Protein–RNA interactions for Protein: P38319

TDP1, Tyrosyl-DNA phosphodiesterase 1, yeastyeast

Predictions only

Length 544 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
TDP1P38319 NSR1YGR159C 1245 nt19.45■□□□□ 0.7
TDP1P38319 YML009W-BYML009W-B 477 nt19.15■□□□□ 0.66
TDP1P38319 NOP1YDL014W 984 nt18.44■□□□□ 0.54
TDP1P38319 MDJ1YFL016C 1536 nt17.67■□□□□ 0.42
TDP1P38319 YKL036CYKL036C 393 nt16.63■□□□□ 0.25
TDP1P38319 YJL027CYJL027C 417 nt16.23■□□□□ 0.19
TDP1P38319 SRX1YKL086W 384 nt16.15■□□□□ 0.18
TDP1P38319 Q0297Q0297 156 nt16.05■□□□□ 0.16
TDP1P38319 DBP2YNL112W 1641 nt15.52■□□□□ 0.08
TDP1P38319 YCR051WYCR051W 669 nt15.24■□□□□ 0.03
TDP1P38319 YBR190WYBR190W 312 nt15.18■□□□□ 0.02
TDP1P38319 SCS3YGL126W 1143 nt15.01□□□□□ -0.01
TDP1P38319 TRN1tP(UGG)A 72 nt14.87□□□□□ -0.03
TDP1P38319 SUF9tP(UGG)F 72 nt14.87□□□□□ -0.03
TDP1P38319 SUF8tP(UGG)H 72 nt14.87□□□□□ -0.03
TDP1P38319 tP(UGG)LtP(UGG)L 72 nt14.87□□□□□ -0.03
TDP1P38319 SUF7tP(UGG)M 72 nt14.87□□□□□ -0.03
TDP1P38319 tP(UGG)N1tP(UGG)N1 72 nt14.87□□□□□ -0.03
TDP1P38319 tP(UGG)N2tP(UGG)N2 72 nt14.87□□□□□ -0.03
TDP1P38319 tP(UGG)O1tP(UGG)O1 72 nt14.87□□□□□ -0.03
TDP1P38319 SUF11tP(UGG)O2 72 nt14.87□□□□□ -0.03
TDP1P38319 RTC3YHR087W 336 nt14.76□□□□□ -0.05
TDP1P38319 CCC1YLR220W 969 nt14.66□□□□□ -0.06
TDP1P38319 YOL085CYOL085C 342 nt14.45□□□□□ -0.1
TDP1P38319 RPP1BYDL130W 321 nt14.39□□□□□ -0.11
TDP1P38319 RVS167YDR388W 1449 nt14.39□□□□□ -0.11
TDP1P38319 SCJ1YMR214W 1134 nt14.31□□□□□ -0.12
TDP1P38319 SSA3YBL075C 1950 nt14.27□□□□□ -0.13
TDP1P38319 PKP1YIL042C 1185 nt14.25□□□□□ -0.13
TDP1P38319 PUT4YOR348C 1884 nt14.16□□□□□ -0.14
TDP1P38319 tP(UGG)O3tP(UGG)O3 72 nt13.91□□□□□ -0.18
TDP1P38319 SHR5YOL110W 714 nt13.83□□□□□ -0.2
TDP1P38319 PET122YER153C 765 nt13.81□□□□□ -0.2
TDP1P38319 ARE1YCR048W 1833 nt13.76□□□□□ -0.21
TDP1P38319 URN1YPR152C 1398 nt13.7□□□□□ -0.22
TDP1P38319 POA1YBR022W 534 nt13.63□□□□□ -0.23
TDP1P38319 SAH1YER043C 1350 nt13.62□□□□□ -0.23
TDP1P38319 OPI9YLR338W 858 nt13.61□□□□□ -0.23
TDP1P38319 DEP1YAL013W 1218 nt13.55□□□□□ -0.24
TDP1P38319 YHR049C-AYHR049C-A 297 nt13.54□□□□□ -0.24
TDP1P38319 SCR1SCR1 522 nt13.49□□□□□ -0.25
TDP1P38319 YDJ1YNL064C 1230 nt13.48□□□□□ -0.25
TDP1P38319 ATS1YAL020C 1002 nt13.46□□□□□ -0.25
TDP1P38319 BSC6YOL137W 1494 nt13.43□□□□□ -0.26
TDP1P38319 RPN10YHR200W 807 nt13.36□□□□□ -0.27
TDP1P38319 RRN5YLR141W 1092 nt13.36□□□□□ -0.27
TDP1P38319 YNL208WYNL208W 600 nt13.31□□□□□ -0.28
TDP1P38319 SPT5YML010W 3192 nt13.24□□□□□ -0.29
TDP1P38319 GAR1YHR089C 618 nt13.21□□□□□ -0.29
TDP1P38319 PUN1YLR414C 792 nt13.19□□□□□ -0.3
TDP1P38319 BUD23YCR047C 828 nt13.15□□□□□ -0.3
TDP1P38319 YER088W-BYER088W-B 147 nt13.11□□□□□ -0.31
TDP1P38319 PTC2YER089C 1395 nt13.1□□□□□ -0.31
TDP1P38319 YJR018WYJR018W 363 nt13.04□□□□□ -0.32
TDP1P38319 NAB2YGL122C 1578 nt12.99□□□□□ -0.33
TDP1P38319 RSB1YOR049C 1065 nt12.91□□□□□ -0.34
TDP1P38319 SSA4YER103W 1929 nt12.89□□□□□ -0.35
TDP1P38319 YJR120WYJR120W 351 nt12.83□□□□□ -0.36
TDP1P38319 FIS1YIL065C 468 nt12.81□□□□□ -0.36
TDP1P38319 TIR1YER011W 765 nt12.8□□□□□ -0.36
TDP1P38319 SSA1YAL005C 1929 nt12.77□□□□□ -0.37
TDP1P38319 DAL1YIR027C 1383 nt12.75□□□□□ -0.37
TDP1P38319 MEP2YNL142W 1500 nt12.67□□□□□ -0.38
TDP1P38319 FPR4YLR449W 1179 nt12.65□□□□□ -0.38
TDP1P38319 INM2YDR287W 879 nt12.63□□□□□ -0.39
TDP1P38319 PHO4YFR034C 939 nt12.63□□□□□ -0.39
TDP1P38319 RPP2BYDR382W 333 nt12.62□□□□□ -0.39
TDP1P38319 YPS1YLR120C 1710 nt12.56□□□□□ -0.4
TDP1P38319 SRB2YHR041C 633 nt12.51□□□□□ -0.41
TDP1P38319 Q0182Q0182 405 nt12.49□□□□□ -0.41
TDP1P38319 BDF1YLR399C 2061 nt12.49□□□□□ -0.41
TDP1P38319 DCW1YKL046C 1350 nt12.46□□□□□ -0.41
TDP1P38319 YBL100CYBL100C 315 nt12.44□□□□□ -0.42
TDP1P38319 PST2YDR032C 597 nt12.43□□□□□ -0.42
TDP1P38319 YDR095CYDR095C 411 nt12.41□□□□□ -0.42
TDP1P38319 YHR165W-AYHR165W-A 312 nt12.39□□□□□ -0.43
TDP1P38319 BDH2YAL061W 1254 nt12.35□□□□□ -0.43
TDP1P38319 TAT1YBR069C 1860 nt12.3□□□□□ -0.44
TDP1P38319 FUN26YAL022C 1554 nt12.29□□□□□ -0.44
TDP1P38319 EMI2YDR516C 1503 nt12.27□□□□□ -0.44
TDP1P38319 YBR220CYBR220C 1683 nt12.22□□□□□ -0.45
TDP1P38319 PTP1YDL230W 1008 nt12.21□□□□□ -0.45
TDP1P38319 CAC2YML102W 1407 nt12.18□□□□□ -0.46
TDP1P38319 WWM1YFL010C 636 nt12.17□□□□□ -0.46
TDP1P38319 YMR090WYMR090W 684 nt12.17□□□□□ -0.46
TDP1P38319 YDL221WYDL221W 552 nt12.16□□□□□ -0.46
TDP1P38319 TRM9YML014W 840 nt12.16□□□□□ -0.46
TDP1P38319 RPP2AYOL039W 321 nt12.16□□□□□ -0.46
TDP1P38319 ALF1YNL148C 765 nt12.15□□□□□ -0.46
TDP1P38319 LSM3YLR438C-A 270 nt12.11□□□□□ -0.47
TDP1P38319 CCT6YDR188W 1641 nt12.11□□□□□ -0.47
TDP1P38319 SDH1YKL148C 1923 nt12.09□□□□□ -0.47
TDP1P38319 PAC11YDR488C 1602 nt12.07□□□□□ -0.48
TDP1P38319 SIS1YNL007C 1059 nt12.05□□□□□ -0.48
TDP1P38319 YKL097CYKL097C 411 nt12.04□□□□□ -0.48
TDP1P38319 IRC15YPL017C 1500 nt12.01□□□□□ -0.49
TDP1P38319 NVJ2YPR091C 2313 nt11.99□□□□□ -0.49
TDP1P38319 YFL021C-AYFL021C-A 855 nt11.98□□□□□ -0.49
TDP1P38319 SUF2tP(AGG)C 72 nt11.98□□□□□ -0.49
TDP1P38319 SUF10tP(AGG)N 72 nt11.98□□□□□ -0.49
Retrieved 100 of 7,029 protein–RNA pairs in 10.6 ms