RNA–Protein interactions for RNA: YLR378C

SEC61, Transcript of Conserved ER protein translocation channel, yeastyeast

Gene SEC61, Length 1,443 nt, Biotype protein coding, Subcellular localisation Mitochondria, Peroxisome .

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SEC61YLR378C GPD2P41911 440 aaKnown RBP10.09□□□□□ -0.79
SEC61YLR378C PTA1Q01329 785 aaPredicted RBP10.09□□□□□ -0.79
SEC61YLR378C SVF1Q05515 481 aa10.09□□□□□ -0.79
SEC61YLR378C YLR326WQ06170 240 aaKnown RBP10.09□□□□□ -0.79
SEC61YLR378C ISA1Q07821 250 aaPredicted RBP10.09□□□□□ -0.79
SEC61YLR378C YAP7Q08182 245 aa10.09□□□□□ -0.79
SEC61YLR378C MAK16P10962 306 aaPredicted RBP10.08□□□□□ -0.8
SEC61YLR378C UTR4P32626 227 aa10.08□□□□□ -0.8
SEC61YLR378C MIP6P38760 659 aaKnown RBP10.08□□□□□ -0.8
SEC61YLR378C BRE2P43132 505 aa10.08□□□□□ -0.8
SEC61YLR378C ZPR1P53303 486 aaKnown RBP10.08□□□□□ -0.8
SEC61YLR378C DIP5P53388 608 aa10.08□□□□□ -0.8
SEC61YLR378C DUS3Q06053 668 aaKnown RBP10.08□□□□□ -0.8
SEC61YLR378C WHI4Q07655 649 aaKnown RBP10.08□□□□□ -0.8
SEC61YLR378C YPL216WQ08964 1102 aa10.08□□□□□ -0.8
SEC61YLR378C SUP45P12385 437 aaKnown RBP10.07□□□□□ -0.8
SEC61YLR378C ESS1P22696 170 aa10.07□□□□□ -0.8
SEC61YLR378C SPO11P23179 398 aa10.07□□□□□ -0.8
SEC61YLR378C MRF1P30775 413 aaPredicted RBP10.07□□□□□ -0.8
SEC61YLR378C SUV3P32580 737 aa10.07□□□□□ -0.8
SEC61YLR378C UBP11P36026 717 aa10.07□□□□□ -0.8
SEC61YLR378C BSD2P38356 321 aa10.07□□□□□ -0.8
SEC61YLR378C TOS3P43637 560 aa10.07□□□□□ -0.8
SEC61YLR378C COG4Q06096 861 aa10.07□□□□□ -0.8
SEC61YLR378C YOL075CQ08234 1294 aa10.07□□□□□ -0.8
SEC61YLR378C ATG9Q12142 997 aa10.07□□□□□ -0.8
SEC61YLR378C PKC1P24583 1151 aa10.07□□□□□ -0.8
SEC61YLR378C RPC53P25441 422 aa10.07□□□□□ -0.8
SEC61YLR378C SEC8P32855 1065 aa10.07□□□□□ -0.8
SEC61YLR378C SHP1P34223 423 aa10.07□□□□□ -0.8
SEC61YLR378C EFM2P38347 419 aa10.07□□□□□ -0.8
SEC61YLR378C YGR125WP53273 1036 aa10.07□□□□□ -0.8
SEC61YLR378C JIP4Q03361 876 aa10.07□□□□□ -0.8
SEC61YLR378C YLR287CQ05881 355 aa10.07□□□□□ -0.8
SEC61YLR378C CRD1Q07560 283 aa10.07□□□□□ -0.8
SEC61YLR378C SPO75Q07798 868 aa10.07□□□□□ -0.8
SEC61YLR378C MED1Q12321 566 aa10.07□□□□□ -0.8
SEC61YLR378C SSA4P22202 642 aaKnown RBP10.06□□□□□ -0.8
SEC61YLR378C FIS1P40515 155 aa10.06□□□□□ -0.8
SEC61YLR378C ULP2P40537 1034 aaPredicted RBP10.06□□□□□ -0.8
SEC61YLR378C HUL4P40985 892 aa10.06□□□□□ -0.8
SEC61YLR378C JSN1P47135 1091 aaKnown RBP RIP-Chip data10.06□□□□□ -0.8not detected
SEC61YLR378C STR2P47164 639 aa10.06□□□□□ -0.8
SEC61YLR378C TCO89Q08921 799 aa10.06□□□□□ -0.8
SEC61YLR378C YPL277CQ08989 487 aa10.06□□□□□ -0.8
SEC61YLR378C APL4Q12028 832 aa10.06□□□□□ -0.8
SEC61YLR378C RPS6AP0CX37 236 aaKnown RBP10.05□□□□□ -0.8
SEC61YLR378C RPS6BP0CX38 236 aaPredicted RBP10.05□□□□□ -0.8
SEC61YLR378C PCK1P10963 549 aa10.05□□□□□ -0.8
SEC61YLR378C PRP22P24384 1145 aaKnown RBP10.05□□□□□ -0.8
SEC61YLR378C CDC60P26637 1090 aaKnown RBP10.05□□□□□ -0.8
SEC61YLR378C RPC25P35718 212 aa10.05□□□□□ -0.8
SEC61YLR378C PXL1P36166 706 aa10.05□□□□□ -0.8
SEC61YLR378C UBP13P38187 747 aa10.05□□□□□ -0.8
SEC61YLR378C RTT107P38850 1070 aa10.05□□□□□ -0.8
SEC61YLR378C BIM1P40013 344 aa10.05□□□□□ -0.8
SEC61YLR378C HMF1P40037 129 aaKnown RBP10.05□□□□□ -0.8
SEC61YLR378C OSW7P43611 510 aa10.05□□□□□ -0.8
SEC61YLR378C VID30P53076 958 aa10.05□□□□□ -0.8
SEC61YLR378C NCS2P53923 493 aaPredicted RBP10.05□□□□□ -0.8
SEC61YLR378C RBA50Q04418 439 aa10.05□□□□□ -0.8
SEC61YLR378C VPS38Q05919 439 aa10.05□□□□□ -0.8
SEC61YLR378C PLP2Q12017 286 aa10.05□□□□□ -0.8
SEC61YLR378C RRP6Q12149 733 aaKnown RBP10.05□□□□□ -0.8
SEC61YLR378C TCP1P12612 559 aaKnown RBP10.04□□□□□ -0.8
SEC61YLR378C APL1P27351 700 aa10.04□□□□□ -0.8
SEC61YLR378C EUG1P32474 517 aa10.04□□□□□ -0.8
SEC61YLR378C REG2P38232 338 aa10.04□□□□□ -0.8
SEC61YLR378C CCM1P48237 864 aaPredicted RBP10.04□□□□□ -0.8
SEC61YLR378C UBP15P50101 1230 aa10.04□□□□□ -0.8
SEC61YLR378C SLD5Q03406 294 aa10.04□□□□□ -0.8
SEC61YLR378C ERP3Q12403 225 aa10.04□□□□□ -0.8
SEC61YLR378C TKL1P23254 680 aaKnown RBP10.03□□□□□ -0.8
SEC61YLR378C IXR1P33417 597 aa10.03□□□□□ -0.8
SEC61YLR378C ATG19P35193 415 aa10.03□□□□□ -0.8
SEC61YLR378C SHM1P37292 490 aaPredicted RBP10.03□□□□□ -0.8
SEC61YLR378C SMC3P47037 1230 aa10.03□□□□□ -0.8
SEC61YLR378C NBP1P52919 319 aaPredicted RBP10.03□□□□□ -0.8
SEC61YLR378C TOF1P53840 1238 aa10.03□□□□□ -0.8
SEC61YLR378C GIR2Q03768 265 aaPredicted RBP10.03□□□□□ -0.8
SEC61YLR378C CUR1Q06469 252 aa10.03□□□□□ -0.8
SEC61YLR378C YDL057WQ07379 328 aa10.03□□□□□ -0.8
SEC61YLR378C HMI1Q12039 706 aa10.03□□□□□ -0.8
SEC61YLR378C SWI6P09959 803 aa10.02□□□□□ -0.81
SEC61YLR378C HVG1P0CE11 249 aa10.02□□□□□ -0.81
SEC61YLR378C SSB1P11484 613 aaKnown RBP10.02□□□□□ -0.81
SEC61YLR378C DBP5P20449 482 aaKnown RBP10.02□□□□□ -0.81
SEC61YLR378C DAL7P21826 554 aa10.02□□□□□ -0.81
SEC61YLR378C CDC48P25694 835 aaKnown RBP10.02□□□□□ -0.81
SEC61YLR378C VPS35P34110 944 aa10.02□□□□□ -0.81
SEC61YLR378C PCH2P38126 564 aa10.02□□□□□ -0.81
SEC61YLR378C CAJ1P39101 391 aa10.02□□□□□ -0.81
SEC61YLR378C SSB2P40150 613 aaKnown RBP10.02□□□□□ -0.81
SEC61YLR378C ALF1P53904 254 aa10.02□□□□□ -0.81
SEC61YLR378C TY3A-GQ12173 290 aa10.02□□□□□ -0.81
SEC61YLR378C TY3A-IQ99219 290 aa10.02□□□□□ -0.81
SEC61YLR378C PHO8P11491 566 aa10.01□□□□□ -0.81
SEC61YLR378C RRP43P25359 394 aaPredicted RBP10.01□□□□□ -0.81
SEC61YLR378C TVP38P36164 337 aa10.01□□□□□ -0.81
SEC61YLR378C VPS29P38759 282 aa10.01□□□□□ -0.81
Retrieved 100 of 5,963 RNA–protein pairs in 11.2 ms