RNA–Protein interactions for RNA: YDR027C

VPS54, Transcript of Component of the GARP (Golgi-associated retrograde protein) complex, yeastyeast

Gene VPS54, Length 2,670 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
VPS54YDR027C MTC1P47018 478 aaKnown RBP8.2□□□□□ -1.1
VPS54YDR027C DRS1P32892 752 aaKnown RBP7.57□□□□□ -1.2
VPS54YDR027C FAP1P53971 965 aa7.55□□□□□ -1.2
VPS54YDR027C PRY3P47033 881 aa7.09□□□□□ -1.27
VPS54YDR027C PRI1P10363 409 aa6.97□□□□□ -1.29
VPS54YDR027C AAD16Q02895 342 aa6.97□□□□□ -1.29
VPS54YDR027C ISW2Q08773 1120 aa6.85□□□□□ -1.31
VPS54YDR027C RPG1P38249 964 aaKnown RBP6.77□□□□□ -1.33
VPS54YDR027C DIP2Q12220 943 aaPredicted RBP6.67□□□□□ -1.34
VPS54YDR027C HAA1Q12753 694 aaKnown RBP6.65□□□□□ -1.35
VPS54YDR027C YCK3P39962 524 aa6.6□□□□□ -1.35
VPS54YDR027C TSR3Q12094 313 aaKnown RBP6.6□□□□□ -1.35
VPS54YDR027C RSE1Q04693 1361 aaKnown RBP6.5□□□□□ -1.37
VPS54YDR027C MRPL32P25348 183 aa6.37□□□□□ -1.39
VPS54YDR027C AVT3P36062 692 aa6.37□□□□□ -1.39
VPS54YDR027C RPL17AP05740 184 aaKnown RBP6.29□□□□□ -1.4
VPS54YDR027C REB1P21538 810 aa6.29□□□□□ -1.4
VPS54YDR027C RPL17BP46990 184 aaKnown RBP6.29□□□□□ -1.4
VPS54YDR027C BFR2Q06631 534 aaKnown RBP6.25□□□□□ -1.41
VPS54YDR027C YGL015CP33199 130 aa6.13□□□□□ -1.43
VPS54YDR027C CDC27P38042 758 aa5.98□□□□□ -1.45
VPS54YDR027C SPT21P35209 758 aa5.97□□□□□ -1.45
VPS54YDR027C YKR023WP36119 530 aaKnown RBP5.93□□□□□ -1.46
VPS54YDR027C UBP10P53874 792 aaPredicted RBP5.85□□□□□ -1.47
VPS54YDR027C HOP09932 586 aa5.83□□□□□ -1.48
VPS54YDR027C TFC8Q12308 588 aa5.82□□□□□ -1.48
VPS54YDR027C MAP2P38174 421 aaKnown RBP5.82□□□□□ -1.48
VPS54YDR027C DCD1P06773 312 aa5.8□□□□□ -1.48
VPS54YDR027C RIM101P33400 625 aa5.75□□□□□ -1.49
VPS54YDR027C SCY1P53009 804 aa5.7□□□□□ -1.5
VPS54YDR027C SLX5P32828 619 aaKnown RBP5.64□□□□□ -1.51
VPS54YDR027C TIF4632P39936 914 aaKnown RBP5.64□□□□□ -1.51
VPS54YDR027C BUD31P25337 157 aaPredicted RBP5.64□□□□□ -1.51
VPS54YDR027C BCH2P36122 765 aa5.62□□□□□ -1.51
VPS54YDR027C TGL3P40308 642 aa5.59□□□□□ -1.51
VPS54YDR027C OXP1P28273 1286 aa5.54□□□□□ -1.52
VPS54YDR027C YIL055CP40523 627 aaKnown RBP5.52□□□□□ -1.53
VPS54YDR027C PTP3P40048 928 aa5.52□□□□□ -1.53
VPS54YDR027C UBP9P39967 754 aa5.49□□□□□ -1.53
VPS54YDR027C EPS1P40557 701 aa5.49□□□□□ -1.53
VPS54YDR027C BDF1P35817 686 aa5.46□□□□□ -1.54
VPS54YDR027C TFA1P36100 482 aa5.44□□□□□ -1.54
VPS54YDR027C RSM7P47150 247 aa5.41□□□□□ -1.54
VPS54YDR027C BBC1P47068 1157 aa5.41□□□□□ -1.54
VPS54YDR027C YAH1Q12184 172 aaKnown RBP5.41□□□□□ -1.54
VPS54YDR027C SIS1P25294 352 aaKnown RBP5.4□□□□□ -1.54
VPS54YDR027C AI2P03876 854 aa5.37□□□□□ -1.55
VPS54YDR027C YOR238WQ08634 303 aa5.34□□□□□ -1.55
VPS54YDR027C MST1P07236 462 aa5.31□□□□□ -1.56
VPS54YDR027C NSR1P27476 414 aaKnown RBP RIP-Chip data5.3□□□□□ -1.56not detected
VPS54YDR027C YAP5P40574 245 aa5.29□□□□□ -1.56
VPS54YDR027C YLR271WQ06152 274 aa5.28□□□□□ -1.56
VPS54YDR027C YBL029C-AQ3E756 94 aa5.27□□□□□ -1.57
VPS54YDR027C ARP8Q12386 881 aaKnown RBP RIP-Chip data5.22□□□□□ -1.57not detected
VPS54YDR027C PSD2P53037 1138 aaKnown RBP5.21□□□□□ -1.57
VPS54YDR027C SSP1P38871 571 aa5.2□□□□□ -1.58
VPS54YDR027C VNX1P42839 908 aa5.2□□□□□ -1.58
VPS54YDR027C GTT3P39996 337 aa5.2□□□□□ -1.58
VPS54YDR027C WSC3Q12215 556 aa5.2□□□□□ -1.58
VPS54YDR027C SPP1Q03012 353 aa5.19□□□□□ -1.58
VPS54YDR027C MRM1P25270 412 aa5.17□□□□□ -1.58
VPS54YDR027C PIB1Q06651 286 aa5.13□□□□□ -1.59
VPS54YDR027C TIF11P38912 153 aaKnown RBP5.12□□□□□ -1.59
VPS54YDR027C MGA2P40578 1113 aa5.1□□□□□ -1.59
VPS54YDR027C CST9Q06032 482 aa5.08□□□□□ -1.6
VPS54YDR027C ULI1P43604 169 aa5.07□□□□□ -1.6
VPS54YDR027C YMR1P47147 688 aaKnown RBP RIP-Chip data5.07□□□□□ -1.6not detected
VPS54YDR027C RTG3P38165 486 aa5.06□□□□□ -1.6
VPS54YDR027C YJL171CP46992 396 aa5.06□□□□□ -1.6
VPS54YDR027C FKH1P40466 484 aa5.05□□□□□ -1.6
VPS54YDR027C MSB4Q12317 492 aa5.04□□□□□ -1.6
VPS54YDR027C AIR2Q12476 344 aaKnown RBP5.04□□□□□ -1.6
VPS54YDR027C DBP1P24784 617 aaKnown RBP5.04□□□□□ -1.6
VPS54YDR027C LDB19Q12502 818 aa5.04□□□□□ -1.6
VPS54YDR027C VPS29P38759 282 aa5.03□□□□□ -1.6
VPS54YDR027C EAP1P36041 632 aaKnown RBP5.02□□□□□ -1.61
VPS54YDR027C YFR006WP43590 535 aa5.02□□□□□ -1.61
VPS54YDR027C IOC2Q12072 812 aa5.01□□□□□ -1.61
VPS54YDR027C SET4P42948 560 aa5□□□□□ -1.61
VPS54YDR027C YOL036WQ08206 761 aa5□□□□□ -1.61
VPS54YDR027C STS1P38637 319 aa4.99□□□□□ -1.61
VPS54YDR027C VMA1P17255 1071 aaKnown RBP4.99□□□□□ -1.61
VPS54YDR027C BMT6Q12291 365 aa4.97□□□□□ -1.61
VPS54YDR027C TRP5P00931 707 aaKnown RBP4.96□□□□□ -1.62
VPS54YDR027C RCR1P38212 213 aa4.96□□□□□ -1.62
VPS54YDR027C RTG1P32607 177 aa4.95□□□□□ -1.62
VPS54YDR027C SAM3Q08986 587 aa4.95□□□□□ -1.62
VPS54YDR027C YNL035CP53962 389 aaKnown RBP4.93□□□□□ -1.62
VPS54YDR027C NCR1Q12200 1170 aa4.92□□□□□ -1.62
VPS54YDR027C ABP1P15891 592 aaKnown RBP4.9□□□□□ -1.62
VPS54YDR027C SEC61P32915 480 aa4.9□□□□□ -1.62
VPS54YDR027C GYP5Q12344 894 aa4.9□□□□□ -1.62
VPS54YDR027C TFG1P41895 735 aaPredicted RBP4.9□□□□□ -1.63
VPS54YDR027C JIP4Q03361 876 aa4.87□□□□□ -1.63
VPS54YDR027C HTA1P04911 132 aaKnown RBP4.87□□□□□ -1.63
VPS54YDR027C HTA2P04912 132 aa4.87□□□□□ -1.63
VPS54YDR027C DCW1P36091 449 aa4.86□□□□□ -1.63
VPS54YDR027C DAN4P47179 1161 aa4.83□□□□□ -1.64
VPS54YDR027C MIF2P35201 549 aa4.82□□□□□ -1.64
VPS54YDR027C SAP30P38429 201 aa4.82□□□□□ -1.64
Retrieved 100 of 5,963 RNA–protein pairs in 12.1 ms