P33304 620 aa2.46□□□□□ -2.01
VPS54YDR027C YKL069WP36088 180 aa2.46□□□□□ -2.01
VPS54YDR027C YHR078WP38799 552 aa2.46□□□□□ -2.01
VPS54YDR027C PUS2P53167 370 aa2.46□□□□□ -2.01
VPS54YDR027C MRH1Q12117 320 aaPredicted RBP2.46□□□□□ -2.01
VPS54YDR027C NDJ1Q12366 352 aa2.46□□□□□ -2.01
VPS54YDR027C THO2P53552 1597 aaKnown RBP2.46□□□□□ -2.02
VPS54YDR027C TUB3P09734 445 aaKnown RBP2.46□□□□□ -2.02
VPS54YDR027C GFA1P14742 717 aaKnown RBP2.46□□□□□ -2.02
VPS54YDR027C LCD1Q04377 747 aa2.46□□□□□ -2.02
VPS54YDR027C JIP5Q06214 492 aaPredicted RBP2.46□□□□□ -2.02
VPS54YDR027C MYO2P19524 1574 aaKnown RBP2.46□□□□□ -2.02
VPS54YDR027C IRC20Q06554 1556 aa2.46□□□□□ -2.02
VPS54YDR027C PRP9P19736 530 aaKnown RBP2.45□□□□□ -2.02
VPS54YDR027C RPP1P38786 293 aa2.45□□□□□ -2.02
VPS54YDR027C MUP1P50276 574 aa2.45□□□□□ -2.02
VPS54YDR027C LTE1P07866 1435 aa2.45□□□□□ -2.02
VPS54YDR027C BUD4P47136 1447 aa2.45□□□□□ -2.02
VPS54YDR027C BPT1P14772 1559 aa2.45□□□□□ -2.02
VPS54YDR027C CDC43P18898 376 aa2.45□□□□□ -2.02
VPS54YDR027C URA1P28272 314 aaPredicted RBP2.45□□□□□ -2.02
VPS54YDR027C PEX2P32800 271 aa2.45□□□□□ -2.02
VPS54YDR027C REC104P33323 182 aa2.45□□□□□ -2.02
VPS54YDR027C IRR1P40541 1150 aa2.45□□□□□ -2.02
VPS54YDR027C JSN1P47135 1091 aaKnown RBP RIP-Chip data2.45□□□□□ -2.02not detected
VPS54YDR027C HDA1P53973 706 aa2.45□□□□□ -2.02
VPS54YDR027C MSL5Q12186 476 aaKnown RBP RIP-Chip data2.45□□□□□ -2.02not detected
VPS54YDR027C PEP1P32319 1579 aa2.45□□□□□ -2.02
VPS54YDR027C PPZ2P33329 710 aa2.45□□□□□ -2.02
VPS54YDR027C TOK1P40310 691 aa2.45□□□□□ -2.02
VPS54YDR027C SVF1Q05515 481 aa2.45□□□□□ -2.02
VPS54YDR027C HCA4P20448 770 aaKnown RBP2.44□□□□□ -2.02
VPS54YDR027C NGG1P32494 702 aa2.44□□□□□ -2.02
VPS54YDR027C ERT1P38140 529 aa2.44□□□□□ -2.02
VPS54YDR027C VHR1P40522 640 aa2.44□□□□□ -2.02
VPS54YDR027C PKH1Q03407 766 aa2.44□□□□□ -2.02
VPS54YDR027C CDC11P32458 415 aa2.44□□□□□ -2.02
VPS54YDR027C TDP1P38319 544 aa2.44□□□□□ -2.02
VPS54YDR027C PCL5P38794 229 aa2.44□□□□□ -2.02
VPS54YDR027C AMA1P50082 593 aa2.44□□□□□ -2.02
VPS54YDR027C MPH2P0CD99 609 aa2.43□□□□□ -2.02
VPS54YDR027C RIA1P53893 1110 aa2.43□□□□□ -2.02
VPS54YDR027C ASI2P53895 289 aa2.43□□□□□ -2.02
VPS54YDR027C PZF1P39933 429 aa2.43□□□□□ -2.02
VPS54YDR027C YJL163CP46996 555 aa2.43□□□□□ -2.02
VPS54YDR027C BUL2Q03758 920 aaKnown RBP2.43□□□□□ -2.02
VPS54YDR027C TDA5Q06417 326 aaKnown RBP2.43□□□□□ -2.02
VPS54YDR027C PRP4P20053 465 aaKnown RBP2.42□□□□□ -2.02
VPS54YDR027C KIN3P22209 435 aa2.42□□□□□ -2.02
VPS54YDR027C MRPS35P53292 345 aa2.42□□□□□ -2.02
VPS54YDR027C NRG1Q03125 231 aa2.42□□□□□ -2.02
VPS54YDR027C YPR071WQ12346 211 aa2.42□□□□□ -2.02
VPS54YDR027C TUB1P09733 447 aaKnown RBP2.42□□□□□ -2.02
VPS54YDR027C HBS1P32769 611 aaKnown RBP2.42□□□□□ -2.02
VPS54YDR027C YBR053CP38235 358 aa2.42□□□□□ -2.02
Retrieved 100 of 5,963 RNA–protein pairs in 10 ms